Rmu_sc0016170.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016170.1
OG0000187
Physical Location & Seq
Reverse (-)
52885 .. 60860
7976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016170.1_g000013.1.cds

Sequence Viewer

Length: 2169 bp
atgcaatctgggtacctcgcccagcccaacaccaacgccgcccaagctgcccagcgcccgccgaaacccacctatctgttctgggtatttgagtttttggtaaggttttgctgggtgaagtgttttgattcaaaatcccatttggtgtggtttggaatgaagaaagtgatgggactgtactcgattgagctcactaagttggatgaaacctgtgtgtatctaggtgcagtgcggagttttatttctaatgttcactcagcagaacatgcaggattggaggcatgcaaggcagcaattggttatgtccttgctcattctcttcatctggttatttttgaatttgattgtttgatattgaagcaacaacttgatcaaggaaatatgcagaatacttctgcagttaggaggctatatgatgatatcaatgaggatttagaacttcgtcctaattctcagtttgttcatgctcggagggaggccaataaagtagctcatctattagcagtgtatgcttctgctaatgagcagagttcttttgcgaagaacttgtatgttccgctgtcgctgcagctgccacgccaactccagtccgaaccagcaactgacctgctacgagggtccgcctacctagacgacctattaagaaggaagccgtcactggcaacttctcgagaagatgcacaaacatcaacttccatcttagacagacgatgccaccatcttctccgctgctcctctccgcaaccttctagatatataacgccaccgggtttgccaccttcgtcttgtccggcgacgtgcttgggtggcggtggctcgcctcgcctgcttgacgcggctgccggacgggaattcgaaactaaaggactggcagcttatgggacaggggttaaggctcgagtccggctctggatggtcttgggacgagtaccggaagaaatcttaggctcagtgggcggcggtacaacgagagtcgaacgttgcagaggcacctccatgatcggcagagtgatggaggggctagacggtggtggcggcgtgctggatcagattgcatcgaactgttttttcgacgggttcgatcggattttgacgtggtttgaggcagcgaggtcaggcttgtggtgctgcggtgtggctggcgtcagtggcagtggcgagggctggtgtcgtttgcggcggcgagatctggtaccgggtggcagtggtcgaccattggggcggaagatggactgtgggcttgggtcaaggggttctttgttgggcctgagctggcgcctccggcgtagtaccaaaggggaatctccgctatgtctacgtattgattgtacaatgagtgggtctagtttctatgtaccgctgtgggtactaccactatcttcttgtctgttaatggcagcggaagggatccccatccctccattcaccggcaaccaccaaaccattcgggcaaggaaaccaaatcgatctcaagcccctaattggagcgatctaaggaggagagagagccaccacctcaaaacaggttgtggacctcgactttttggaggaaacggtaaaaaagaagagaccgcaaggaccatactcgataactatgacatcaggggaagtgccggaagtctgctccatgatgatggagaagcagttgacctccggcctacacaaggtcaaggtttacgacagtcagaggtgtttatggtgggaaaattgctcactgctcgggactataagatccgctcctttcacgggatgtttcgcaatgcttggcggattaatggatcgctgcaggtgggggaggttgaaggccagagggtcttgttcaccttgtcggacccgtcgaacaggatccgtatttggagggtgctccatggggagcattcccctagctttaggtcagaaagagtgatgactatgatcggtttgacgctcggcgattttcaagaggttgataagacagggatgaaggccggaaagcttctcatccgggtagaaatcccgttgaccaaacagctgccattcaaaaggtggtattgggtggaagaggaggttgagttcttgtgcaagttcaaatatgacaagctttttggccagtgttccatatgcgggctagtgacgcacgttggcctgccttgctcggggccaatgctagaggaagatgatgacggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

722

Amino Acids

80.14

Weight (kDa)

9.06

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1777
Acc36I ACCTGC 2 cut(s) 615, 1777
Acc65I GGTACC 2 cut(s) 12, 1192
AccB1I GGYRCC 4 cut(s) 12, 989, 1192, 1275
