Rmu_sc0009785.1_g000027

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009785.1
OG0000187
Physical Location & Seq
Reverse (-)
96925 .. 100515
3591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009785.1_g000027.1.cds

Sequence Viewer

Length: 1275 bp
atggggatgtttcgcaacgcctcgagggttaatggttcgctgcaggtggaggaagcagaaggacagagggtgttattcacgctgtcggatccgtctgatcgagttcgaatatggcggggggccccatggggggataatcacgcgccggtggctctagctttgtatgatggtatcatgccggtggagaaagtgcccctagccatggcatcatattggatatcttttcagggaataccaccagcgtttcgatctgaacgtgtcatgactatgatcggctacacgcgtggggagtttcaggagattgataagactgctcagaagactgggaaacgccagattagggttgagatacctttgcataaaccattgcctttcaagcggtggtacttggtggaagatgcggtcgagtttcgctgccaattccgttatggcaagcttttcggaagatgctctatatgtggattagtcacgcatgtgggtttgccatgctccagaccggcgttggatgaagacgatgatgaagccgagagaattattttgggatcccagaacacggtgtcggagaggagtggtgggggctcgccgggagtttggggggatcatggtccgagtggggaaccatgtttgaatgttttatttccaaagcagaagcgacatgttgtggtgcgcgaacttcaggggacagcggacactccagaacgcatcactggcaagcgtcgagccagagaagaaagcctgactatctctcctaagaaactgaaattgagcttggcggtaggtaagagaaatctcacccttgattctgaaaatcttggattggaccctaaacaggaggtgactcattctgggagtatgaagtggaagagaggacgaccttctagtagtagaaataagtcgtcgtctgatggcaagcagcagacctcaaaacatggtgaggggaaggcgaagaataagtccccaacgaagaaacaatctgtggagaaacactccaacccgaaagggacggagcgcagggtaaaccccaaaggcgaggatccgacttcgaacctggttgaggtggtggagggctcggagaaccccaagggggtcggcgccggagctggagaattcaacgaagaaggctcggagttcggcttcgcggatgttgaaagcggagtggagatcggaggattaggaagaagtaccagatatagaattcgtcccagagagccccttgaagcaacacctttgattaatcatcctaagttcataaggtggtggagggctcgaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

424

Amino Acids

47.2

Weight (kDa)

