Rmu_sc0010496.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010496.1
OG0000187
Physical Location & Seq
Reverse (-)
12309 .. 12659
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010496.1_g000004.1.cds

Sequence Viewer

Length: 351 bp
atgtcttctgttgatgcaatggctgctagactagcctcctctcttgctatcgctgaaggcaagaggcagattgatttgcgacctaagcagggtaagggtttgcgacaggcaaacgtattcttggtgggcaagctcctcaccgctcgggatttcaaggtccagtccttcatggggatgtttcgcaacgcctggagggttaatggttcgctgcaggtggaggaagcagaaggacaaagagtgctattcacactgtcggatccgtctgatcgagttcgaatatggcggggtgccccatggggatataaccacgcgccggtggctctagctttgtatgatggtatcatgccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

10.33

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 1 cut(s) 311
AciI CCGC 2 cut(s) 141, 283
AclWI GGATC 2 cut(s) 251, 264
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 89, 171, 313
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 2 cut(s) 133, 326
AluI AGCT 2 cut(s) 133, 326
AlwI GGATC 2 cut(s) 251, 264
Ama87I CYCGRG 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 23, 208
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 10, 195
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 190
BfaI CTAG 4 cut(s) 27, 32, 323, 349
BfmI CTRYAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 24, 209
BlsI GCNGC 2 cut(s) 25, 210
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 258, 289
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 171, 313
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 89, 171, 313
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 28, 125
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 10, 195
Bsh1236I CGCG 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 89, 171, 313
BsoBI CYCGRG 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 256, 265
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 2 cut(s) 141, 283
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 258, 289
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 2 cut(s) 251, 264
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 256, 265
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 259, 268
BstMBI GATC 2 cut(s) 256, 265
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 209
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 10, 195
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 3 cut(s) 169, 294, 343
CviJI RGCY 5 cut(s) 23, 35, 133, 320, 326
CviKI_1 RGCY 5 cut(s) 23, 35, 133, 320, 326
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 258, 267
DpnII GATC 2 cut(s) 256, 265
Eco130I CCWWGG 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 172, 297, 346
FaiI YATR 6 cut(s) 170, 280, 295, 303, 333, 344
FatI CATG 3 cut(s) 168, 293, 342
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 24, 209
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 24, 209
FspBI CTAG 4 cut(s) 27, 32, 323, 349
GlaI GCGC 1 cut(s) 312
GluI GCNGC 2 cut(s) 24, 209
GsuI CTGGAG 1 cut(s) 211
HapII CCGG 1 cut(s) 314
HhaI GCGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 172, 297, 346
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 256, 265
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 50, 175, 221
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 17, 211
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 172, 297, 346
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 256, 265
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 7 cut(s) 74, 92, 173, 175, 197, 202, 327
Lsp1109I GCAGC 2 cut(s) 10, 195
LweI GCATC 1 cut(s) 4
MaeI CTAG 4 cut(s) 27, 32, 323, 349
MaeII ACGT 1 cut(s) 114
MalI GATC 2 cut(s) 258, 267
MbiI CCGCTC 1 cut(s) 143
MboI GATC 2 cut(s) 256, 265
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 46, 49, 57, 146, 186, 211
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 85, 317
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 256, 265
NlaIII CATG 3 cut(s) 172, 297, 346
NlaIV GGNNCC 2 cut(s) 258, 289
NspV TTCGAA 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 25, 210
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 258, 289
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 24, 209
Sau3AI GATC 2 cut(s) 256, 265
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 292
SetI ASST 6 cut(s) 85, 117, 135, 159, 216, 328
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 274
SgrAI CRCCGGYG 1 cut(s) 313
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 173
SsiI CCGC 2 cut(s) 141, 283
SspMI CTAG 4 cut(s) 27, 32, 323, 349
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 268, 274
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 23, 208
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 157
XspI CTAG 4 cut(s) 27, 32, 323, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.