AccBSI CCGCTC 1 cut(s) 1737
AccI GTMKAC 2 cut(s) 1210, 1315
AccII CGCG 1 cut(s) 836
AclI AACGTT 1 cut(s) 979
AclWI GGATC 7 cut(s) 1053, 1402, 1415, 1726, 1786, 1840, 1853
AcoI YGGCCR 1 cut(s) 2086
AcsI RAATTY 2 cut(s) 338, 851
AcyI GRCGYC 2 cut(s) 1143, 1276
AfaI GTAC 9 cut(s) 14, 179, 930, 964, 1194, 1291, 1330, 1356, 1368
AfiI CCNNNNNNNGG 6 cut(s) 1427, 1482, 1664, 1746, 2103, 2135
AgsI TTSAA 7 cut(s) 132, 338, 358, 1802, 1940, 2020, 2068
AjiI CACGTC 2 cut(s) 798, 1095
AloI GAACNNNNNNTCC 2 cut(s) 2036, 2068
Alw21I GWGCWC 2 cut(s) 192, 1866
Alw26I GTCTC 1 cut(s) 1562
AlwI GGATC 7 cut(s) 1053, 1402, 1415, 1726, 1786, 1840, 1853
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 4 cut(s) 669, 897, 1719, 2134
AoxI GGCC 8 cut(s) 477, 1264, 1655, 1804, 1965, 2086, 2122, 2138
ApoI RAATTY 2 cut(s) 338, 851
ArsI GACNNNNNNTTYG 2 cut(s) 2066, 2098
AseI ATTAAT 1 cut(s) 1773
Asp718I GGTACC 2 cut(s) 12, 1192
AspLEI GCGC 2 cut(s) 57, 1278
AspS9I GGNCC 6 cut(s) 618, 1264, 1532, 1578, 1831, 2138
AsuC2I CCSGG 3 cut(s) 768, 1197, 1985
AsuHPI GGTGA 3 cut(s) 127, 1417, 1813
AsuII TTCGAA 1 cut(s) 855
AvaI CYCGRG 4 cut(s) 669, 897, 1719, 2134
AvaII GGWCC 4 cut(s) 618, 1532, 1578, 1831
BalI TGGCCA 1 cut(s) 2088
BamHI GGATCC 2 cut(s) 1407, 1845
BanI GGYRCC 4 cut(s) 12, 989, 1192, 1275
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 192, 1866
BccI CCATC 8 cut(s) 163, 704, 726, 907, 1006, 1222, 1421, 1628
BceAI ACGGC 1 cut(s) 637
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 3 cut(s) 768, 1197, 1985
BcoDI GTCTC 1 cut(s) 1562
BfaI CTAG 8 cut(s) 221, 629, 750, 1022, 1344, 1884, 2108, 2147
BfmI CTRYAG 3 cut(s) 396, 566, 1784
BfoI RGCGCY 2 cut(s) 58, 1279
BfuAI ACCTGC 2 cut(s) 615, 1777
BglII AGATCT 1 cut(s) 1186
Bme1390I CCNGG 3 cut(s) 768, 1197, 1985
Bme18I GGWCC 4 cut(s) 618, 1532, 1578, 1831
BmeT110I CYCGRG 4 cut(s) 669, 897, 1719, 2134
BmgBI CACGTC 2 cut(s) 798, 1095
BmgT120I GGNCC 6 cut(s) 618, 1264, 1532, 1578, 1831, 2138
BmiI GGNNCC 9 cut(s) 14, 619, 991, 1194, 1277, 1409, 1833, 1847, 2139
BmrFI CCNGG 3 cut(s) 768, 1197, 1985
BmsI GCATC 3 cut(s) 667, 701, 1064
BplI GAGNNNNNCTC 2 cut(s) 891, 923
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 1268
Bpu14I TTCGAA 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 1455
BpuMI CCSGG 3 cut(s) 768, 1197, 1985
Bsa29I ATCGAT 1 cut(s) 1465
BsaAI YACGTR 1 cut(s) 1319
BsaBI GATNNNNATC 1 cut(s) 1412
BsaHI GRCGYC 2 cut(s) 1143, 1276
BsaI GGTCTC 1 cut(s) 1562
BsaJI CCNNGG 1 cut(s) 1867
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 6 cut(s) 567, 597, 1629, 1659, 2036, 2066
Bsc4I CCNNNNNNNGG 6 cut(s) 1427, 1482, 1664, 1746, 2103, 2135
Bse118I RCCGGY 1 cut(s) 1427