9.63

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
Image
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
AbsI CCTCGAGG 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 1091
AccII CGCG 4 cut(s) 143, 283, 669, 1139
AciI CCGC 7 cut(s) 115, 379, 401, 686, 773, 1139, 1152
AclWI GGATC 7 cut(s) 83, 96, 537, 550, 606, 1028, 1041
AcsI RAATTY 2 cut(s) 1106, 1194
AcuI CTGAAG 1 cut(s) 659
AcyI GRCGYC 1 cut(s) 1092
AfaI GTAC 2 cut(s) 386, 1183
AfiI CCNNNNNNNGG 8 cut(s) 129, 130, 202, 340, 553, 829, 1054, 1084
AflIII ACRYGT 3 cut(s) 256, 281, 655
AgsI TTSAA 5 cut(s) 376, 628, 1111, 1148, 1217
AjnI CCWGG 1 cut(s) 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 158, 436, 768, 1100
AluI AGCT 4 cut(s) 158, 436, 768, 1100
AlwI GGATC 7 cut(s) 83, 96, 537, 550, 606, 1028, 1041
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 120
ApaI GGGCCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 40, 414, 913
ApoI RAATTY 2 cut(s) 1106, 1194
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
AseI ATTAAT 1 cut(s) 1233
AspLEI GCGC 4 cut(s) 145, 669, 1011, 1094
AspS9I GGNCC 4 cut(s) 120, 121, 605, 820
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 784, 847, 944
AsuII TTCGAA 2 cut(s) 106, 1043
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 2 cut(s) 605, 820
BaeGI GKGCMC 2 cut(s) 124, 195
BamHI GGATCC 3 cut(s) 88, 542, 1033
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 5 cut(s) 124, 581, 1070, 1212, 1267
BbsI GAAGAC 2 cut(s) 326, 516
BbvI GCAGC 3 cut(s) 27, 401, 925
BccI CCATC 2 cut(s) 161, 899
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 1 cut(s) 1049
BcnI CCSGG 1 cut(s) 585
BfaI CTAG 3 cut(s) 155, 197, 879
BfmI CTRYAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 1095
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 3 cut(s) 41, 415, 914
BlsI GCNGC 3 cut(s) 42, 416, 915
Bme1390I CCNGG 2 cut(s) 585, 1049
Bme18I GGWCC 2 cut(s) 605, 820
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 4 cut(s) 120, 121, 605, 820
BmiI GGNNCC 9 cut(s) 90, 121, 122, 123, 544, 618, 822, 1035, 1093
BmrFI CCNGG 2 cut(s) 585, 1049
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 4 cut(s) 215, 388, 437, 711
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 2 cut(s) 326, 516
BplI GAGNNNNNCTC 2 cut(s) 971, 1003
BpmI CTGGAG 3 cut(s) 475, 678, 1122
Bpu14I TTCGAA 2 cut(s) 106, 1043
BpuMI CCSGG 1 cut(s) 585
BsaHI GRCGYC 1 cut(s) 1092
BsaJI CCNNGG 3 cut(s) 125, 201, 1080
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 8 cut(s) 129, 130, 202, 340, 553, 829, 1054, 1084
Bse118I RCCGGY 3 cut(s) 145, 178, 496
Bse1I ACTGG 2 cut(s) 328, 712
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 3 cut(s) 125, 201, 1080
BseGI GGATG 4 cut(s) 12, 511, 1147, 1237
BseLI CCNNNNNNNGG 8 cut(s) 129, 130, 202, 340, 553, 829, 1054, 1084
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 328, 712
BseRI GAGGAG 1 cut(s) 580
BseSI GKGCMC 2 cut(s) 124, 195
BseXI GCAGC 3 cut(s) 27, 401, 925
Bsh1236I CGCG 4 cut(s) 143, 283, 669, 1139
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 1091
BsiEI CGRYCG 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 5 cut(s) 146, 179, 497, 584, 1095
BslFI GGGAC 4 cut(s) 694, 940, 1015, 1185
BslI CCNNNNNNNGG 8 cut(s) 129, 130, 202, 340, 553, 829, 1054, 1084
BsmFI GGGAC 4 cut(s) 694, 940, 1015, 1185
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 22
Bsp119I TTCGAA 2 cut(s) 106, 1043
Bsp120I GGGCCC 1 cut(s) 120
Bsp1286I GDGCHC 6 cut(s) 124, 195, 581, 1070, 1212, 1267
Bsp143I GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
Bsp19I CCATGG 2 cut(s) 125, 201
BspACI CCGC 7 cut(s) 115, 379, 401, 686, 773, 1139, 1152
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 4 cut(s) 143, 283, 669, 1139
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 9 cut(s) 90, 121, 122, 123, 544, 618, 822, 1035, 1093
