Rmu_sc0005415.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005415.1
OG0000187
Physical Location & Seq
Reverse (-)
1427 .. 2161
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005415.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
atggttggaaaactcctcactactagggagttcaaggtccgttccttcctaggtatgtttcgatctgcctggagggtcaatgggacgctgaaagttgaagacgctgaaggaggtagggttttgttcactttttcagatcctacagaccgagctagggtttggaggggcgcatcatggggttttaaccgtgctcctgtggctttggctgagtatgatgtggttatgccaattgagaaggtgccattggtgaaatcctcctattggatcacgctgcagggtattccacctgcgtttagatctgaaagggtgatgacgatgatcggatatacgttgggggactttcaggagattgataagcaggggaagaaggttggcaagtaccggattcgggttgagattcctctgataaggccattgtcctttcaacgttggtattgggtggaggacacagtggagtttctatgcaaattcaggtatgataagttgtttgggaggtgtggagtgtgtgggttgatcacccatgttggactgtcgtgctcggggccaccgttgaacgaagaagatgatgctgcagagcgcacggtattagagccgccgccggttgtgcagggtaatgccatgcaggtcgggatcagcggcttgactacggggtcgggttctgaaggttgcagccatgaagctgcattcaatcctaaggtttctttcgatgggcacagtttgatcttcaagacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

244

Amino Acids

27.32

Weight (kDa)

