ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 442 |
| Acc36I | ACCTGC | 2 cut(s) | 442, 730 |
| AccB1I | GGYRCC | 1 cut(s) | 385 |
| AciI | CCGC | 4 cut(s) | 60, 710, 713, 753 |
| AclI | AACGTT | 1 cut(s) | 574 |
| AclWI | GGATC | 4 cut(s) | 50, 278, 419, 755 |
| AcsI | RAATTY | 1 cut(s) | 614 |
| AcuI | CTGAAG | 3 cut(s) | 159, 273, 797 |
| AfaI | GTAC | 1 cut(s) | 527 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 116, 301, 408, 535 |
| AgsI | TTSAA | 5 cut(s) | 181, 245, 572, 804, 822 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 40, 765 |
| AjnI | CCWGG | 1 cut(s) | 215 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 374, 406 |
| AluBI | AGCT | 3 cut(s) | 251, 299, 796 |
| AluI | AGCT | 3 cut(s) | 251, 299, 796 |
| Alw21I | GWGCWC | 1 cut(s) | 340 |
| AlwI | GGATC | 4 cut(s) | 50, 278, 419, 755 |
| AoxI | GGCC | 2 cut(s) | 557, 707 |
| ApeKI | GCWGC | 4 cut(s) | 418, 686, 785, 796 |
| ApoI | RAATTY | 1 cut(s) | 614 |
| AspA2I | CCTAGG | 1 cut(s) | 196 |
| AspLEI | GCGC | 2 cut(s) | 317, 696 |
| AspS9I | GGNCC | 2 cut(s) | 184, 707 |
| AsuHPI | GGTGA | 3 cut(s) | 406, 466, 655 |
| AvaII | GGWCC | 1 cut(s) | 184 |
| AvrII | CCTAGG | 1 cut(s) | 196 |
| BaeGI | GKGCMC | 1 cut(s) | 830 |
| BanI | GGYRCC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 1 cut(s) | 340 |
| BbvI | GCAGC | 4 cut(s) | 405, 673, 783, 797 |
| BccI | CCATC | 2 cut(s) | 32, 118 |
| BciT130I | CCWGG | 1 cut(s) | 217 |
| BclI | TGATCA | 2 cut(s) | 552, 660 |
| BfaI | CTAG | 5 cut(s) | 171, 197, 300, 762, 809 |
| BfmI | CTRYAG | 3 cut(s) | 288, 419, 687 |
| BfuAI | ACCTGC | 2 cut(s) | 442, 730 |
| BglII | AGATCT | 2 cut(s) | 100, 443 |
| BisI | GCNGC | 7 cut(s) | 419, 687, 710, 713, 754, 786, 797 |
| BlnI | CCTAGG | 1 cut(s) | 196 |
| BlsI | GCNGC | 7 cut(s) | 420, 688, 711, 714, 755, 787, 798 |
| Bme1390I | CCNGG | 1 cut(s) | 217 |
| Bme18I | GGWCC | 1 cut(s) | 184 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 40, 765 |
| BmgT120I | GGNCC | 2 cut(s) | 184, 707 |
| BmiI | GGNNCC | 1 cut(s) | 387 |
| BmrFI | CCNGG | 1 cut(s) | 217 |
| BmsI | GCATC | 1 cut(s) | 673 |
| BpmI | CTGGAG | 1 cut(s) | 238 |
| Bpu10I | CCTNAGC | 1 cut(s) | 723 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 196, 320 |
| BsaWI | WCCGGW | 1 cut(s) | 528 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 249, 279 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 116, 301, 408, 535 |
| Bse118I | RCCGGY | 1 cut(s) | 715 |
| BseBI | CCWGG | 1 cut(s) | 217 |
| BseDI | CCNNGG | 3 cut(s) | 13, 196, 320 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 116, 301, 408, 535 |
| BseMII | CTCAG | 2 cut(s) | 345, 737 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BseSI | GKGCMC | 1 cut(s) | 830 |
| BseXI | GCAGC | 4 cut(s) | 405, 673, 783, 797 |
| BshFI | GGCC | 2 cut(s) | 559, 709 |
| BshNI | GGYRCC | 1 cut(s) | 385 |
| BsiHKAI | GWGCWC | 1 cut(s) | 340 |
| BsiSI | CCGG | 2 cut(s) | 529, 716 |
| BslFI | GGGAC | 2 cut(s) | 244, 497 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 116, 301, 408, 535 |
| BsmFI | GGGAC | 2 cut(s) | 244, 497 |
| BsnI | GGCC | 2 cut(s) | 559, 709 |
| Bsp1286I | GDGCHC | 2 cut(s) | 340, 830 |