Bse1I ACTGG 4 cut(s) 586, 663, 873, 2089
Bse3DI GCAATG 1 cut(s) 1765
Bse8I GATNNNNATC 1 cut(s) 1412
BseCI ATCGAT 1 cut(s) 1465
BseDI CCNNGG 1 cut(s) 1867
BseGI GGATG 6 cut(s) 208, 918, 1413, 1755, 1965, 1980
BseJI GATNNNNATC 1 cut(s) 1412
BseLI CCNNNNNNNGG 6 cut(s) 1427, 1482, 1664, 1746, 2103, 2135
BseMI GCAATG 1 cut(s) 1765
BseMII CTCAG 4 cut(s) 270, 467, 963, 1259
BseNI ACTGG 4 cut(s) 586, 663, 873, 2089
BseRI GAGGAG 3 cut(s) 724, 1513, 2057
BseYI CCCAGC 3 cut(s) 21, 51, 111
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 836
Bsh1285I CGRYCG 1 cut(s) 1084
BshFI GGCC 8 cut(s) 479, 1266, 1657, 1806, 1967, 2088, 2124, 2140
BshNI GGYRCC 4 cut(s) 12, 989, 1192, 1275
BshVI ATCGAT 1 cut(s) 1465
BsiEI CGRYCG 1 cut(s) 1084
BsiHKAI GWGCWC 2 cut(s) 192, 1866
BsiHKCI CYCGRG 4 cut(s) 669, 897, 1719, 2134
BslFI GGGAC 4 cut(s) 186, 895, 936, 1736
BslI CCNNNNNNNGG 6 cut(s) 1427, 1482, 1664, 1746, 2103, 2135
BsmAI GTCTC 1 cut(s) 1562
BsmFI GGGAC 4 cut(s) 186, 895, 936, 1736
BsmI GAATGC 1 cut(s) 1876
BsnI GGCC 8 cut(s) 479, 1266, 1657, 1806, 1967, 2088, 2124, 2140
Bso31I GGTCTC 1 cut(s) 1562
BsoBI CYCGRG 4 cut(s) 669, 897, 1719, 2134
Bsp119I TTCGAA 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 192, 1866
Bsp1407I TGTACA 1 cut(s) 1328
Bsp19I CCATGG 1 cut(s) 1867
BspANI GGCC 8 cut(s) 479, 1266, 1657, 1806, 1967, 2088, 2124, 2140
BspCNI CTCAG 4 cut(s) 269, 466, 962, 1260
BspDI ATCGAT 1 cut(s) 1465
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 9 cut(s) 14, 619, 991, 1194, 1277, 1409, 1833, 1847, 2139
BspMAI CTGCAG 3 cut(s) 400, 570, 1788
BspMI ACCTGC 2 cut(s) 615, 1777
BspPI GGATC 7 cut(s) 1053, 1402, 1415, 1726, 1786, 1840, 1853
BspT104I TTCGAA 1 cut(s) 855
BspT107I GGYRCC 4 cut(s) 12, 989, 1192, 1275
BspTNI GGTCTC 1 cut(s) 1562
BsrBI CCGCTC 1 cut(s) 1737
BsrDI GCAATG 1 cut(s) 1765
BsrFI RCCGGY 1 cut(s) 1427
BsrGI TGTACA 1 cut(s) 1328
BsrI ACTGG 4 cut(s) 586, 663, 873, 2089
BssAI RCCGGY 1 cut(s) 1427
BssECI CCNNGG 1 cut(s) 1867
BssNI GRCGYC 2 cut(s) 1143, 1276
BssT1I CCWWGG 1 cut(s) 1867
Bst4CI ACNGT 6 cut(s) 177, 1028, 1064, 1235, 1556, 1683
Bst6I CTCTTC 3 cut(s) 324, 1560, 2034
BstACI GRCGYC 2 cut(s) 1143, 1276
BstAPI GCANNNNNTGC 2 cut(s) 266, 509
BstAUI TGTACA 1 cut(s) 1328
BstBAI YACGTR 1 cut(s) 1319
BstBI TTCGAA 1 cut(s) 855
BstC8I GCNNGC 9 cut(s) 59, 283, 818, 827, 1040, 1141, 1274, 2105, 2126
BstDEI CTNAG 8 cut(s) 195, 256, 453, 700, 943, 949, 1268, 1493
BstDSI CCRYGG 1 cut(s) 1867
BstENI CCTNNNNNAGG 1 cut(s) 1662
BstF5I GGATG 6 cut(s) 208, 918, 1413, 1755, 1965, 1980
BstFNI CGCG 1 cut(s) 836
BstH2I RGCGCY 2 cut(s) 58, 1279
BstHHI GCGC 2 cut(s) 57, 1278
BstMAI GTCTC 1 cut(s) 1562
BstMCI CGRYCG 1 cut(s) 1084
