Rorug03G0254600

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
24136918 .. 24137876
959 bp
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UTR
Exon/CDS
Intron
Rorug03G0254600.1

Sequence Viewer

Length: 357 bp
ATGGGTTTGGCATCCGGTGGTAATGGAAGTGTGTATCTACCTGGAAAAGCGCAGGAGGTTGTTGAAGAAACGAGACCAGGCGACGCGAACACGAGGGTAAACACTGCCCGTGTAATTCAGGCTTTGCCGGACGATGTCTTCGATGGTCTCCACGAACAAGCTCAGGCTTCGGATCGGCGGCACGTAGAGCGTCAGAGGCACCGCCGAGAAAGCCACCGCGAATATCAGCTGAAGCATTTGATGAACCTCCTCTTGAACAAGAATATACAAACCTACACGGTTGAATCTGAGCAAACCCAAATAGACAAACTCAACCCCCACGCAATCACCAACCACAAGACTACTATTAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

7.07

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 2 cut(s) 86, 219
AciI CCGC 3 cut(s) 178, 202, 217
AclWI GGATC 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 65, 256, 284
AjnI CCWGG 2 cut(s) 40, 76
AluBI AGCT 2 cut(s) 161, 229
AluI AGCT 2 cut(s) 161, 229
Alw26I GTCTC 2 cut(s) 67, 152
AlwI GGATC 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 319
BanI GGYRCC 1 cut(s) 198
BauI CACGAG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 130
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 42, 78
BcoDI GTCTC 2 cut(s) 67, 152
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 42, 78
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 42, 78
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 184
BsaI GGTCTC 2 cut(s) 67, 152
BsaWI WCCGGW 1 cut(s) 14
BseBI CCWGG 2 cut(s) 42, 78
BseGI GGATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 176, 279
BseRI GAGGAG 1 cut(s) 239
Bsh1236I CGCG 2 cut(s) 86, 219
BshNI GGYRCC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 15, 128
BsmAI GTCTC 2 cut(s) 67, 152
Bso31I GGTCTC 2 cut(s) 67, 152
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 3 cut(s) 178, 202, 217
BspCNI CTCAG 2 cut(s) 175, 280
BspFNI CGCG 2 cut(s) 86, 219
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 2 cut(s) 67, 152
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 42, 78
Bst4CI ACNGT 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 162, 288
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 2 cut(s) 86, 219
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 67, 152
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 187, 196, 210
BstNI CCWGG 2 cut(s) 42, 78
BstSCI CCNGG 2 cut(s) 40, 76
BstUI CGCG 2 cut(s) 86, 219
BstV2I GAAGAC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
CfoI GCGC 1 cut(s) 52
CseI GACGC 2 cut(s) 92, 179
CviJI RGCY 5 cut(s) 122, 161, 167, 213, 229
CviKI_1 RGCY 5 cut(s) 122, 161, 167, 213, 229
DdeI CTNAG 2 cut(s) 162, 288
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco31I GGTCTC 2 cut(s) 67, 152
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 40, 76
FaiI YATR 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 179
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 179
HapII CCGG 2 cut(s) 15, 128
HgaI GACGC 2 cut(s) 92, 179
HhaI GCGC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 284
HpaII CCGG 2 cut(s) 15, 128
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 172, 195, 289
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 196, 210
HpyF3I CTNAG 2 cut(s) 162, 288
HpySE526I ACGT 1 cut(s) 183
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 27, 28, 38, 54, 63, 90, 104, 141, 149
LweI GCATC 1 cut(s) 20
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 77, 130
MluCI AATT 1 cut(s) 114
MnlI CCTC 5 cut(s) 49, 87, 189, 257, 260
MseI TTAA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 2 cut(s) 15, 128
MspR9I CCNGG 2 cut(s) 42, 78
MvaI CCWGG 2 cut(s) 42, 78
MvnI CGCG 2 cut(s) 86, 219
MwoI GCNNNNNNNGC 3 cut(s) 187, 196, 210
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 180
Ppu21I YACGTR 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 40, 76
PspGI CCWGG 2 cut(s) 40, 76
PspN4I GGNNCC 1 cut(s) 200
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 42, 78
SetI ASST 7 cut(s) 43, 60, 163, 186, 231, 249, 275
SfaNI GCATC 1 cut(s) 20
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 178, 202, 217
StyD4I CCNGG 2 cut(s) 40, 76
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 114
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.