Rmu_sc0005392.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005392.1
OG0000187
Physical Location & Seq
Forward (+)
35888 .. 36262
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005392.1_g000007.1.cds

Sequence Viewer

Length: 375 bp
atgtcttctgttgatgcaatggctgctagactagcctcctctcttgctatcgctgaaggcaagaggcagattgatctgcgaccaacgcagggcaaaggtttgcgacaggcaaacgttttcttggtgggtaagcttctcaccgctcgtgatttcaaggtcaaatccttcttggggatgttccgcaacgcctggaggattaatgggtcgttgcaggtggaggaggcagaagagcagcgggtgctcttcacgttgtcggatccggctgatcgagttcgaatctggcgtggtgctccatggggatataatcacgctccggtggctttggcttggtatgatggtgtcatgccggtggagaaggtgcctttaactaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

10.18

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 3 cut(s) 141, 181, 235
AclI AACGTT 1 cut(s) 114
AclWI GGATC 2 cut(s) 251, 264
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 89, 171
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 2 cut(s) 243, 292
AlwI GGATC 2 cut(s) 251, 264
ApeKI GCWGC 2 cut(s) 23, 232
AseI ATTAAT 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 274
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 358
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 243, 292
BbvI GCAGC 2 cut(s) 10, 244
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 190
BfaI CTAG 3 cut(s) 27, 32, 369
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 24, 233
BlsI GCNGC 2 cut(s) 25, 234
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 258, 360
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 171
Bse118I RCCGGY 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 89, 171
BseMI GCAATG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 28, 233
BseXI GCAGC 2 cut(s) 10, 244
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 243, 292
BsiSI CCGG 3 cut(s) 260, 314, 347
BslI CCNNNNNNNGG 2 cut(s) 89, 171
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 243, 292
Bsp143I GATC 3 cut(s) 73, 256, 265
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 3 cut(s) 141, 181, 235
BspLI GGNNCC 2 cut(s) 258, 360
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 2 cut(s) 251, 264
BspQI GCTCTTC 2 cut(s) 222, 248
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 3 cut(s) 73, 256, 265
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 222, 248
BstAPI GCANNNNNTGC 2 cut(s) 23, 238
BstBI TTCGAA 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 3 cut(s) 76, 259, 268
BstMBI GATC 3 cut(s) 73, 256, 265
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 238, 317
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 10, 244
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 346
CviAII CATG 2 cut(s) 294, 343
CviJI RGCY 6 cut(s) 23, 35, 133, 263, 320, 326
CviKI_1 RGCY 6 cut(s) 23, 35, 133, 263, 320, 326
DpnI GATC 3 cut(s) 75, 258, 267
DpnII GATC 3 cut(s) 73, 256, 265
Eam1104I CTCTTC 2 cut(s) 222, 248
EarI CTCTTC 2 cut(s) 222, 248
Eco130I CCWWGG 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 297, 346
FaiI YATR 4 cut(s) 295, 303, 333, 344
FatI CATG 2 cut(s) 293, 342
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 24, 233
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 24, 233
FspBI CTAG 3 cut(s) 27, 32, 369
GluI GCNGC 2 cut(s) 24, 233
GsuI CTGGAG 1 cut(s) 211
HapII CCGG 3 cut(s) 260, 314, 347
Hin1II CATG 2 cut(s) 297, 346
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 276
HpaII CCGG 3 cut(s) 260, 314, 347
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 50, 175, 349
HpyCH4IV ACGT 2 cut(s) 114, 248
HpyCH4V TGCA 2 cut(s) 17, 211
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 238, 317
HpySE526I ACGT 2 cut(s) 114, 248
Hsp92II CATG 2 cut(s) 297, 346
Kzo9I GATC 3 cut(s) 73, 256, 265
LguI GCTCTTC 2 cut(s) 222, 248
LmnI GCTCC 2 cut(s) 295, 316
LpnPI CCDG 9 cut(s) 74, 92, 175, 197, 202, 265, 273, 327, 360
Lsp1109I GCAGC 2 cut(s) 10, 244
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 32, 369
MaeII ACGT 2 cut(s) 114, 248
MalI GATC 3 cut(s) 75, 258, 267
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 73, 256, 265
MboII GAAGA 2 cut(s) 235, 239
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 243, 292
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 46, 49, 57, 186, 211, 214
MseI TTAA 2 cut(s) 198, 365
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 260, 314, 347
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 238, 317
NcoI CCATGG 1 cut(s) 293
NdeII GATC 3 cut(s) 73, 256, 265
NlaIII CATG 2 cut(s) 297, 346
NlaIV GGNNCC 2 cut(s) 258, 360
NspV TTCGAA 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 202
PciSI GCTCTTC 2 cut(s) 222, 248
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 2 cut(s) 25, 234
PshBI ATTAAT 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 258, 360
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 347
SapI GCTCTTC 2 cut(s) 222, 248
SaqAI TTAA 2 cut(s) 198, 365
SatI GCNGC 2 cut(s) 24, 233
Sau3AI GATC 3 cut(s) 73, 256, 265
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 243, 292
SetI ASST 8 cut(s) 100, 117, 135, 159, 216, 251, 360, 374
SfaNI GCATC 1 cut(s) 4
SfuI TTCGAA 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 347
SsiI CCGC 3 cut(s) 141, 181, 235
SspMI CTAG 3 cut(s) 27, 32, 369
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 293
TaiI ACGT 2 cut(s) 117, 251
TaqI TCGA 2 cut(s) 268, 274
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 198, 365
Tru9I TTAA 2 cut(s) 198, 365
TseI GCWGC 2 cut(s) 23, 232
VspI ATTAAT 1 cut(s) 198
XspI CTAG 3 cut(s) 27, 32, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.