Rmu_sc0003840.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003840.1
OG0000187
Physical Location & Seq
Reverse (-)
2844 .. 4007
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003840.1_g000002.1.cds

Sequence Viewer

Length: 1164 bp
atggggatgtttcgcaacgcctcgagggctaatggttcgctgcaggtggaggaagcagaaggacagagggtgttattcacgctgtcggatccgtctgatcaagttcgaatatggcggggtgccccatgggggtataatcacgcgctggtggctctagctttgtatgatggtatcatgccggtggagaaagtgcccgtagccatggcatcatattggataacttttcagggaataccaccagcgtttcgatctgaacgtgtcatgactatgatcggctacacgctgggggattttcaggagattgataagactgctaagaagactgggaaacgccggattagggttgagatacctttgcataaaccattgcctttcaagcggtggtactttgtggaagatgcgatcgagtttcgctgcgaattccgttatggcaagcttttcggaagatgctctgtatgtggattagtcacgcatgtgggtttgccatgctccagaccggcgttggatgaagacgatgatgaagccgagagaattattttgggatcccaaaacacggtgttggagaggagtggtgggggctcgccgggagtttgggcggggtcaacatcggggcatgctagtggtagtgagctcaatactggtgtaagagctagggttaccaccccgtgtccaccattgatatttcggactccagatcatggtccgagtggggaaccatgtttgaatgttttatttccaaagcagaagcgacatgttgtggtgcgcgaacttcaggggacagcggacactccagaacgcatcactggcaagcgtcgagccagagaagaaagcctgactatctctcctaagaaactgaaattgagcttggcggtaggtaagagaaatctcacccttgattctgaaaatcttggattggaccctaaacaggaggtgactcattctgggagtatgaagtggaagagaggacgaccttctagtaataagtcgtcgtctgatggcaagcagcagacctcaaaacatggtgaggggaaggcgaagaataagtccccaacgaagaaacaatctgtggggaaacactccaaccccaaaagggacggagttggctcttttttaatttatgttacttggggtaaagcttatgtgagagtatatagacttctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

387

Amino Acids

42.94

Weight (kDa)