| Bsp19I | CCATGG | 1 cut(s) | 320 |
| BspACI | CCGC | 4 cut(s) | 60, 710, 713, 753 |
| BspANI | GGCC | 2 cut(s) | 559, 709 |
| BspCNI | CTCAG | 2 cut(s) | 346, 736 |
| BspLI | GGNNCC | 1 cut(s) | 387 |
| BspMAI | CTGCAG | 2 cut(s) | 423, 691 |
| BspMI | ACCTGC | 2 cut(s) | 442, 730 |
| BspPI | GGATC | 4 cut(s) | 50, 278, 419, 755 |
| BspT107I | GGYRCC | 1 cut(s) | 385 |
| BsrFI | RCCGGY | 1 cut(s) | 715 |
| BssAI | RCCGGY | 1 cut(s) | 715 |
| BssECI | CCNNGG | 3 cut(s) | 13, 196, 320 |
| BssT1I | CCWWGG | 3 cut(s) | 13, 196, 320 |
| Bst2UI | CCWGG | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 4 cut(s) | 335, 598, 700, 832 |
| BstC8I | GCNNGC | 1 cut(s) | 128 |
| BstDEI | CTNAG | 2 cut(s) | 354, 723 |
| BstDSI | CCRYGG | 1 cut(s) | 320 |
| BstHHI | GCGC | 2 cut(s) | 317, 696 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 344 |
| BstNI | CCWGG | 1 cut(s) | 217 |
| BstSCI | CCNGG | 1 cut(s) | 215 |
| BstSFI | CTRYAG | 3 cut(s) | 288, 419, 687 |
| BstSLI | GKGCMC | 1 cut(s) | 830 |
| BstV1I | GCAGC | 4 cut(s) | 405, 673, 783, 797 |
| BstX2I | RGATCY | 4 cut(s) | 55, 100, 283, 443 |
| BstYI | RGATCY | 4 cut(s) | 55, 100, 283, 443 |
| BsuRI | GGCC | 2 cut(s) | 559, 709 |
| BtgI | CCRYGG | 1 cut(s) | 320 |
| BtgZI | GCGATG | 1 cut(s) | 96 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 1 cut(s) | 165 |
| BveI | ACCTGC | 2 cut(s) | 442, 730 |
| Cac8I | GCNNGC | 1 cut(s) | 128 |
| CfoI | GCGC | 2 cut(s) | 317, 696 |
| Cfr10I | RCCGGY | 1 cut(s) | 715 |
| Cfr13I | GGNCC | 2 cut(s) | 184, 707 |
| CseI | GACGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 526 |
| CviAII | CATG | 4 cut(s) | 321, 668, 736, 790 |
| CviQI | GTAC | 1 cut(s) | 526 |
| DdeI | CTNAG | 2 cut(s) | 354, 723 |
| DriI | GACNNNNNGTC | 2 cut(s) | 40, 765 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 40, 765 |
| Eco130I | CCWWGG | 3 cut(s) | 13, 196, 320 |
| Eco47I | GGWCC | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 273, 797 |
| EcoRII | CCWGG | 1 cut(s) | 215 |
| EcoT14I | CCWWGG | 3 cut(s) | 13, 196, 320 |
| ErhI | CCWWGG | 3 cut(s) | 13, 196, 320 |
| FaeI | CATG | 4 cut(s) | 324, 671, 739, 793 |
| FaqI | GGGAC | 2 cut(s) | 244, 497 |
| FatI | CATG | 4 cut(s) | 320, 667, 735, 789 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FbaI | TGATCA | 2 cut(s) | 552, 660 |
| Fnu4HI | GCNGC | 7 cut(s) | 419, 687, 710, 713, 754, 786, 797 |
| Fsp4HI | GCNGC | 7 cut(s) | 419, 687, 710, 713, 754, 786, 797 |
| FspBI | CTAG | 5 cut(s) | 171, 197, 300, 762, 809 |
| GlaI | GCGC | 2 cut(s) | 316, 695 |
| GluI | GCNGC | 7 cut(s) | 419, 687, 710, 713, 754, 786, 797 |
| GsuI | CTGGAG | 1 cut(s) | 238 |
| HaeIII | GGCC | 2 cut(s) | 559, 709 |
| HapII | CCGG | 2 cut(s) | 529, 716 |
| HgaI | GACGC | 1 cut(s) | 241 |
| HhaI | GCGC | 2 cut(s) | 317, 696 |
| Hin1II | CATG | 4 cut(s) | 324, 671, 739, 793 |
| Hin6I | GCGC | 2 cut(s) | 315, 694 |
| HinP1I | GCGC | 2 cut(s) | 315, 694 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HinfI | GANTC | 2 cut(s) | 532, 544 |
| HpaII | CCGG | 2 cut(s) | 529, 716 |
| HphI | GGTGA | 3 cut(s) | 406, 466, 655 |
| Hpy166II | GTNNAC | 2 cut(s) | 34, 273 |
| Hpy188I | TCNGA | 6 cut(s) | 139, 283, 448, 470, 552, 777 |