8.79

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
AasI GACNNNNNNGTC 1 cut(s) 649
Acc36I ACCTGC 2 cut(s) 295, 613
AccB1I GGYRCC 1 cut(s) 238
AciI CCGC 3 cut(s) 593, 596, 636
AclI AACGTT 1 cut(s) 427
AclWI GGATC 3 cut(s) 131, 272, 638
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 126, 681
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 154, 261, 388
AgsI TTSAA 6 cut(s) 34, 98, 425, 553, 688, 727
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 152, 680
AluI AGCT 2 cut(s) 152, 680
Alw21I GWGCWC 2 cut(s) 193, 539
AlwI GGATC 3 cut(s) 131, 272, 638
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 2 cut(s) 410, 542
ApeKI GCWGC 4 cut(s) 271, 569, 669, 680
ApoI RAATTY 1 cut(s) 467
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 2 cut(s) 170, 579
AspS9I GGNCC 2 cut(s) 37, 542
AsuHPI GGTGA 3 cut(s) 259, 319, 508
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 1 cut(s) 37
AvrII CCTAGG 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 693
BaeGI GKGCMC 1 cut(s) 714
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 193, 539
BbvI GCAGC 4 cut(s) 258, 556, 667, 681
BccI CCATC 1 cut(s) 701
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 513
BfaI CTAG 3 cut(s) 24, 50, 153
BfmI CTRYAG 3 cut(s) 141, 272, 570
BfuAI ACCTGC 2 cut(s) 295, 613
BglII AGATCT 1 cut(s) 296
BisI GCNGC 7 cut(s) 272, 570, 593, 596, 637, 670, 681
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 7 cut(s) 273, 571, 594, 597, 638, 671, 682
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 37, 542
BmiI GGNNCC 2 cut(s) 240, 543
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 179, 556
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 261, 388
Bse118I RCCGGY 1 cut(s) 598
Bse21I CCTNAGG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 3 cut(s) 154, 261, 388
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 5
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 4 cut(s) 258, 556, 667, 681
BsgI GTGCAG 1 cut(s) 626
BshFI GGCC 2 cut(s) 412, 544
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 193, 539
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 2 cut(s) 382, 599
BslFI GGGAC 2 cut(s) 97, 350
BslI CCNNNNNNNGG 3 cut(s) 154, 261, 388
BsmFI GGGAC 2 cut(s) 97, 350
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 2 cut(s) 412, 544
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 3 cut(s) 193, 539, 714
Bsp143I GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
BspACI CCGC 3 cut(s) 593, 596, 636
BspANI GGCC 2 cut(s) 412, 544
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 240, 543
BspMAI CTGCAG 2 cut(s) 276, 574
BspMI ACCTGC 2 cut(s) 295, 613
BspPI GGATC 3 cut(s) 131, 272, 638
BspT107I GGYRCC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 6 cut(s) 188, 451, 531, 549, 583, 716
BstDEI CTNAG 2 cut(s) 207, 693
BstHHI GCGC 2 cut(s) 170, 579
BstKTI GATC 8 cut(s) 65, 139, 267, 299, 321, 516, 633, 723
BstMBI GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
BstMWI GCNNNNNNNGC 2 cut(s) 197, 604
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 3 cut(s) 141, 272, 570
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 4 cut(s) 258, 556, 667, 681
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 136, 296
BstYI RGATCY 2 cut(s) 136, 296
Bsu36I CCTNAGG 1 cut(s) 693
BsuRI GGCC 2 cut(s) 412, 544
BtsIMutI CAGTG 1 cut(s) 456
BveI ACCTGC 2 cut(s) 295, 613
CfoI GCGC 2 cut(s) 170, 579
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 37, 542
CseI GACGC 2 cut(s) 94, 110
Csp6I GTAC 1 cut(s) 379
CviAII CATG 4 cut(s) 174, 521, 619, 674
CviJI RGCY 9 cut(s) 152, 200, 206, 412, 544, 592, 639, 672, 680
CviKI_1 RGCY 9 cut(s) 152, 200, 206, 412, 544, 592, 639, 672, 680
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 2 cut(s) 207, 693
DpnI GATC 8 cut(s) 64, 138, 266, 298, 320, 515, 632, 722
DpnII GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 126, 681
Eco81I CCTNAGG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 4 cut(s) 177, 524, 622, 677
FaqI GGGAC 2 cut(s) 97, 350
FatI CATG 4 cut(s) 173, 520, 618, 673
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 7 cut(s) 272, 570, 593, 596, 637, 670, 681
Fsp4HI GCNGC 7 cut(s) 272, 570, 593, 596, 637, 670, 681
FspBI CTAG 3 cut(s) 24, 50, 153
GlaI GCGC 2 cut(s) 169, 578
GluI GCNGC 7 cut(s) 272, 570, 593, 596, 637, 670, 681
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 412, 544
HapII CCGG 2 cut(s) 382, 599
HgaI GACGC 2 cut(s) 94, 110
HhaI GCGC 2 cut(s) 170, 579
Hin1II CATG 4 cut(s) 177, 524, 622, 677
Hin6I GCGC 2 cut(s) 168, 577
HinP1I GCGC 2 cut(s) 168, 577
HinfI GANTC 2 cut(s) 385, 397
HpaII CCGG 2 cut(s) 382, 599
HphI GGTGA 3 cut(s) 259, 319, 508
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 5 cut(s) 136, 301, 323, 405, 661
Hpy188III TCNNGA 3 cut(s) 344, 628, 727
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 5 cut(s) 55, 101, 229, 361, 656
HpyCH4III ACNGT 6 cut(s) 188, 451, 531, 549, 583, 716
HpyCH4IV ACGT 2 cut(s) 329, 427
HpyCH4V TGCA 7 cut(s) 274, 465, 572, 607, 622, 669, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 604
HpyF3I CTNAG 2 cut(s) 207, 693
HpySE526I ACGT 2 cut(s) 329, 427
Hsp92II CATG 4 cut(s) 177, 524, 622, 677
HspAI GCGC 2 cut(s) 168, 577
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 4 cut(s) 258, 556, 667, 681
LweI GCATC 2 cut(s) 179, 556
MaeI CTAG 3 cut(s) 24, 50, 153
MaeII ACGT 2 cut(s) 329, 427
MalI GATC 8 cut(s) 64, 138, 266, 298, 320, 515, 632, 722
MboI GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
MboII GAAGA 5 cut(s) 110, 376, 569, 572, 715
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 136, 296
MhlI GDGCHC 3 cut(s) 193, 539, 714
MluCI AATT 2 cut(s) 228, 467
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 8 cut(s) 26, 66, 104, 156, 265, 411, 436, 486
MseI TTAA 2 cut(s) 183, 733
MspA1I CMGCKG 1 cut(s) 636
MspI CCGG 2 cut(s) 382, 599
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 197, 604
NdeII GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
NlaIII CATG 4 cut(s) 177, 524, 622, 677
NlaIV GGNNCC 2 cut(s) 240, 543
PaqCI CACCTGC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 2 cut(s) 385, 397
PkrI GCNGC 7 cut(s) 273, 571, 594, 597, 638, 671, 682
Psp1406I AACGTT 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 240, 543
PspPI GGNCC 2 cut(s) 37, 542
PstI CTGCAG 2 cut(s) 276, 574
PsuI RGATCY 2 cut(s) 136, 296
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 183, 733
SatI GCNGC 7 cut(s) 272, 570, 593, 596, 637, 670, 681
Sau3AI GATC 8 cut(s) 62, 136, 264, 296, 318, 513, 630, 720
Sau96I GGNCC 2 cut(s) 37, 542
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 3 cut(s) 193, 539, 714
SfaNI GCATC 2 cut(s) 179, 556
SfcI CTRYAG 3 cut(s) 141, 272, 570
SinI GGWCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 228, 467
SsiI CCGC 3 cut(s) 593, 596, 636
SspMI CTAG 3 cut(s) 24, 50, 153
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 6 cut(s) 188, 451, 531, 549, 583, 716
TaiI ACGT 2 cut(s) 332, 430
TaqI TCGA 2 cut(s) 61, 705
TaqII GACCGA 1 cut(s) 162
TasI AATT 2 cut(s) 228, 467
TauI GCSGC 3 cut(s) 595, 598, 639
TfiI GAWTC 2 cut(s) 385, 397
Tru1I TTAA 2 cut(s) 183, 733
Tru9I TTAA 2 cut(s) 183, 733
TscAI CASTG 1 cut(s) 456
TseI GCWGC 4 cut(s) 271, 569, 669, 680
TspDTI ATGAA 1 cut(s) 690
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 467
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 3 cut(s) 24, 50, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.