Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 387 |
| AccB1I | GGYRCC | 1 cut(s) | 222 |
| AcoI | YGGCCR | 1 cut(s) | 101 |
| AcyI | GRCGYC | 1 cut(s) | 388 |
| AfaI | GTAC | 1 cut(s) | 319 |
| AluBI | AGCT | 3 cut(s) | 70, 248, 395 |
| AluI | AGCT | 3 cut(s) | 70, 248, 395 |
| Ama87I | CYCGRG | 1 cut(s) | 238 |
| AoxI | GGCC | 2 cut(s) | 51, 101 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 161, 193 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 203 |
| AsuII | TTCGAA | 1 cut(s) | 73 |
| AvaI | CYCGRG | 1 cut(s) | 238 |
| BanI | GGYRCC | 1 cut(s) | 222 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 365, 399 |
| BfaI | CTAG | 3 cut(s) | 219, 255, 282 |
| BmeT110I | CYCGRG | 1 cut(s) | 238 |
| BmiI | GGNNCC | 1 cut(s) | 224 |
| BmsI | GCATC | 2 cut(s) | 176, 363 |
| Bpu14I | TTCGAA | 1 cut(s) | 73 |
| BsaHI | GRCGYC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 2 cut(s) | 237, 383 |
| Bse118I | RCCGGY | 1 cut(s) | 99 |
| Bse3DI | GCAATG | 1 cut(s) | 372 |
| BseDI | CCNNGG | 2 cut(s) | 237, 383 |
| BseMI | GCAATG | 1 cut(s) | 372 |
| BshFI | GGCC | 2 cut(s) | 53, 103 |
| BshNI | GGYRCC | 1 cut(s) | 222 |
| BsiHKCI | CYCGRG | 1 cut(s) | 238 |
| BsiSI | CCGG | 1 cut(s) | 100 |
| BsmI | GAATGC | 1 cut(s) | 271 |
| BsnI | GGCC | 2 cut(s) | 53, 103 |
| BsoBI | CYCGRG | 1 cut(s) | 238 |
| Bsp119I | TTCGAA | 1 cut(s) | 73 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| BspANI | GGCC | 2 cut(s) | 53, 103 |
| BspLI | GGNNCC | 1 cut(s) | 224 |
| BspT104I | TTCGAA | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 1 cut(s) | 372 |
| BsrFI | RCCGGY | 1 cut(s) | 99 |
| BssAI | RCCGGY | 1 cut(s) | 99 |
| BssECI | CCNNGG | 2 cut(s) | 237, 383 |
| BssMI | GATC | 1 cut(s) | 9 |
| BssNI | GRCGYC | 1 cut(s) | 388 |
| Bst4CI | ACNGT | 3 cut(s) | 108, 262, 322 |
| BstACI | GRCGYC | 1 cut(s) | 388 |
| BstBI | TTCGAA | 1 cut(s) | 73 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BsuRI | GGCC | 2 cut(s) | 53, 103 |
| BtsIMutI | CAGTG | 2 cut(s) | 104, 267 |
| Cfr10I | RCCGGY | 1 cut(s) | 99 |
| CseI | GACGC | 1 cut(s) | 377 |
| Csp6I | GTAC | 1 cut(s) | 318 |
| CviAII | CATG | 1 cut(s) | 7 |
| CviJI | RGCY | 6 cut(s) | 53, 70, 103, 248, 281, 395 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 70, 103, 248, 281, 395 |
| CviQI | GTAC | 1 cut(s) | 318 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 387 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 387 |
| EaeI | YGGCCR | 1 cut(s) | 101 |
| Eco88I | CYCGRG | 1 cut(s) | 238 |
| FaeI | CATG | 1 cut(s) | 10 |
| FaiI | YATR | 3 cut(s) | 8, 357, 403 |
| FatI | CATG | 1 cut(s) | 6 |
| FspBI | CTAG | 3 cut(s) | 219, 255, 282 |
| HaeIII | GGCC | 2 cut(s) | 53, 103 |
| HapII | CCGG | 1 cut(s) | 100 |
| HgaI | GACGC | 1 cut(s) | 377 |
| Hin1I | GRCGYC | 1 cut(s) | 388 |
| Hin1II | CATG | 1 cut(s) | 10 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HinfI | GANTC | 2 cut(s) | 75, 88 |
| HpaII | CCGG | 1 cut(s) | 100 |
| HphI | GGTGA | 2 cut(s) | 38, 203 |
| Hpy188I | TCNGA | 1 cut(s) | 399 |
| Hpy188III | TCNNGA | 1 cut(s) | 232 |
| HpyAV | CCTTC | 2 cut(s) | 52, 121 |
| HpyCH4III | ACNGT | 3 cut(s) | 108, 262, 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 306 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 376 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 1 cut(s) | 306 |
| Hsp92I | GRCGYC | 1 cut(s) | 388 |
| Hsp92II | CATG | 1 cut(s) | 10 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LpnPI | CCDG | 6 cut(s) | 35, 64, 113, 255, 354, 375 |
| LweI | GCATC | 2 cut(s) | 176, 363 |
| MaeI | CTAG | 3 cut(s) | 219, 255, 282 |
| MaeII | ACGT | 1 cut(s) | 306 |
| MaeIII | GTNAC | 1 cut(s) | 205 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MluCI | AATT | 2 cut(s) | 39, 163 |
| MmeI | TCCRAC | 2 cut(s) | 43, 139 |
| MnlI | CCTC | 3 cut(s) | 247, 290, 393 |
| MseI | TTAA | 3 cut(s) | 33, 96, 162 |
| MspI | CCGG | 1 cut(s) | 100 |
| Mva1269I | GAATGC | 1 cut(s) | 271 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 1 cut(s) | 10 |
| NlaIV | GGNNCC | 1 cut(s) | 224 |
| NmeAIII | GCCGAG | 1 cut(s) | 364 |
| NspV | TTCGAA | 1 cut(s) | 73 |
| PctI | GAATGC | 1 cut(s) | 271 |
| PfeI | GAWTC | 2 cut(s) | 75, 88 |
| PspN4I | GGNNCC | 1 cut(s) | 224 |
| RsaI | GTAC | 1 cut(s) | 319 |
| RsaNI | GTAC | 1 cut(s) | 318 |
| SaqAI | TTAA | 3 cut(s) | 33, 96, 162 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| SetI | ASST | 9 cut(s) | 63, 72, 216, 228, 239, 250, 309, 385, 397 |
| SfaNI | GCATC | 2 cut(s) | 176, 363 |
| SfuI | TTCGAA | 1 cut(s) | 73 |
| Sse9I | AATT | 2 cut(s) | 39, 163 |
| SspMI | CTAG | 3 cut(s) | 219, 255, 282 |
| TaaI | ACNGT | 3 cut(s) | 108, 262, 322 |
| TaiI | ACGT | 1 cut(s) | 309 |
| TaqI | TCGA | 4 cut(s) | 12, 73, 184, 251 |
| TasI | AATT | 2 cut(s) | 39, 163 |
| TatI | WGTACW | 1 cut(s) | 317 |
| TfiI | GAWTC | 2 cut(s) | 75, 88 |
| Tru1I | TTAA | 3 cut(s) | 33, 96, 162 |
| Tru9I | TTAA | 3 cut(s) | 33, 96, 162 |
| TscAI | CASTG | 2 cut(s) | 111, 267 |
| TspDTI | ATGAA | 2 cut(s) | 153, 344 |
| TspRI | CASTG | 2 cut(s) | 111, 267 |
| XspI | CTAG | 3 cut(s) | 219, 255, 282 |