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 7 cut(s) 83, 96, 537, 550, 606, 1028, 1041
BspT104I TTCGAA 2 cut(s) 106, 1043
BspT107I GGYRCC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 3 cut(s) 145, 178, 496
BsrI ACTGG 2 cut(s) 328, 712
BssAI RCCGGY 3 cut(s) 145, 178, 496
BssECI CCNNGG 3 cut(s) 125, 201, 1080
BssMI GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
BssNI GRCGYC 1 cut(s) 1092
BssT1I CCWWGG 3 cut(s) 125, 201, 1080
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 857
BstACI GRCGYC 1 cut(s) 1092
BstBI TTCGAA 2 cut(s) 106, 1043
BstC8I GCNNGC 4 cut(s) 434, 581, 713, 911
BstDEI CTNAG 3 cut(s) 315, 750, 1242
BstDSI CCRYGG 2 cut(s) 125, 201
BstENI CCTNNNNNAGG 1 cut(s) 1052
BstF5I GGATG 4 cut(s) 12, 511, 1147, 1237
BstFNI CGCG 4 cut(s) 143, 283, 669, 1139
BstH2I RGCGCY 1 cut(s) 1095
BstHHI GCGC 4 cut(s) 145, 669, 1011, 1094
BstKTI GATC 8 cut(s) 91, 100, 251, 273, 545, 601, 1036, 1164
BstMBI GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 3 cut(s) 149, 376, 708
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 2 cut(s) 476, 659
BstSCI CCNGG 2 cut(s) 583, 1047
BstSFI CTRYAG 1 cut(s) 41
BstSLI GKGCMC 2 cut(s) 124, 195
BstUI CGCG 4 cut(s) 143, 283, 669, 1139
BstV1I GCAGC 3 cut(s) 27, 401, 925
BstV2I GAAGAC 2 cut(s) 326, 516
BstX2I RGATCY 3 cut(s) 88, 542, 1033
BstYI RGATCY 3 cut(s) 88, 542, 1033
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 2 cut(s) 125, 201
BtsCI GGATG 4 cut(s) 12, 511, 1147, 1237
BtsIMutI CAGTG 1 cut(s) 705
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 4 cut(s) 434, 581, 713, 911
CciI TCATGA 1 cut(s) 261
CfoI GCGC 4 cut(s) 145, 669, 1011, 1094
Cfr10I RCCGGY 3 cut(s) 145, 178, 496
Cfr13I GGNCC 4 cut(s) 120, 121, 605, 820
CseI GACGC 1 cut(s) 704
CsiI ACCWGGT 1 cut(s) 1047
Csp6I GTAC 2 cut(s) 385, 1182
CviQI GTAC 2 cut(s) 385, 1182
DdeI CTNAG 3 cut(s) 315, 750, 1242
DinI GGCGCC 1 cut(s) 1093
DpnI GATC 8 cut(s) 90, 99, 250, 272, 544, 600, 1035, 1163
DpnII GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
Eam1104I CTCTTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 857
Eco130I CCWWGG 3 cut(s) 125, 201, 1080
Eco24I GRGCYC 5 cut(s) 124, 581, 1070, 1212, 1267
Eco32I GATATC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 605, 820
Eco57I CTGAAG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 1052
EcoO109I RGGNCCY 2 cut(s) 120, 121
EcoRI GAATTC 2 cut(s) 1106, 1194
EcoRII CCWGG 1 cut(s) 1047
EcoRV GATATC 1 cut(s) 219
EcoT14I CCWWGG 3 cut(s) 125, 201, 1080
EcoT38I GRGCYC 5 cut(s) 124, 581, 1070, 1212, 1267
EgeI GGCGCC 1 cut(s) 1093
EheI GGCGCC 1 cut(s) 1093
ErhI CCWWGG 3 cut(s) 125, 201, 1080
FaqI GGGAC 4 cut(s) 694, 940, 1015, 1185
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 41, 415, 914
FokI GGATG 4 cut(s) 19, 518, 1154, 1224
FriOI GRGCYC 5 cut(s) 124, 581, 1070, 1212, 1267
Fsp4HI GCNGC 3 cut(s) 41, 415, 914
FspBI CTAG 3 cut(s) 155, 197, 879
GlaI GCGC 4 cut(s) 144, 668, 1010, 1093
GluI GCNGC 3 cut(s) 41, 415, 914
GsuI CTGGAG 3 cut(s) 475, 678, 1122
HaeII RGCGCY 1 cut(s) 1095
HaeIII GGCC 1 cut(s) 122
HapII CCGG 5 cut(s) 146, 179, 497, 584, 1095
HgaI GACGC 1 cut(s) 704
HhaI GCGC 4 cut(s) 145, 669, 1011, 1094
Hin1I GRCGYC 1 cut(s) 1092
Hin6I GCGC 4 cut(s) 143, 667, 1009, 1092
HinP1I GCGC 4 cut(s) 143, 667, 1009, 1092
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 2 cut(s) 800, 838
HpaII CCGG 5 cut(s) 146, 179, 497, 584, 1095
HphI GGTGA 3 cut(s) 784, 847, 944
Hpy166II GTNNAC 1 cut(s) 1018
Hpy188III TCNNGA 4 cut(s) 262, 296, 492, 695
Hpy8I GTNNAC 1 cut(s) 1018
Hpy99I CGWCG 2 cut(s) 720, 901
HpyAV CCTTC 4 cut(s) 53, 885, 934, 1112
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 43, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 376, 708
HpyF3I CTNAG 3 cut(s) 315, 750, 1242
HpySE526I ACGT 1 cut(s) 256
