Rmu_ssc0000392.1_g000004

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000392.1
OG0000187
Physical Location & Seq
Reverse (-)
6592 .. 7336
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000392.1_g000004.1.cds

Sequence Viewer

Length: 654 bp
atgacctatgttgatgctatggctgcgcgtctggcttcctccctctcagtcgcggagggaaagaagcaagttgacctgcgcccaaccaaaggaaaagggttacgacaagctaatgtgttcatggtgggaaaattgttaaccgcaagggagttcaaggttcgttcgactttggggatgttttgcaatgtatggagggtgaatgggagtctgcaggtggaggaggcagagggtcaaagggtattgtttacgttctcggatccggctgatcaggagcaagtctggtggggagcgctgtggggctttaatatggccctggtggcgttggccatgtatgacggtgtttctcctctggaacaagtgccgctggagattgataagccaggaaaaaggaccggtaagtatcggattcgggtggagattcctttcactcgacctttgtcactgcaacgatggtttttggtcaaagatgaggttgagttcttgtgcaaattccattatgacaaactgtttggaagatgtggagtgtgtgggttgataactcatgttggtttaccgttctcagggccgaccttggatgaggaggaggcggcggcagagcatactgtgttgggtgatcaacaggcgccgctggcaccagagatagctctgctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

217

Amino Acids

24.23

Weight (kDa)