BstNSI RCATGY 2 cut(s) 269, 285
BstSCI CCNGG 3 cut(s) 766, 1195, 1983
BstSFI CTRYAG 3 cut(s) 396, 566, 1784
BstSNI TACGTA 1 cut(s) 1319
BstUI CGCG 1 cut(s) 836
BstX2I RGATCY 4 cut(s) 1186, 1407, 1731, 1845
BstXI CCANNNNNNTGG 1 cut(s) 1634
BstYI RGATCY 4 cut(s) 1186, 1407, 1731, 1845
Bsu15I ATCGAT 1 cut(s) 1465
BsuRI GGCC 8 cut(s) 479, 1266, 1657, 1806, 1967, 2088, 2124, 2140
BsuTUI ATCGAT 1 cut(s) 1465
BtgI CCRYGG 1 cut(s) 1867
BtrI CACGTC 2 cut(s) 798, 1095
BtsCI GGATG 6 cut(s) 208, 918, 1413, 1755, 1965, 1980
BtsI GCAGTG 5 cut(s) 234, 510, 1159, 1210, 1713
BtsIMutI CAGTG 9 cut(s) 234, 510, 656, 957, 1153, 1159, 1210, 1713, 2096
BveI ACCTGC 2 cut(s) 615, 1777
Cac8I GCNNGC 9 cut(s) 59, 283, 818, 827, 1040, 1141, 1274, 2105, 2126
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 2 cut(s) 57, 1278
Cfr10I RCCGGY 1 cut(s) 1427
Cfr13I GGNCC 6 cut(s) 618, 1264, 1532, 1578, 1831, 2138
ClaI ATCGAT 1 cut(s) 1465
CseI GACGC 4 cut(s) 842, 1132, 1933, 2122
Csp6I GTAC 9 cut(s) 13, 178, 929, 963, 1193, 1290, 1329, 1355, 1367
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviAII CATG 6 cut(s) 266, 282, 464, 997, 1628, 1868
CviQI GTAC 9 cut(s) 13, 178, 929, 963, 1193, 1290, 1329, 1355, 1367
DdeI CTNAG 8 cut(s) 195, 256, 453, 700, 943, 949, 1268, 1493
DinI GGCGCC 1 cut(s) 1277
EaeI YGGCCR 1 cut(s) 2086
Eam1104I CTCTTC 3 cut(s) 324, 1560, 2034
EarI CTCTTC 3 cut(s) 324, 1560, 2034
EciI GGCGGA 3 cut(s) 610, 1237, 1783
Ecl136II GAGCTC 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 1319
Eco130I CCWWGG 1 cut(s) 1867
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 1562
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 4 cut(s) 618, 1532, 1578, 1831
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 4 cut(s) 669, 897, 1719, 2134
EcoICRI GAGCTC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 1662
EcoRI GAATTC 1 cut(s) 851
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 1867
EcoT38I GRGCYC 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 1277
EheI GGCGCC 1 cut(s) 1277
ErhI CCWWGG 1 cut(s) 1867
FaeI CATG 6 cut(s) 269, 285, 467, 1000, 1631, 1871
FalI AAGNNNNNCTT 2 cut(s) 1240, 1272
FaqI GGGAC 4 cut(s) 186, 895, 936, 1736
FatI CATG 6 cut(s) 265, 281, 463, 996, 1627, 1867
FauI CCCGC 2 cut(s) 66, 2096
FauNDI CATATG 1 cut(s) 2099
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 2 cut(s) 1210, 1315
FokI GGATG 6 cut(s) 215, 925, 1400, 1762, 1967, 1972
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 8 cut(s) 221, 629, 750, 1022, 1344, 1884, 2108, 2147
GlaI GCGC 2 cut(s) 56, 1277
GsaI CCCAGC 3 cut(s) 25, 55, 115
GsuI CTGGAG 1 cut(s) 569
HaeII RGCGCY 2 cut(s) 58, 1279
