FvH4_4g06831

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000187
Physical Location & Seq
Forward (+)
6134762 .. 6135537
776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06831.t1

Sequence Viewer

Length: 417 bp
ATGGCTGCACGTCTTGCTTCCTCTCTTGCCTTGGCGGAAGGGAAGAAAAGCGTGATTTGCGTCAGGCGAATGGCAAAGGACATGCCAACCGGACATGTTCATATATGGTGGATGGATTGCTGCAGCCTGCAGGTAGAGGAGGCGGAAGTGAAACGGGTCCTCTTCACTTTCTCGGACCCGAAAGACAGAGATTTGGTTCGGAAGGGCGGCCATTGGGGATTTCACAGAGCTCTAGTGGTGCTCGCCTACTATGATGGTGTCGCGGCCATTGACAAGGTTCCACTGGGGACTATGAATATCATGGTGGATCAAGAACAACAGACAATCATAGGCAAGAGGCAAGGACGTATAGTGGTTCACCATGCCATCGGAGGACATGGCTACATCCACTTAAGTTTCTACTATCATGGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

9.07

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 1 cut(s) 263
AciI CCGC 4 cut(s) 35, 143, 207, 263
AclWI GGATC 1 cut(s) 315
AcoI YGGCCR 3 cut(s) 208, 264, 409
AflII CTTAAG 1 cut(s) 391
AflIII ACRYGT 1 cut(s) 94
AjiI CACGTC 1 cut(s) 11
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 2 cut(s) 232, 243
AlwI GGATC 1 cut(s) 315
AoxI GGCC 3 cut(s) 208, 264, 409
ApeKI GCWGC 3 cut(s) 5, 120, 123
AspS9I GGNCC 2 cut(s) 157, 175
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 157, 175
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 232, 243
BbvI GCAGC 2 cut(s) 107, 135
BccI CCATC 3 cut(s) 106, 248, 374
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 2 cut(s) 121, 128
BfrI CTTAAG 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 5 cut(s) 6, 121, 124, 208, 264
BlsI GCNGC 5 cut(s) 7, 122, 125, 209, 265
Bme18I GGWCC 2 cut(s) 157, 175
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 157, 175
BmiI GGNNCC 3 cut(s) 158, 177, 279
BmrI ACTGGG 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 288, 412
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 117, 384
BseNI ACTGG 2 cut(s) 288, 412
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 107, 135
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 3 cut(s) 210, 266, 411
BsiHKAI GWGCWC 2 cut(s) 232, 243
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 3 cut(s) 210, 266, 411
Bsp1286I GDGCHC 2 cut(s) 232, 243
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 4 cut(s) 35, 143, 207, 263
BspANI GGCC 3 cut(s) 210, 266, 411
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 158, 177, 279
BspMAI CTGCAG 2 cut(s) 125, 132
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 391
BsrI ACTGG 2 cut(s) 288, 412
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 128, 243
BstF5I GGATG 2 cut(s) 117, 384
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 14, 57
BstNSI RCATGY 2 cut(s) 85, 98
BstSFI CTRYAG 2 cut(s) 121, 128
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 107, 135
BsuRI GGCC 3 cut(s) 210, 266, 411
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 117, 384
BtsIMutI CAGTG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 128, 243
Cfr13I GGNCC 2 cut(s) 157, 175
CseI GACGC 1 cut(s) 49
CviAII CATG 6 cut(s) 82, 95, 301, 362, 377, 407
CviJI RGCY 7 cut(s) 5, 126, 210, 230, 266, 381, 411
CviKI_1 RGCY 7 cut(s) 5, 126, 210, 230, 266, 381, 411
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 3 cut(s) 208, 264, 409
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 2 cut(s) 50, 158
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 157, 175
Eco53kI GAGCTC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 6 cut(s) 85, 98, 304, 365, 380, 410
FaqI GGGAC 1 cut(s) 301
FatI CATG 6 cut(s) 81, 94, 300, 361, 376, 406
Fnu4HI GCNGC 5 cut(s) 6, 121, 124, 208, 264
FokI GGATG 2 cut(s) 124, 371
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 5 cut(s) 6, 121, 124, 208, 264
FspBI CTAG 1 cut(s) 233
GluI GCNGC 5 cut(s) 6, 121, 124, 208, 264
HaeIII GGCC 3 cut(s) 210, 266, 411
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 49
Hin1II CATG 6 cut(s) 85, 98, 304, 365, 380, 410
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 175, 201, 371
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 2 cut(s) 32, 196
HpyCH4IV ACGT 2 cut(s) 10, 346
HpyCH4V TGCA 3 cut(s) 8, 123, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 57
HpySE526I ACGT 2 cut(s) 10, 346
Hsp92II CATG 6 cut(s) 85, 98, 304, 365, 380, 410
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 49, 103, 116, 140, 269
Lsp1109I GCAGC 2 cut(s) 107, 135
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 10, 346
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 55, 154
MhlI GDGCHC 2 cut(s) 232, 243
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MnlI CCTC 6 cut(s) 31, 130, 133, 170, 330, 365
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 391
MspI CCGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 14, 57
NdeII GATC 1 cut(s) 307
NlaIII CATG 6 cut(s) 85, 98, 304, 365, 380, 410
NlaIV GGNNCC 3 cut(s) 158, 177, 279
NspI RCATGY 2 cut(s) 85, 98
PciI ACATGT 1 cut(s) 94
PkrI GCNGC 5 cut(s) 7, 122, 125, 209, 265
PpuMI RGGWCCY 1 cut(s) 157
PscI ACATGT 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 158, 177, 279
PspPI GGNCC 2 cut(s) 157, 175
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 2 cut(s) 125, 132
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 5 cut(s) 6, 121, 124, 208, 264
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 157, 175
SbfI CCTGCAGG 1 cut(s) 132
SdaI CCTGCAGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 232, 243
SetI ASST 5 cut(s) 13, 135, 232, 279, 349
SfcI CTRYAG 2 cut(s) 121, 128
SinI GGWCC 2 cut(s) 157, 175
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse8387I CCTGCAGG 1 cut(s) 132
SsiI CCGC 4 cut(s) 35, 143, 207, 263
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 232
StyI CCWWGG 1 cut(s) 30
TaiI ACGT 2 cut(s) 13, 349
TauI GCSGC 2 cut(s) 210, 266
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 288
TseI GCWGC 3 cut(s) 5, 120, 123
TspDTI ATGAA 2 cut(s) 89, 308
TspRI CASTG 1 cut(s) 288
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 157, 175
XceI RCATGY 2 cut(s) 85, 98
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.