| Hpy188III | TCNNGA | 2 cut(s) | 491, 745 |
| Hpy8I | GTNNAC | 2 cut(s) | 34, 273 |
| HpyAV | CCTTC | 6 cut(s) | 88, 202, 248, 376, 508, 772 |
| HpyCH4III | ACNGT | 4 cut(s) | 335, 598, 700, 832 |
| HpyCH4IV | ACGT | 2 cut(s) | 476, 574 |
| HpyCH4V | TGCA | 7 cut(s) | 52, 82, 421, 612, 689, 739, 785 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 2 cut(s) | 354, 723 |
| HpySE526I | ACGT | 2 cut(s) | 476, 574 |
| Hsp92II | CATG | 4 cut(s) | 324, 671, 739, 793 |
| HspAI | GCGC | 2 cut(s) | 315, 694 |
| Ksp22I | TGATCA | 2 cut(s) | 552, 660 |
| LmnI | GCTCC | 1 cut(s) | 343 |
| Lsp1109I | GCAGC | 4 cut(s) | 405, 673, 783, 797 |
| LweI | GCATC | 1 cut(s) | 673 |
| MaeI | CTAG | 5 cut(s) | 171, 197, 300, 762, 809 |
| MaeII | ACGT | 2 cut(s) | 476, 574 |
| MboII | GAAGA | 5 cut(s) | 100, 103, 257, 523, 689 |
| MfeI | CAATTG | 1 cut(s) | 375 |
| MflI | RGATCY | 4 cut(s) | 55, 100, 283, 443 |
| MhlI | GDGCHC | 2 cut(s) | 340, 830 |
| MluCI | AATT | 3 cut(s) | 375, 614, 804 |
| MmeI | TCCRAC | 2 cut(s) | 133, 652 |
| MnlI | CCTC | 8 cut(s) | 173, 213, 251, 303, 412, 558, 583, 633 |
| MseI | TTAA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 1 cut(s) | 753 |
| MspI | CCGG | 2 cut(s) | 529, 716 |
| MspR9I | CCNGG | 1 cut(s) | 217 |
| MunI | CAATTG | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 344 |
| NcoI | CCATGG | 1 cut(s) | 320 |
| NlaIII | CATG | 4 cut(s) | 324, 671, 739, 793 |
| NlaIV | GGNNCC | 1 cut(s) | 387 |
| PaqCI | CACCTGC | 1 cut(s) | 442 |
| PfeI | GAWTC | 2 cut(s) | 532, 544 |
| PkrI | GCNGC | 7 cut(s) | 420, 688, 711, 714, 755, 787, 798 |
| Psp1406I | AACGTT | 1 cut(s) | 574 |
| Psp6I | CCWGG | 1 cut(s) | 215 |
| PspGI | CCWGG | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 1 cut(s) | 387 |
| PspPI | GGNCC | 2 cut(s) | 184, 707 |
| PstI | CTGCAG | 2 cut(s) | 423, 691 |
| PsuI | RGATCY | 4 cut(s) | 55, 100, 283, 443 |
| RsaI | GTAC | 1 cut(s) | 527 |
| RsaNI | GTAC | 1 cut(s) | 526 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| SatI | GCNGC | 7 cut(s) | 419, 687, 710, 713, 754, 786, 797 |
| Sau96I | GGNCC | 2 cut(s) | 184, 707 |
| ScrFI | CCNGG | 1 cut(s) | 217 |
| SduI | GDGCHC | 2 cut(s) | 340, 830 |
| SfaNI | GCATC | 1 cut(s) | 673 |
| SfcI | CTRYAG | 3 cut(s) | 288, 419, 687 |
| SinI | GGWCC | 1 cut(s) | 184 |
| Sse9I | AATT | 3 cut(s) | 375, 614, 804 |
| SsiI | CCGC | 4 cut(s) | 60, 710, 713, 753 |
| SspMI | CTAG | 5 cut(s) | 171, 197, 300, 762, 809 |
| StyD4I | CCNGG | 1 cut(s) | 215 |
| StyI | CCWWGG | 3 cut(s) | 13, 196, 320 |
| TaaI | ACNGT | 4 cut(s) | 335, 598, 700, 832 |
| TaiI | ACGT | 2 cut(s) | 479, 577 |
| TaqI | TCGA | 1 cut(s) | 208 |
| TaqII | GACCGA | 1 cut(s) | 309 |
| TasI | AATT | 3 cut(s) | 375, 614, 804 |
| TauI | GCSGC | 3 cut(s) | 712, 715, 756 |
| TfiI | GAWTC | 2 cut(s) | 532, 544 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseI | GCWGC | 4 cut(s) | 418, 686, 785, 796 |
| TspDTI | ATGAA | 1 cut(s) | 806 |
| TspGWI | ACGGA | 2 cut(s) | 95, 176 |
| TspRI | CASTG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 1 cut(s) | 184 |
| XapI | RAATTY | 1 cut(s) | 614 |
| XmaJI | CCTAGG | 1 cut(s) | 196 |
| XspI | CTAG | 5 cut(s) | 171, 197, 300, 762, 809 |