6.33

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 2 cut(s) 84, 202
AccB1I GGYRCC 2 cut(s) 622, 631
AccII CGCG 2 cut(s) 28, 53
AciI CCGC 6 cut(s) 53, 141, 362, 587, 590, 626
AclWI GGATC 2 cut(s) 251, 264
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 89, 560
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 2 cut(s) 312, 379
AluBI AGCT 2 cut(s) 110, 644
AluI AGCT 2 cut(s) 110, 644
AlwI GGATC 2 cut(s) 251, 264
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 3 cut(s) 309, 324, 563
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 488
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsiGI ACCGGT 1 cut(s) 392
AspLEI GCGC 4 cut(s) 28, 81, 292, 625
AspS9I GGNCC 3 cut(s) 310, 390, 563
AsuHPI GGTGA 2 cut(s) 208, 623
AvaII GGWCC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 622, 631
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 444
BciT130I CCWGG 2 cut(s) 314, 381
BclI TGATCA 2 cut(s) 265, 613
BfmI CTRYAG 1 cut(s) 209
BfoI RGCGCY 2 cut(s) 293, 626
BfuAI ACCTGC 2 cut(s) 84, 202
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 5 cut(s) 24, 362, 588, 591, 626
BlsI GCNGC 5 cut(s) 25, 363, 589, 592, 627
Bme1390I CCNGG 2 cut(s) 314, 381
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 310, 390, 563
BmiI GGNNCC 3 cut(s) 258, 624, 633
BmrFI CCNGG 2 cut(s) 314, 381
BmsI GCATC 1 cut(s) 4
BoxI GACNNNNGTC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 312, 570
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 560
Bse118I RCCGGY 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 314, 381
BseDI CCNNGG 2 cut(s) 312, 570
BseGI GGATG 2 cut(s) 180, 580
BseLI CCNNNNNNNGG 2 cut(s) 89, 560
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 60, 573
BseRI GAGGAG 4 cut(s) 233, 336, 593, 596
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 28, 53
BshFI GGCC 3 cut(s) 311, 326, 565
BshNI GGYRCC 2 cut(s) 622, 631
BshTI ACCGGT 1 cut(s) 392
BsiSI CCGG 2 cut(s) 260, 393
BslI CCNNNNNNNGG 2 cut(s) 89, 560
BsnI GGCC 3 cut(s) 311, 326, 565
Bsp143I GATC 3 cut(s) 256, 265, 613
BspACI CCGC 6 cut(s) 53, 141, 362, 587, 590, 626
BspANI GGCC 3 cut(s) 311, 326, 565
BspCNI CTCAG 2 cut(s) 59, 572
BspFNI CGCG 2 cut(s) 28, 53
BspLI GGNNCC 3 cut(s) 258, 624, 633
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 2 cut(s) 84, 202
BspPI GGATC 2 cut(s) 251, 264
BspT107I GGYRCC 2 cut(s) 622, 631
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 312, 570
BssMI GATC 3 cut(s) 256, 265, 613
BssNI GRCGYC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 314, 381
Bst4CI ACNGT 4 cut(s) 338, 507, 555, 604
BstACI GRCGYC 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 2 cut(s) 46, 559
BstF5I GGATG 2 cut(s) 180, 580
BstFNI CGCG 2 cut(s) 28, 53
BstH2I RGCGCY 2 cut(s) 293, 626
BstHHI GCGC 4 cut(s) 28, 81, 292, 625
BstKTI GATC 3 cut(s) 259, 268, 616
BstMBI GATC 3 cut(s) 256, 265, 613
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 629
BstNI CCWGG 2 cut(s) 314, 381
BstPAI GACNNNNGTC 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 312, 379
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 2 cut(s) 28, 53
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 3 cut(s) 311, 326, 565
BtsCI GGATG 2 cut(s) 180, 580
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 440
BveI ACCTGC 2 cut(s) 84, 202
Cac8I GCNNGC 1 cut(s) 630
CfoI GCGC 4 cut(s) 28, 81, 292, 625
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 310, 390, 563
CseI GACGC 1 cut(s) 17
CspAI ACCGGT 1 cut(s) 392
CspCI CAANNNNNGTGG 2 cut(s) 263, 298
CviAII CATG 3 cut(s) 121, 328, 542
DdeI CTNAG 2 cut(s) 46, 559
DinI GGCGCC 1 cut(s) 624
DpnI GATC 3 cut(s) 258, 267, 615
DpnII GATC 3 cut(s) 256, 265, 613
EaeI YGGCCR 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 390
Eco47III AGCGCT 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 312, 379
EcoT14I CCWWGG 1 cut(s) 570
EgeI GGCGCC 1 cut(s) 624
EheI GGCGCC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 3 cut(s) 124, 331, 545
FatI CATG 3 cut(s) 120, 327, 541
FbaI TGATCA 2 cut(s) 265, 613
Fnu4HI GCNGC 5 cut(s) 24, 362, 588, 591, 626
FokI GGATG 2 cut(s) 187, 587
Fsp4HI GCNGC 5 cut(s) 24, 362, 588, 591, 626
GlaI GCGC 4 cut(s) 27, 80, 291, 624
GluI GCNGC 5 cut(s) 24, 362, 588, 591, 626
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 2 cut(s) 293, 626
HaeIII GGCC 3 cut(s) 311, 326, 565
HapII CCGG 2 cut(s) 260, 393
HgaI GACGC 1 cut(s) 17
HhaI GCGC 4 cut(s) 28, 81, 292, 625
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 3 cut(s) 124, 331, 545
Hin6I GCGC 4 cut(s) 26, 79, 290, 623
HinP1I GCGC 4 cut(s) 26, 79, 290, 623
HincII GTYRAC 2 cut(s) 73, 138
HindII GTYRAC 2 cut(s) 73, 138
HinfI GANTC 3 cut(s) 205, 406, 418
HpaI GTTAAC 1 cut(s) 138
HpaII CCGG 2 cut(s) 260, 393
HphI GGTGA 2 cut(s) 208, 623
Hpy166II GTNNAC 4 cut(s) 73, 138, 246, 551
Hpy188I TCNGA 2 cut(s) 256, 405
Hpy188III TCNNGA 2 cut(s) 269, 350
Hpy8I GTNNAC 4 cut(s) 73, 138, 246, 551
HpyCH4III ACNGT 4 cut(s) 338, 507, 555, 604
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 183, 211, 445, 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 629
HpyF3I CTNAG 2 cut(s) 46, 559
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 3 cut(s) 124, 331, 545
HspAI GCGC 4 cut(s) 26, 79, 290, 623
KasI GGCGCC 1 cut(s) 622
Ksp22I TGATCA 2 cut(s) 265, 613
KspAI GTTAAC 1 cut(s) 138
Kzo9I GATC 3 cut(s) 256, 265, 613
LmnI GCTCC 2 cut(s) 271, 287
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 4
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 99, 438
MalI GATC 3 cut(s) 258, 267, 615
MboI GATC 3 cut(s) 256, 265, 613
MboII GAAGA 1 cut(s) 525
MflI RGATCY 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 2 cut(s) 131, 488
MluNI TGGCCA 1 cut(s) 326
Mly113I GGCGCC 1 cut(s) 623
MlyI GAGTC 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MseI TTAA 2 cut(s) 137, 303
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 2 cut(s) 364, 628
MspI CCGG 2 cut(s) 260, 393
MspR9I CCNGG 2 cut(s) 314, 381
MvaI CCWGG 2 cut(s) 314, 381
MvnI CGCG 2 cut(s) 28, 53
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 629
NarI GGCGCC 1 cut(s) 623
NdeII GATC 3 cut(s) 256, 265, 613
NlaIII CATG 3 cut(s) 124, 331, 545
NlaIV GGNNCC 3 cut(s) 258, 624, 633
NmuCI GTSAC 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 406, 418
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 5 cut(s) 25, 363, 589, 592, 627
PleI GAGTC 1 cut(s) 213
PluTI GGCGCC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 312, 379
PspGI CCWGG 2 cut(s) 312, 379
PspN4I GGNNCC 3 cut(s) 258, 624, 633
PspPI GGNCC 3 cut(s) 310, 390, 563
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 256
SaqAI TTAA 2 cut(s) 137, 303
SatI GCNGC 5 cut(s) 24, 362, 588, 591, 626
Sau3AI GATC 3 cut(s) 256, 265, 613
Sau96I GGNCC 3 cut(s) 310, 390, 563
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 314, 381
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 209
SfoI GGCGCC 1 cut(s) 624
SinI GGWCC 1 cut(s) 390
Sse9I AATT 2 cut(s) 131, 488
SsiI CCGC 6 cut(s) 53, 141, 362, 587, 590, 626
SspDI GGCGCC 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 312, 379
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 4 cut(s) 338, 507, 555, 604
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 164, 430
TasI AATT 2 cut(s) 131, 488
TauI GCSGC 4 cut(s) 364, 590, 593, 628
TfiI GAWTC 2 cut(s) 406, 418
Tru1I TTAA 2 cut(s) 137, 303
Tru9I TTAA 2 cut(s) 137, 303
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.