Rmu_sc0010334.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010334.1
OG0000187
Physical Location & Seq
Forward (+)
22947 .. 23795
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010334.1_g000003.1.cds

Sequence Viewer

Length: 849 bp
atgacttctgttgatgccatggttgctcgactggcttcttctcttacaattgctgaggggaggaaacaggtcaatctgcgaccgacgcaaggaaaaggtatgcgacaggtagatgtgtttatgttggggaagctgctgaccgctcgggagtacaagactcgctcctttatggggatgttccgcaatgcatggcgggtgaatggatcactaagggtggaggaagcggagggacagagggttctcatcactttgtcggacgctactgaccgggatcggatctggaagggatctccatggggatataatcacgctccgattgccctagcttgctatgatggtgtggcggccatggactcagtccctttcaccatatcctcatactggattacactgcaaggaatccctcctgcgtttcgctcggagagggtgatgactatgattgggtttacccttggtgatttcaaggagattgataaacaggccaagaaggttggaaagctccgaatcagggtggagatccctttcaaccggcctctgtccttccaacgctggtattgggtagaggatgaggtcgagttcctctgcaagtttcagtttgataaactttttggtcgatgctcgatttgtggctatgttactcacgtaggtctaccttgctcgggacctccattggaggagaatgatgtggcaggacgcacggttctggatgcgtcacagatggggcaccctaactcgacctctggttcggcatcatctagcatagtgtgtgcaggaactcgggctagggtttgcatgggaggtccggatgtggtcttccgtactgtgcttcccaaccaactgccggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

9.11

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 723
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 802
AciI CCGC 5 cut(s) 141, 181, 193, 224, 344
AclWI GGATC 5 cut(s) 211, 279, 284, 295, 511
AcoI YGGCCR 1 cut(s) 345
AfaI GTAC 2 cut(s) 152, 820
AfiI CCNNNNNNNGG 6 cut(s) 89, 171, 381, 508, 659, 841
AgsI TTSAA 2 cut(s) 463, 526
AloI GAACNNNNNNTCC 4 cut(s) 222, 254, 684, 716
AluBI AGCT 3 cut(s) 133, 326, 499
AluI AGCT 3 cut(s) 133, 326, 499
AlwI GGATC 5 cut(s) 211, 279, 284, 295, 511
Ama87I CYCGRG 3 cut(s) 144, 658, 777
Aor13HI TCCGGA 1 cut(s) 802
AoxI GGCC 3 cut(s) 345, 480, 530
ApeKI GCWGC 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AspS9I GGNCC 2 cut(s) 662, 800
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 208, 358, 439, 467
AvaI CYCGRG 3 cut(s) 144, 658, 777
AvaII GGWCC 2 cut(s) 662, 800
BaeGI GKGCMC 1 cut(s) 726
BanI GGYRCC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 329, 712
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 3 cut(s) 323, 756, 783
BisI GCNGC 2 cut(s) 134, 345
BlsI GCNGC 2 cut(s) 135, 346
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 2 cut(s) 662, 800
BmeT110I CYCGRG 3 cut(s) 144, 658, 777
BmgT120I GGNCC 2 cut(s) 662, 800
BmiI GGNNCC 2 cut(s) 663, 725
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 4 cut(s) 4, 605, 697, 758
BpiI GAAGAC 1 cut(s) 805
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 643
BsaJI CCNNGG 4 cut(s) 18, 293, 348, 451
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 171, 381, 508, 659, 841
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 2 cut(s) 36, 386
Bse3DI GCAATG 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 802
BseDI CCNNGG 4 cut(s) 18, 293, 348, 451
BseGI GGATG 4 cut(s) 180, 571, 712, 811
BseLI CCNNNNNNNGG 6 cut(s) 89, 171, 381, 508, 659, 841