9.84

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
AbsI CCTCGAGG 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 2 cut(s) 143, 765
AciI CCGC 5 cut(s) 115, 379, 596, 782, 869
AclWI GGATC 4 cut(s) 83, 96, 537, 550
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 755
AdeI CACNNNGTG 1 cut(s) 666
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 6 cut(s) 129, 340, 553, 698, 925, 1090
AflIII ACRYGT 2 cut(s) 256, 751
AgsI TTSAA 2 cut(s) 376, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 6 cut(s) 158, 436, 631, 650, 864, 1136
AluI AGCT 6 cut(s) 158, 436, 631, 650, 864, 1136
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 4 cut(s) 83, 96, 537, 550
Ama87I CYCGRG 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 40, 414, 1003
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 1028, 1060
AspLEI GCGC 2 cut(s) 145, 765
AspS9I GGNCC 2 cut(s) 701, 916
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 880, 943, 1034
AsuII TTCGAA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 2 cut(s) 701, 916
BaeGI GKGCMC 2 cut(s) 124, 195
BamHI GGATCC 2 cut(s) 88, 542
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 581, 633
BarI GAAGNNNNNNTAC 1 cut(s) 1140
BbsI GAAGAC 2 cut(s) 326, 516
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 27, 401, 1015
BccI CCATC 2 cut(s) 161, 989
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 585
BfaI CTAG 4 cut(s) 155, 618, 651, 975
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 34
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 3 cut(s) 41, 415, 1004
BlsI GCNGC 3 cut(s) 42, 416, 1005
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 2 cut(s) 701, 916
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 701, 916
BmiI GGNNCC 5 cut(s) 90, 121, 544, 714, 918
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 4 cut(s) 215, 388, 437, 807
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 2 cut(s) 326, 516
BpmI CTGGAG 3 cut(s) 475, 675, 774
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 125, 201
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 6 cut(s) 129, 340, 553, 698, 925, 1090
Bse118I RCCGGY 2 cut(s) 178, 496
Bse1I ACTGG 3 cut(s) 328, 643, 808
Bse3DI GCAATG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 125, 201
BseGI GGATG 2 cut(s) 12, 511
BseLI CCNNNNNNNGG 6 cut(s) 129, 340, 553, 698, 925, 1090
BseMI GCAATG 1 cut(s) 365
BseNI ACTGG 3 cut(s) 328, 643, 808
BseRI GAGGAG 1 cut(s) 580
BseSI GKGCMC 2 cut(s) 124, 195
BseXI GCAGC 3 cut(s) 27, 401, 1015
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 143, 765
Bsh1285I CGRYCG 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 4 cut(s) 179, 334, 497, 584
BslFI GGGAC 3 cut(s) 790, 1030, 1106
BslI CCNNNNNNNGG 6 cut(s) 129, 340, 553, 698, 925, 1090
BsmFI GGGAC 3 cut(s) 790, 1030, 1106
BsoBI CYCGRG 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 4 cut(s) 124, 195, 581, 633
Bsp143I GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
Bsp19I CCATGG 2 cut(s) 125, 201
BspACI CCGC 5 cut(s) 115, 379, 596, 782, 869
BspFNI CGCG 2 cut(s) 143, 765
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 5 cut(s) 90, 121, 544, 714, 918
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 4 cut(s) 83, 96, 537, 550
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 2 cut(s) 178, 496
BsrI ACTGG 3 cut(s) 328, 643, 808
BssAI RCCGGY 2 cut(s) 178, 496
BssECI CCNNGG 2 cut(s) 125, 201
BssMI GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
BssT1I CCWWGG 2 cut(s) 125, 201
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 953
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 5 cut(s) 434, 581, 615, 809, 1001
BstDEI CTNAG 2 cut(s) 315, 846
BstDSI CCRYGG 2 cut(s) 125, 201
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 2 cut(s) 12, 511
BstFNI CGCG 2 cut(s) 143, 765
BstHHI GCGC 2 cut(s) 145, 765
BstKTI GATC 7 cut(s) 91, 100, 251, 273, 405, 545, 697
BstMBI GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 4 cut(s) 26, 149, 376, 804
BstNSI RCATGY 3 cut(s) 476, 617, 755
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 1 cut(s) 41
BstSLI GKGCMC 2 cut(s) 124, 195
BstUI CGCG 2 cut(s) 143, 765
BstV1I GCAGC 3 cut(s) 27, 401, 1015
BstV2I GAAGAC 2 cut(s) 326, 516
BstX2I RGATCY 2 cut(s) 88, 542
BstYI RGATCY 2 cut(s) 88, 542
BtgI CCRYGG 2 cut(s) 125, 201
BtsCI GGATG 2 cut(s) 12, 511
BtsIMutI CAGTG 1 cut(s) 801
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 5 cut(s) 434, 581, 615, 809, 1001
CciI TCATGA 1 cut(s) 261
CfoI GCGC 2 cut(s) 145, 765
Cfr10I RCCGGY 2 cut(s) 178, 496
Cfr13I GGNCC 2 cut(s) 701, 916
CseI GACGC 1 cut(s) 800
Csp6I GTAC 1 cut(s) 385
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 315, 846
DpnI GATC 7 cut(s) 90, 99, 250, 272, 404, 544, 696
DpnII GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
DraIII CACNNNGTG 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 125, 201
Eco24I GRGCYC 2 cut(s) 581, 633
Eco47I GGWCC 2 cut(s) 701, 916
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 22
