Rmu_sc0024044.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024044.1
OG0000187
Physical Location & Seq
Reverse (-)
2 .. 493
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024044.1_g000001.1.cds

Sequence Viewer

Length: 492 bp
atgacttctgttgatgccatggctgctcgactggcttcttctcttgcaattgctaaggggaggaaacaggtcgatctgcgaccgacgcaaggaaaaggtctgcgacaggcagatgtgtttatgttggggaagctgctgaccgctcgggagtacaagactcgctcctttatggggatgttctgcaatgcatggcgggtgaatggatcactaagggtggaggaagtggagggacagagggttctcatcactttgtcagacgctactgaccgggatcagatctggaagggatctccatggggatataatcacgctccgattgccctagcttactatgatggtgtggcggccatggactcggtccctttcaccgtatcctcttactggattacactgcaaggaatccctcctgcgatccgctcggagagggtgatgactatgattgggtttacccttggtgatttcaaggagattgataaacaggccaagaaggtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

164

Amino Acids

18.25

Weight (kDa)

9.58

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 143, 417
AciI CCGC 4 cut(s) 141, 193, 344, 415
AclWI GGATC 4 cut(s) 211, 279, 295, 406
AcoI YGGCCR 1 cut(s) 345
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 3 cut(s) 89, 171, 381
AgsI TTSAA 1 cut(s) 463
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 133, 326
AluI AGCT 2 cut(s) 133, 326
AlwI GGATC 4 cut(s) 211, 279, 295, 406
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 2 cut(s) 345, 480
ApeKI GCWGC 2 cut(s) 23, 133
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 208, 358, 439, 467
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 10, 120
BccI CCATC 1 cut(s) 329
BciVI GTATCC 1 cut(s) 382
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 382
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 24, 134, 345
BlsI GCNGC 3 cut(s) 25, 135, 346
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 4 cut(s) 18, 293, 348, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 171, 381
Bse1I ACTGG 2 cut(s) 36, 386
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 4 cut(s) 18, 293, 348, 451
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 89, 171, 381
BseMI GCAATG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 36, 386
BseXI GCAGC 2 cut(s) 10, 120
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 347, 482
BsiEI CGRYCG 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 2 cut(s) 243, 344
BslI CCNNNNNNNGG 3 cut(s) 89, 171, 381
BsmFI GGGAC 2 cut(s) 243, 344
BsnI GGCC 2 cut(s) 347, 482
BsoBI CYCGRG 1 cut(s) 144
Bsp143I GATC 6 cut(s) 73, 203, 271, 276, 287, 411
Bsp19I CCATGG 3 cut(s) 18, 293, 348
BspACI CCGC 4 cut(s) 141, 193, 344, 415
BspANI GGCC 2 cut(s) 347, 482
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 4 cut(s) 211, 279, 295, 406
BsrBI CCGCTC 2 cut(s) 143, 417
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 36, 386
BssECI CCNNGG 4 cut(s) 18, 293, 348, 451
BssMI GATC 6 cut(s) 73, 203, 271, 276, 287, 411
BssT1I CCWWGG 4 cut(s) 18, 293, 348, 451
Bst4CI ACNGT 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 54, 209
BstDSI CCRYGG 3 cut(s) 18, 293, 348
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 6 cut(s) 76, 206, 274, 279, 290, 414
BstMBI GATC 6 cut(s) 73, 203, 271, 276, 287, 411
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 10, 120
BstX2I RGATCY 2 cut(s) 276, 287
BstYI RGATCY 2 cut(s) 276, 287
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 347, 482
BtgI CCRYGG 3 cut(s) 18, 293, 348
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 2 cut(s) 94, 266
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 19, 189, 294, 349
CviJI RGCY 6 cut(s) 23, 35, 133, 326, 347, 482
CviKI_1 RGCY 6 cut(s) 23, 35, 133, 326, 347, 482
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 54, 209
DpnI GATC 6 cut(s) 75, 205, 273, 278, 289, 413
DpnII GATC 6 cut(s) 73, 203, 271, 276, 287, 411
EaeI YGGCCR 1 cut(s) 345
Eco130I CCWWGG 4 cut(s) 18, 293, 348, 451
Eco47I GGWCC 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 144
EcoT14I CCWWGG 4 cut(s) 18, 293, 348, 451
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 4 cut(s) 18, 293, 348, 451
FaeI CATG 4 cut(s) 22, 192, 297, 352
FaiI YATR 9 cut(s) 20, 122, 170, 190, 295, 303, 333, 350, 437
FaqI GGGAC 2 cut(s) 243, 344
FatI CATG 4 cut(s) 18, 188, 293, 348
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 24, 134, 345
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 24, 134, 345
FspBI CTAG 1 cut(s) 323
GluI GCNGC 3 cut(s) 24, 134, 345
HaeIII GGCC 2 cut(s) 347, 482
HapII CCGG 1 cut(s) 268
HgaI GACGC 2 cut(s) 94, 266
Hin1II CATG 4 cut(s) 22, 192, 297, 352
HinfI GANTC 3 cut(s) 157, 353, 399
HpaII CCGG 1 cut(s) 268
HphI GGTGA 4 cut(s) 208, 358, 439, 467
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 4 cut(s) 256, 276, 315, 421
Hpy188III TCNNGA 2 cut(s) 146, 280
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 277, 481
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 47, 183, 188, 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
HpyF3I CTNAG 2 cut(s) 54, 209
Hsp92II CATG 4 cut(s) 22, 192, 297, 352
Kzo9I GATC 6 cut(s) 73, 203, 271, 276, 287, 411
LmnI GCTCC 2 cut(s) 167, 316
LpnPI CCDG 8 cut(s) 17, 53, 92, 265, 281, 367, 420, 464
Lsp1109I GCAGC 2 cut(s) 10, 120
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 323
MalI GATC 6 cut(s) 75, 205, 273, 278, 289, 413
MbiI CCGCTC 2 cut(s) 143, 417
MboI GATC 6 cut(s) 73, 203, 271, 276, 287, 411
MboII GAAGA 1 cut(s) 30
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 2 cut(s) 276, 287
MluCI AATT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 151, 347
MnlI CCTC 7 cut(s) 54, 211, 220, 228, 385, 414, 417
Mph1103I ATGCAT 1 cut(s) 190
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 3 cut(s) 18, 293, 348
NdeII GATC 6 cut(s) 73, 203, 271, 276, 287, 411
NlaIII CATG 4 cut(s) 22, 192, 297, 352
NlaIV GGNNCC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 399
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 25, 135, 346
PleI GAGTC 2 cut(s) 151, 347
PpsI GAGTC 2 cut(s) 151, 347
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 2 cut(s) 276, 287
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 3 cut(s) 24, 134, 345
Sau3AI GATC 6 cut(s) 73, 203, 271, 276, 287, 411
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 151, 347
ScrFI CCNGG 1 cut(s) 269
SetI ASST 5 cut(s) 72, 100, 135, 328, 492
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 358
Sse9I AATT 1 cut(s) 48
SsiI CCGC 4 cut(s) 141, 193, 344, 415
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 4 cut(s) 18, 293, 348, 451
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 28, 72
TaqII GACCGA 2 cut(s) 97, 346
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 399
TscAI CASTG 1 cut(s) 396
TseI GCWGC 2 cut(s) 23, 133
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 358
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.