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 45, 369
BseNI ACTGG 2 cut(s) 36, 386
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 789
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 347, 482, 532
BshNI GGYRCC 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 83
BsiHKCI CYCGRG 3 cut(s) 144, 658, 777
BsiSI CCGG 4 cut(s) 268, 529, 803, 842
BslFI GGGAC 3 cut(s) 243, 344, 675
BslI CCNNNNNNNGG 6 cut(s) 89, 171, 381, 508, 659, 841
BsmFI GGGAC 3 cut(s) 243, 344, 675
BsnI GGCC 3 cut(s) 347, 482, 532
BsoBI CYCGRG 3 cut(s) 144, 658, 777
Bsp1286I GDGCHC 1 cut(s) 726
Bsp13I TCCGGA 1 cut(s) 802
Bsp143I GATC 5 cut(s) 203, 271, 276, 287, 516
Bsp19I CCATGG 3 cut(s) 18, 293, 348
BspACI CCGC 5 cut(s) 141, 181, 193, 224, 344
BspANI GGCC 3 cut(s) 347, 482, 532
BspCNI CTCAG 2 cut(s) 46, 368
BspEI TCCGGA 1 cut(s) 802
BspLI GGNNCC 2 cut(s) 663, 725
BspPI GGATC 5 cut(s) 211, 279, 284, 295, 511
BspT107I GGYRCC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 528
BsrI ACTGG 2 cut(s) 36, 386
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 4 cut(s) 18, 293, 348, 451
BssMI GATC 5 cut(s) 203, 271, 276, 287, 516
BssT1I CCWWGG 4 cut(s) 18, 293, 348, 451
Bst4CI ACNGT 2 cut(s) 700, 823
BstBAI YACGTR 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 3 cut(s) 54, 209, 355
BstDSI CCRYGG 3 cut(s) 18, 293, 348
BstF5I GGATG 4 cut(s) 180, 571, 712, 811
BstKTI GATC 5 cut(s) 206, 274, 279, 290, 519
BstMBI GATC 5 cut(s) 203, 271, 276, 287, 516
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
BstSCI CCNGG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 805
BstX2I RGATCY 3 cut(s) 276, 287, 516
BstYI RGATCY 3 cut(s) 276, 287, 516
BsuRI GGCC 3 cut(s) 347, 482, 532
BtgI CCRYGG 3 cut(s) 18, 293, 348
BtsCI GGATG 4 cut(s) 180, 571, 712, 811
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 2 cut(s) 662, 800
CseI GACGC 4 cut(s) 94, 266, 699, 702
Csp6I GTAC 2 cut(s) 151, 819
CviAII CATG 5 cut(s) 19, 189, 294, 349, 793
CviJI RGCY 9 cut(s) 35, 133, 326, 347, 482, 499, 532, 630, 782
CviKI_1 RGCY 9 cut(s) 35, 133, 326, 347, 482, 499, 532, 630, 782
CviQI GTAC 2 cut(s) 151, 819
DdeI CTNAG 3 cut(s) 54, 209, 355
DpnI GATC 5 cut(s) 205, 273, 278, 289, 518
DpnII GATC 5 cut(s) 203, 271, 276, 287, 516
EaeI YGGCCR 1 cut(s) 345
Eco130I CCWWGG 4 cut(s) 18, 293, 348, 451
Eco47I GGWCC 2 cut(s) 662, 800
Eco88I CYCGRG 3 cut(s) 144, 658, 777
EcoO109I RGGNCCY 1 cut(s) 662
EcoT14I CCWWGG 4 cut(s) 18, 293, 348, 451
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 4 cut(s) 18, 293, 348, 451
FaeI CATG 5 cut(s) 22, 192, 297, 352, 796
FaqI GGGAC 3 cut(s) 243, 344, 675
FatI CATG 5 cut(s) 18, 188, 293, 348, 792
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 134, 345
FokI GGATG 4 cut(s) 187, 578, 719, 818
Fsp4HI GCNGC 2 cut(s) 134, 345
FspBI CTAG 3 cut(s) 323, 756, 783
GluI GCNGC 2 cut(s) 134, 345
HaeIII GGCC 3 cut(s) 347, 482, 532
HapII CCGG 4 cut(s) 268, 529, 803, 842
HgaI GACGC 4 cut(s) 94, 266, 699, 702