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 631
EcoO65I GGTNACC 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 125, 201
EcoT38I GRGCYC 2 cut(s) 581, 633
ErhI CCWWGG 2 cut(s) 125, 201
FaqI GGGAC 3 cut(s) 790, 1030, 1106
FauI CCCGC 2 cut(s) 108, 589
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 41, 415, 1004
FokI GGATG 2 cut(s) 19, 518
FriOI GRGCYC 2 cut(s) 581, 633
Fsp4HI GCNGC 3 cut(s) 41, 415, 1004
FspBI CTAG 4 cut(s) 155, 618, 651, 975
GlaI GCGC 2 cut(s) 144, 764
GluI GCNGC 3 cut(s) 41, 415, 1004
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 3 cut(s) 475, 675, 774
HapII CCGG 4 cut(s) 179, 334, 497, 584
HgaI GACGC 1 cut(s) 800
HhaI GCGC 2 cut(s) 145, 765
Hin6I GCGC 2 cut(s) 143, 763
HinP1I GCGC 2 cut(s) 143, 763
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HindIII AAGCTT 2 cut(s) 434, 1134
HinfI GANTC 3 cut(s) 688, 896, 934
HpaII CCGG 4 cut(s) 179, 334, 497, 584
HphI GGTGA 3 cut(s) 880, 943, 1034
Hpy166II GTNNAC 2 cut(s) 603, 671
Hpy188I TCNGA 8 cut(s) 88, 97, 253, 443, 687, 705, 901, 994
Hpy188III TCNNGA 5 cut(s) 262, 296, 492, 692, 791
Hpy8I GTNNAC 2 cut(s) 603, 671
Hpy99I CGWCG 2 cut(s) 816, 991
HpyAV CCTTC 3 cut(s) 53, 981, 1024
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 43, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 149, 376, 804
HpyF3I CTNAG 2 cut(s) 315, 846
HpySE526I ACGT 1 cut(s) 256
HspAI GCGC 2 cut(s) 143, 763
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
LmnI GCTCC 1 cut(s) 494
Lsp1109I GCAGC 3 cut(s) 27, 401, 1015
LweI GCATC 4 cut(s) 215, 388, 437, 807
MaeI CTAG 4 cut(s) 155, 618, 651, 975
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 4 cut(s) 466, 655, 931, 1120
MalI GATC 7 cut(s) 90, 99, 250, 272, 404, 544, 696
MboI GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
MboII GAAGA 8 cut(s) 331, 407, 456, 521, 836, 970, 1048, 1066
MflI RGATCY 2 cut(s) 88, 542
MhlI GDGCHC 4 cut(s) 124, 195, 581, 633
MluCI AATT 4 cut(s) 419, 531, 857, 1113
MlyI GAGTC 2 cut(s) 682, 928
MmeI TCCRAC 4 cut(s) 66, 483, 540, 1104
MnlI CCTC 9 cut(s) 18, 31, 43, 60, 558, 922, 956, 1018, 1021
MseI TTAA 1 cut(s) 1112
MslI CAYNNNNRTG 4 cut(s) 179, 266, 473, 618
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 179, 334, 497, 584
MspR9I CCNGG 1 cut(s) 585
MvnI CGCG 2 cut(s) 143, 765
MwoI GCNNNNNNNGC 4 cut(s) 26, 149, 376, 804
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 2 cut(s) 125, 201
NdeII GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
NlaIV GGNNCC 5 cut(s) 90, 121, 544, 714, 918
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 2 cut(s) 466, 931
NspI RCATGY 3 cut(s) 476, 617, 755
NspV TTCGAA 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 473
PaeI GCATGC 1 cut(s) 617
PaeR7I CTCGAG 1 cut(s) 22
PagI TCATGA 1 cut(s) 261
PaqCI CACCTGC 1 cut(s) 34
PciI ACATGT 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 1 cut(s) 896
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 3 cut(s) 42, 416, 1005
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 2 cut(s) 682, 928
PpsI GAGTC 2 cut(s) 682, 928
PscI ACATGT 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 633
PspEI GGTNACC 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 5 cut(s) 90, 121, 544, 714, 918
PspPI GGNCC 2 cut(s) 701, 916
PspXI VCTCGAGB 1 cut(s) 22
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 2 cut(s) 88, 542
PvuI CGATCG 1 cut(s) 405
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 4 cut(s) 179, 266, 473, 618
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 1112
SatI GCNGC 3 cut(s) 41, 415, 1004
Sau3AI GATC 7 cut(s) 88, 97, 248, 270, 402, 542, 694
Sau96I GGNCC 2 cut(s) 701, 916
SchI GAGTC 2 cut(s) 682, 928
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 4 cut(s) 124, 195, 581, 633
SfaNI GCATC 4 cut(s) 215, 388, 437, 807
SfcI CTRYAG 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 2 cut(s) 701, 916
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 4 cut(s) 179, 266, 473, 618
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SphI GCATGC 1 cut(s) 617
Sse9I AATT 4 cut(s) 419, 531, 857, 1113
SsiI CCGC 5 cut(s) 115, 379, 596, 782, 869
SspMI CTAG 4 cut(s) 155, 618, 651, 975
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 2 cut(s) 125, 201
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 259
TaqI TCGA 5 cut(s) 23, 106, 247, 405, 814
TasI AATT 4 cut(s) 419, 531, 857, 1113
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 1 cut(s) 1112
Tru9I TTAA 1 cut(s) 1112
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 2 cut(s) 466, 931
TseI GCWGC 3 cut(s) 40, 414, 1003
Tsp45I GTSAC 2 cut(s) 466, 931
TspDTI ATGAA 3 cut(s) 522, 534, 965
TspGWI ACGGA 3 cut(s) 81, 413, 1110
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 701, 916
XapI RAATTY 1 cut(s) 419
XceI RCATGY 3 cut(s) 476, 617, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 22
XspI CTAG 4 cut(s) 155, 618, 651, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.