Hsp92I GRCGYC 1 cut(s) 1092
HspAI GCGC 4 cut(s) 143, 667, 1009, 1092
KasI GGCGCC 1 cut(s) 1091
Kzo9I GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
LmnI GCTCC 3 cut(s) 494, 1006, 1097
Lsp1109I GCAGC 3 cut(s) 27, 401, 925
LweI GCATC 4 cut(s) 215, 388, 437, 711
MabI ACCWGGT 1 cut(s) 1047
MaeI CTAG 3 cut(s) 155, 197, 879
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 466, 835
MalI GATC 8 cut(s) 90, 99, 250, 272, 544, 600, 1035, 1163
MboI GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
MflI RGATCY 3 cut(s) 88, 542, 1033
MhlI GDGCHC 6 cut(s) 124, 195, 581, 1070, 1212, 1267
MluCI AATT 5 cut(s) 419, 531, 761, 1106, 1194
MluI ACGCGT 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 1092
MlyI GAGTC 1 cut(s) 832
MmeI TCCRAC 5 cut(s) 66, 483, 540, 1014, 1061
MseI TTAA 2 cut(s) 30, 1233
MslI CAYNNNNRTG 3 cut(s) 179, 266, 473
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 5 cut(s) 146, 179, 497, 584, 1095
MspR9I CCNGG 2 cut(s) 585, 1049
MvaI CCWGG 1 cut(s) 1049
MvnI CGCG 4 cut(s) 143, 283, 669, 1139
MwoI GCNNNNNNNGC 3 cut(s) 149, 376, 708
NarI GGCGCC 1 cut(s) 1092
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 2 cut(s) 125, 201
NdeII GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
NlaIV GGNNCC 9 cut(s) 90, 121, 122, 123, 544, 618, 822, 1035, 1093
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 2 cut(s) 466, 835
NspI RCATGY 2 cut(s) 476, 659
NspV TTCGAA 2 cut(s) 106, 1043
OliI CACNNNNGTG 1 cut(s) 473
PaeR7I CTCGAG 1 cut(s) 22
PagI TCATGA 1 cut(s) 261
PaqCI CACCTGC 1 cut(s) 34
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 3 cut(s) 42, 416, 915
PleI GAGTC 1 cut(s) 832
PluTI GGCGCC 1 cut(s) 1095
PpsI GAGTC 1 cut(s) 832
PscI ACATGT 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 1233
Psp6I CCWGG 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 9 cut(s) 90, 121, 122, 123, 544, 618, 822, 1035, 1093
PspOMI GGGCCC 1 cut(s) 120
PspPI GGNCC 4 cut(s) 120, 121, 605, 820
PspXI VCTCGAGB 1 cut(s) 22
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 3 cut(s) 88, 542, 1033
RsaI GTAC 2 cut(s) 386, 1183
RsaNI GTAC 2 cut(s) 385, 1182
RseI CAYNNNNRTG 3 cut(s) 179, 266, 473
SaqAI TTAA 2 cut(s) 30, 1233
SatI GCNGC 3 cut(s) 41, 415, 914
Sau3AI GATC 8 cut(s) 88, 97, 248, 270, 542, 598, 1033, 1161
Sau96I GGNCC 4 cut(s) 120, 121, 605, 820
SchI GAGTC 1 cut(s) 832
ScrFI CCNGG 2 cut(s) 585, 1049
SduI GDGCHC 6 cut(s) 124, 195, 581, 1070, 1212, 1267
SexAI ACCWGGT 1 cut(s) 1047
SfaNI GCATC 4 cut(s) 215, 388, 437, 711
SfcI CTRYAG 1 cut(s) 41
SfoI GGCGCC 1 cut(s) 1093
Sfr274I CTCGAG 1 cut(s) 22
SfuI TTCGAA 2 cut(s) 106, 1043
SgrAI CRCCGGYG 1 cut(s) 145
SinI GGWCC 2 cut(s) 605, 820
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 3 cut(s) 179, 266, 473
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 5 cut(s) 419, 531, 761, 1106, 1194
SsiI CCGC 7 cut(s) 115, 379, 401, 686, 773, 1139, 1152
SspDI GGCGCC 1 cut(s) 1091
SspMI CTAG 3 cut(s) 155, 197, 879
StyD4I CCNGG 2 cut(s) 583, 1047
StyI CCWWGG 3 cut(s) 125, 201, 1080
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 259
TaqI TCGA 8 cut(s) 23, 100, 106, 247, 405, 718, 1043, 1267
TasI AATT 5 cut(s) 419, 531, 761, 1106, 1194
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 30, 1233
Tru9I TTAA 2 cut(s) 30, 1233
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 2 cut(s) 466, 835
TseI GCWGC 3 cut(s) 40, 414, 913
Tsp45I GTSAC 2 cut(s) 466, 835
TspDTI ATGAA 4 cut(s) 522, 534, 869, 1237
TspGWI ACGGA 3 cut(s) 81, 413, 1019
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 605, 820
VspI ATTAAT 1 cut(s) 1233
XagI CCTNNNNNAGG 1 cut(s) 1052
XapI RAATTY 2 cut(s) 1106, 1194
XceI RCATGY 2 cut(s) 476, 659
XcmI CCANNNNNNNNNTGG 2 cut(s) 425, 499
XhoI CTCGAG 1 cut(s) 22
XspI CTAG 3 cut(s) 155, 197, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.