HaeIII GGCC 8 cut(s) 479, 1266, 1657, 1806, 1967, 2088, 2124, 2140
HgaI GACGC 4 cut(s) 842, 1132, 1933, 2122
HhaI GCGC 2 cut(s) 57, 1278
Hin1I GRCGYC 2 cut(s) 1143, 1276
Hin1II CATG 6 cut(s) 269, 285, 467, 1000, 1631, 1871
Hin6I GCGC 2 cut(s) 55, 1276
HinP1I GCGC 2 cut(s) 55, 1276
HincII GTYRAC 3 cut(s) 1211, 1648, 2001
HindII GTYRAC 3 cut(s) 1211, 1648, 2001
HindIII AAGCTT 2 cut(s) 1973, 2078
HinfI GANTC 4 cut(s) 128, 900, 972, 1301
HphI GGTGA 3 cut(s) 127, 1417, 1813
Hpy166II GTNNAC 8 cut(s) 253, 1211, 1316, 1532, 1648, 1676, 1821, 2001
Hpy188I TCNGA 7 cut(s) 471, 592, 1050, 1086, 1687, 1831, 1897
Hpy188III TCNNGA 6 cut(s) 669, 671, 750, 910, 1721, 1940
Hpy8I GTNNAC 8 cut(s) 253, 1211, 1316, 1532, 1648, 1676, 1821, 2001
Hpy99I CGWCG 3 cut(s) 799, 1076, 1840
HpyAV CCTTC 6 cut(s) 639, 756, 789, 1397, 1796, 1957
HpyCH4III ACNGT 6 cut(s) 177, 1028, 1064, 1235, 1556, 1683
HpyCH4IV ACGT 5 cut(s) 797, 979, 1094, 1318, 2118
HpyF3I CTNAG 8 cut(s) 195, 256, 453, 700, 943, 949, 1268, 1493
HpySE526I ACGT 5 cut(s) 797, 979, 1094, 1318, 2118
Hsp92I GRCGYC 2 cut(s) 1143, 1276
Hsp92II CATG 6 cut(s) 269, 285, 467, 1000, 1631, 1871
HspAI GCGC 2 cut(s) 55, 1276
KasI GGCGCC 1 cut(s) 1275
KpnI GGTACC 2 cut(s) 16, 1196
Ksp22I TGATCA 1 cut(s) 370
LmnI GCTCC 6 cut(s) 737, 1485, 1629, 1742, 1869, 1873
LweI GCATC 3 cut(s) 667, 701, 1064
MaeI CTAG 8 cut(s) 221, 629, 750, 1022, 1344, 1884, 2108, 2147
MaeII ACGT 5 cut(s) 797, 979, 1094, 1318, 2118
MaeIII GTNAC 2 cut(s) 654, 2110
MbiI CCGCTC 1 cut(s) 1737
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 4 cut(s) 1186, 1407, 1731, 1845
MhlI GDGCHC 2 cut(s) 192, 1866
MlsI TGGCCA 1 cut(s) 2088
MluCI AATT 6 cut(s) 294, 338, 448, 851, 1480, 1706
MluNI TGGCCA 1 cut(s) 2088
Mly113I GGCGCC 1 cut(s) 1276
MlyI GAGTC 2 cut(s) 909, 981
MmeI TCCRAC 2 cut(s) 180, 1809
Mox20I TGGCCA 1 cut(s) 2088
MscI TGGCCA 1 cut(s) 2088
MseI TTAA 4 cut(s) 641, 891, 1391, 1773
MslI CAYNNNNRTG 2 cut(s) 995, 1632
Msp20I TGGCCA 1 cut(s) 2088
MspA1I CMGCKG 6 cut(s) 559, 571, 729, 1360, 1400, 2011
MspR9I CCNGG 3 cut(s) 768, 1197, 1985
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 1876
MvnI CGCG 1 cut(s) 836
NarI GGCGCC 1 cut(s) 1276
NciI CCSGG 3 cut(s) 768, 1197, 1985
NcoI CCATGG 1 cut(s) 1867
NdeI CATATG 1 cut(s) 2099
NlaIII CATG 6 cut(s) 269, 285, 467, 1000, 1631, 1871
NlaIV GGNNCC 9 cut(s) 14, 619, 991, 1194, 1277, 1409, 1833, 1847, 2139
NmeAIII GCCGAG 1 cut(s) 1908
NmuCI GTSAC 2 cut(s) 654, 2110
NspI RCATGY 2 cut(s) 269, 285
NspV TTCGAA 1 cut(s) 855
PaeI GCATGC 1 cut(s) 285
PaeR7I CTCGAG 2 cut(s) 669, 897
PaqCI CACCTGC 1 cut(s) 1777
PcsI WCGNNNNNNNCGW 2 cut(s) 1077, 1835
PctI GAATGC 1 cut(s) 1876
PfeI GAWTC 2 cut(s) 128, 1301
Ple19I CGATCG 1 cut(s) 1084
