Rmu_sc0021262.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021262.1
OG0000187
Physical Location & Seq
Forward (+)
9223 .. 9483
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021262.1_g000003.1.cds

Sequence Viewer

Length: 261 bp
atgactatgattggtttcaagacggggaagaaggtcggaaagcttcgcattagggtggaaatcccgctgaacaagccgctaccctttaaacgatggtattgggtggaagacgaggttgaattcctctgcaaattcaagtatgacaaactgtttggccgatgctccatctgtggtttggtgacacatgtaggcttgccatgctcgggaccggcattggaggaggatgatgacgaggctgaaaggacggtgttgggatcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

86

Amino Acids

9.84

Weight (kDa)

7.64

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 77
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 119, 131
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 3 cut(s) 19, 119, 136
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 2 cut(s) 119, 131
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 2 cut(s) 87, 173
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 208
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 2 cut(s) 65, 77
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 150, 247
BstC8I GCNNGC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 73, 198
BstNSI RCATGY 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 2 cut(s) 185, 198
CviJI RGCY 5 cut(s) 43, 76, 156, 192, 236
CviKI_1 RGCY 5 cut(s) 43, 76, 156, 192, 236
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DraI TTTAAA 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 119
FaeI CATG 2 cut(s) 188, 201
FaiI YATR 4 cut(s) 8, 141, 186, 199
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 184, 197
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 209
Hin1II CATG 2 cut(s) 188, 201
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 19, 204
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 150, 247
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 198
Hsp92II CATG 2 cut(s) 188, 201
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 222
LweI GCATC 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 40, 119
MluCI AATT 2 cut(s) 119, 131
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 5 cut(s) 106, 134, 211, 214, 226
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 73, 198
NdeII GATC 1 cut(s) 254
NlaIII CATG 2 cut(s) 188, 201
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 188
PciI ACATGT 1 cut(s) 184
PkrI GCNGC 1 cut(s) 78
PscI ACATGT 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 206
SetI ASST 3 cut(s) 36, 45, 117
SfaNI GCATC 1 cut(s) 149
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 2 cut(s) 119, 131
SsiI CCGC 2 cut(s) 65, 77
TaaI ACNGT 2 cut(s) 150, 247
TasI AATT 2 cut(s) 119, 131
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 2 cut(s) 119, 131
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.