Hin1II CATG 5 cut(s) 22, 192, 297, 352, 796
HinfI GANTC 4 cut(s) 157, 353, 399, 504
HpaII CCGG 4 cut(s) 268, 529, 803, 842
HphI GGTGA 4 cut(s) 208, 358, 439, 467
Hpy166II GTNNAC 2 cut(s) 447, 650
Hpy188I TCNGA 5 cut(s) 256, 276, 315, 421, 503
Hpy188III TCNNGA 5 cut(s) 146, 280, 660, 704, 803
Hpy8I GTNNAC 2 cut(s) 447, 650
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 277, 481, 550
HpyCH4III ACNGT 2 cut(s) 700, 823
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 5 cut(s) 188, 394, 585, 770, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
HpyF3I CTNAG 3 cut(s) 54, 209, 355
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 5 cut(s) 22, 192, 297, 352, 796
Kpn2I TCCGGA 1 cut(s) 802
Kzo9I GATC 5 cut(s) 203, 271, 276, 287, 516
LmnI GCTCC 3 cut(s) 167, 316, 504
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 4 cut(s) 4, 605, 697, 758
MaeI CTAG 3 cut(s) 323, 756, 783
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 2 cut(s) 634, 711
MalI GATC 5 cut(s) 205, 273, 278, 289, 518
MbiI CCGCTC 1 cut(s) 143
MboI GATC 5 cut(s) 203, 271, 276, 287, 516
MboII GAAGA 2 cut(s) 30, 805
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 3 cut(s) 276, 287, 516
MhlI GDGCHC 1 cut(s) 726
MluCI AATT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 151, 347
MmeI TCCRAC 3 cut(s) 234, 472, 568
Mph1103I ATGCAT 1 cut(s) 190
MroI TCCGGA 1 cut(s) 802
MspI CCGG 4 cut(s) 268, 529, 803, 842
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 3 cut(s) 18, 293, 348
NdeII GATC 5 cut(s) 203, 271, 276, 287, 516
NlaIII CATG 5 cut(s) 22, 192, 297, 352, 796
NlaIV GGNNCC 2 cut(s) 663, 725
NmuCI GTSAC 1 cut(s) 711
NsiI ATGCAT 1 cut(s) 190
PfeI GAWTC 2 cut(s) 399, 504
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 135, 346
PleI GAGTC 2 cut(s) 151, 347
PpsI GAGTC 2 cut(s) 151, 347
Ppu21I YACGTR 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 663, 725
PspPI GGNCC 2 cut(s) 662, 800
PspPPI RGGWCCY 1 cut(s) 662
PsuI RGATCY 3 cut(s) 276, 287, 516
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 2 cut(s) 152, 820
RsaNI GTAC 2 cut(s) 151, 819
SatI GCNGC 2 cut(s) 134, 345
Sau3AI GATC 5 cut(s) 203, 271, 276, 287, 516
Sau96I GGNCC 2 cut(s) 662, 800
SchI GAGTC 2 cut(s) 151, 347
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 4 cut(s) 4, 605, 697, 758
SinI GGWCC 2 cut(s) 662, 800
Sse9I AATT 1 cut(s) 48
SsiI CCGC 5 cut(s) 141, 181, 193, 224, 344
SspMI CTAG 3 cut(s) 323, 756, 783
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 4 cut(s) 18, 293, 348, 451
TaaI ACNGT 2 cut(s) 700, 823
TaiI ACGT 1 cut(s) 645
TaqI TCGA 5 cut(s) 28, 573, 613, 620, 734
TaqII GACCGA 1 cut(s) 97
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 399, 504
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 711
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 662, 800
XmiI GTMKAC 1 cut(s) 649
XspI CTAG 3 cut(s) 323, 756, 783
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.