PleI GAGTC 2 cut(s) 908, 980
PluTI GGCGCC 1 cut(s) 1279
PpsI GAGTC 2 cut(s) 908, 980
Ppu21I YACGTR 1 cut(s) 1319
PshBI ATTAAT 1 cut(s) 1773
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 979
PspFI CCCAGC 3 cut(s) 21, 51, 111
PspN4I GGNNCC 9 cut(s) 14, 619, 991, 1194, 1277, 1409, 1833, 1847, 2139
PspPI GGNCC 6 cut(s) 618, 1264, 1532, 1578, 1831, 2138
PspXI VCTCGAGB 1 cut(s) 897
PstI CTGCAG 3 cut(s) 400, 570, 1788
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 4 cut(s) 1186, 1407, 1731, 1845
PvuI CGATCG 1 cut(s) 1084
PvuII CAGCTG 2 cut(s) 571, 2011
RsaI GTAC 9 cut(s) 14, 179, 930, 964, 1194, 1291, 1330, 1356, 1368
RsaNI GTAC 9 cut(s) 13, 178, 929, 963, 1193, 1290, 1329, 1355, 1367
RseI CAYNNNNRTG 2 cut(s) 995, 1632
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 1209
SaqAI TTAA 4 cut(s) 641, 891, 1391, 1773
Sau96I GGNCC 6 cut(s) 618, 1264, 1532, 1578, 1831, 2138
SchI GAGTC 2 cut(s) 909, 981
ScrFI CCNGG 3 cut(s) 768, 1197, 1985
SduI GDGCHC 2 cut(s) 192, 1866
SfaNI GCATC 3 cut(s) 667, 701, 1064
SfcI CTRYAG 3 cut(s) 396, 566, 1784
SfoI GGCGCC 1 cut(s) 1277
Sfr274I CTCGAG 2 cut(s) 669, 897
SfuI TTCGAA 1 cut(s) 855
SinI GGWCC 4 cut(s) 618, 1532, 1578, 1831
SlaI CTCGAG 2 cut(s) 669, 897
SmiMI CAYNNNNRTG 2 cut(s) 995, 1632
SmlI CTYRAG 3 cut(s) 669, 897, 1470
SmoI CTYRAG 3 cut(s) 669, 897, 1470
SnaBI TACGTA 1 cut(s) 1319
SphI GCATGC 1 cut(s) 285
Sse9I AATT 6 cut(s) 294, 338, 448, 851, 1480, 1706
SspDI GGCGCC 1 cut(s) 1275
SspMI CTAG 8 cut(s) 221, 629, 750, 1022, 1344, 1884, 2108, 2147
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 766, 1195, 1983
StyI CCWWGG 1 cut(s) 1867
TaaI ACNGT 6 cut(s) 177, 1028, 1064, 1235, 1556, 1683
TaiI ACGT 5 cut(s) 800, 982, 1097, 1321, 2121
TasI AATT 6 cut(s) 294, 338, 448, 851, 1480, 1706
TatI WGTACW 2 cut(s) 177, 1328
TauI GCSGC 6 cut(s) 41, 839, 960, 1038, 1180, 1183
TfiI GAWTC 2 cut(s) 128, 1301
Tru1I TTAA 4 cut(s) 641, 891, 1391, 1773
Tru9I TTAA 4 cut(s) 641, 891, 1391, 1773
TscAI CASTG 9 cut(s) 234, 510, 663, 957, 1153, 1159, 1210, 1720, 2096
TseFI GTSAC 2 cut(s) 654, 2110
Tsp45I GTSAC 2 cut(s) 654, 2110
TspDTI ATGAA 5 cut(s) 173, 219, 311, 452, 1976
TspGWI ACGGA 1 cut(s) 1838
TspRI CASTG 9 cut(s) 234, 510, 663, 957, 1153, 1159, 1210, 1720, 2096
VpaK11BI GGWCC 4 cut(s) 618, 1532, 1578, 1831
VspI ATTAAT 1 cut(s) 1773
XagI CCTNNNNNAGG 1 cut(s) 1662
XapI RAATTY 2 cut(s) 338, 851
XbaI TCTAGA 1 cut(s) 749
XceI RCATGY 2 cut(s) 269, 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 2022
XhoI CTCGAG 2 cut(s) 669, 897
XmiI GTMKAC 2 cut(s) 1210, 1315
XspI CTAG 8 cut(s) 221, 629, 750, 1022, 1344, 1884, 2108, 2147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.