Rmu_sc0004741.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004741.1
OG0000187
Physical Location & Seq
Reverse (-)
1035 .. 1628
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004741.1_g000001.1.cds

Sequence Viewer

Length: 594 bp
atgactatgattggttacaccctaggggactttcaggagatcaacaagattggaaagaaagccggaaaaattcacatccgggtagagatcccgctgaacaagccgctgcctttcaaactatggtactgggtggaggacgaggtcgagttcttgtgtaagtttaaatatgacaagttgtttggtcgctgctctacctgtggtttggtgactcatgtcggcctcccttgttcggggtcggcgttggaggaagatgaggatggggcagagaggactgttttgggggcacaccatgcagctgcaacaccggtgccgtctggcggtttgcaactgcacacgggggcttccagttctgggtcgtctgctgcaggtaattcggggttgcaagctagggttttgactcgtggtcaaactctagttttcaagactcctattccaagttcaacttcggagccagctgtgtgttccttcttgaatagacctcgccgtcaagtggtgattagagagttgcatgaaatgctatgccaccggaaaggcttacggggaagcgtagaggtcgctctgatgctggagagactatatctccaaagaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04934 ko05202 map00310 map04934 map05202
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4

Protein Analysis

197

Amino Acids

21.65

Weight (kDa)

9.08

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 3 cut(s) 92, 104, 318
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 5 cut(s) 229, 230, 317, 351, 490
AgeI ACCGGT 1 cut(s) 304
AgsI TTSAA 4 cut(s) 115, 421, 441, 472
AhdI GACNNNNNGTC 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 3 cut(s) 296, 386, 455
AluI AGCT 3 cut(s) 296, 386, 455
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 5 cut(s) 106, 186, 293, 296, 362
ApoI RAATTY 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AsiGI ACCGGT 1 cut(s) 304
AspA2I CCTAGG 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 217, 505
AvrII CCTAGG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 307
BauI CACGAG 1 cut(s) 399
BbvI GCAGC 5 cut(s) 93, 173, 283, 305, 349
BccI CCATC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 295, 468
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 3 cut(s) 23, 387, 413
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 6 cut(s) 104, 107, 187, 294, 297, 363
BlnI CCTAGG 1 cut(s) 22
BlsI GCNGC 6 cut(s) 105, 108, 188, 295, 298, 364
Bme1390I CCNGG 1 cut(s) 80
BmeRI GACNNNNNGTC 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 309, 450
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 304, 525
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 230, 317, 351, 490
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 131, 345
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 75, 262
BseLI CCNNNNNNNGG 5 cut(s) 229, 230, 317, 351, 490
BseNI ACTGG 2 cut(s) 131, 345
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 5 cut(s) 93, 173, 283, 305, 349
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 307
BshTI ACCGGT 1 cut(s) 304
BsiSI CCGG 4 cut(s) 63, 79, 305, 526
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 5 cut(s) 229, 230, 317, 351, 490
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 39, 87
BspACI CCGC 3 cut(s) 92, 104, 318
BspANI GGCC 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 309, 450
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 2 cut(s) 131, 345
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 39, 87
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 274
BstAPI GCANNNNNTGC 2 cut(s) 290, 514
BstC8I GCNNGC 2 cut(s) 384, 453
BstF5I GGATG 2 cut(s) 75, 262
BstKTI GATC 2 cut(s) 42, 90
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 2 cut(s) 39, 87
BstMWI GCNNNNNNNGC 3 cut(s) 100, 290, 514
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 5 cut(s) 93, 173, 283, 305, 349
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 75, 262
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 384, 453
Cfr10I RCCGGY 1 cut(s) 304
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 304
CviAII CATG 3 cut(s) 212, 290, 509
CviJI RGCY 9 cut(s) 62, 103, 219, 296, 341, 386, 451, 455, 534
CviKI_1 RGCY 9 cut(s) 62, 103, 219, 296, 341, 386, 451, 455, 534
CviQI GTAC 1 cut(s) 124
DpnI GATC 2 cut(s) 41, 89
DpnII GATC 2 cut(s) 39, 87
DraI TTTAAA 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 483
DriI GACNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 483
Eam1105I GACNNNNNGTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 215, 293, 512
FaiI YATR 8 cut(s) 8, 121, 168, 213, 291, 510, 520, 577
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 1 cut(s) 41
FatI CATG 3 cut(s) 211, 289, 508
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 6 cut(s) 104, 107, 187, 294, 297, 363
FokI GGATG 2 cut(s) 62, 269
Fsp4HI GCNGC 6 cut(s) 104, 107, 187, 294, 297, 363
FspBI CTAG 3 cut(s) 23, 387, 413
GluI GCNGC 6 cut(s) 104, 107, 187, 294, 297, 363
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 1 cut(s) 219
HapII CCGG 4 cut(s) 63, 79, 305, 526
Hin1II CATG 3 cut(s) 215, 293, 512
HinfI GANTC 3 cut(s) 208, 397, 424
HpaII CCGG 4 cut(s) 63, 79, 305, 526
HphI GGTGA 2 cut(s) 217, 505
Hpy188I TCNGA 2 cut(s) 448, 561
Hpy188III TCNNGA 3 cut(s) 35, 421, 469
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 7 cut(s) 293, 299, 325, 331, 365, 382, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 290, 514
Hsp92II CATG 3 cut(s) 215, 293, 512
Kzo9I GATC 2 cut(s) 39, 87
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 5 cut(s) 93, 173, 283, 305, 349
LweI GCATC 1 cut(s) 552
MaeI CTAG 3 cut(s) 23, 387, 413
MaeIII GTNAC 2 cut(s) 14, 205
MalI GATC 2 cut(s) 41, 89
MboI GATC 2 cut(s) 39, 87
MboII GAAGA 1 cut(s) 260
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 69, 370
MlyI GAGTC 3 cut(s) 202, 391, 418
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 8 cut(s) 127, 133, 230, 238, 247, 261, 489, 544
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 4 cut(s) 94, 106, 296, 455
MspI CCGG 4 cut(s) 63, 79, 305, 526
MspR9I CCNGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 100, 290, 514
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 39, 87
NlaIII CATG 3 cut(s) 215, 293, 512
NlaIV GGNNCC 2 cut(s) 309, 450
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 304
PkrI GCNGC 6 cut(s) 105, 108, 188, 295, 298, 364
PleI GAGTC 3 cut(s) 202, 391, 418
PpsI GAGTC 3 cut(s) 202, 391, 418
PshAI GACNNNNGTC 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 309, 450
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 2 cut(s) 296, 455
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 6 cut(s) 104, 107, 187, 294, 297, 363
Sau3AI GATC 2 cut(s) 39, 87
SchI GAGTC 3 cut(s) 202, 391, 418
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 286
SetI ASST 8 cut(s) 144, 197, 298, 370, 388, 457, 481, 555
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 363
SgrAI CRCCGGYG 1 cut(s) 304
Sse9I AATT 2 cut(s) 69, 370
SsiI CCGC 3 cut(s) 92, 104, 318
SspMI CTAG 3 cut(s) 23, 387, 413
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 69, 370
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 5 cut(s) 106, 186, 293, 296, 362
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 525
Tth111I GACNNNGTC 1 cut(s) 140
XapI RAATTY 1 cut(s) 69
XmaJI CCTAGG 1 cut(s) 22
XspI CTAG 3 cut(s) 23, 387, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.