Rmu_sc0012293.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012293.1
OG0000187
Physical Location & Seq
Reverse (-)
15214 .. 15597
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012293.1_g000004.1.cds

Sequence Viewer

Length: 384 bp
atgggttccgttgatgccatggctgctaggctcgcatcctcgcttgctatcgctgagggtaagaaacaagtggatcttcggcctacacaaggccaagggctgcgaaaatctgaggtttttatggtgggcaagttactcactgctcgggatttcaaaatccaatcctttctagggatattccgcaatgcttggcggactaatggatcactgcagatggaggaggcggagggacagagggttttgttcacactgtcagatccttcagatcgggttcgcatctggaagggagctccatgggggtacaatcatgcacccgtggcgttggcatgctatgatggagtcgttcctgtggagaaagtccctctaaccatggcttcatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

9.46

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 181, 193, 224
AclWI GGATC 3 cut(s) 81, 211, 251
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 89, 171
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 292
AlwI GGATC 3 cut(s) 81, 211, 251
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 2 cut(s) 80, 91
ApeKI GCWGC 2 cut(s) 23, 100
AvaI CYCGRG 1 cut(s) 144
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 10, 87
BccI CCATC 2 cut(s) 208, 329
BfaI CTAG 3 cut(s) 27, 170, 382
BfmI CTRYAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 24, 101
BlsI GCNGC 2 cut(s) 25, 102
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 3 cut(s) 4, 44, 285
Bpu10I CCTNAGC 1 cut(s) 54
BsaJI CCNNGG 5 cut(s) 18, 94, 293, 315, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 171
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 5 cut(s) 18, 94, 293, 315, 369
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 89, 171
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 45, 102
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 10, 87
BshFI GGCC 2 cut(s) 82, 93
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 144
BslFI GGGAC 2 cut(s) 243, 344
BslI CCNNNNNNNGG 2 cut(s) 89, 171
BsmFI GGGAC 2 cut(s) 243, 344
BsnI GGCC 2 cut(s) 82, 93
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 4 cut(s) 73, 203, 256, 265
Bsp19I CCATGG 3 cut(s) 18, 293, 369
BspACI CCGC 3 cut(s) 181, 193, 224
BspANI GGCC 2 cut(s) 82, 93
BspCNI CTCAG 2 cut(s) 46, 103
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 213
BspPI GGATC 3 cut(s) 81, 211, 251
BsrDI GCAATG 1 cut(s) 190
BssECI CCNNGG 5 cut(s) 18, 94, 293, 315, 369
BssMI GATC 4 cut(s) 73, 203, 256, 265
BssT1I CCWWGG 4 cut(s) 18, 94, 293, 369
Bst4CI ACNGT 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 33, 45, 328
BstDEI CTNAG 2 cut(s) 54, 111
BstDSI CCRYGG 4 cut(s) 18, 293, 315, 369
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 4 cut(s) 76, 206, 259, 268
BstMBI GATC 4 cut(s) 73, 203, 256, 265
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 317
BstNSI RCATGY 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 10, 87
BstX2I RGATCY 2 cut(s) 73, 256
BstYI RGATCY 2 cut(s) 73, 256
BsuRI GGCC 2 cut(s) 82, 93
BtgI CCRYGG 4 cut(s) 18, 293, 315, 369
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 2 cut(s) 138, 206
BtsIMutI CAGTG 3 cut(s) 138, 206, 248
Cac8I GCNNGC 3 cut(s) 33, 45, 328
Csp6I GTAC 1 cut(s) 301
CviAII CATG 5 cut(s) 19, 294, 308, 327, 370
CviJI RGCY 7 cut(s) 23, 31, 82, 93, 100, 290, 374
CviKI_1 RGCY 7 cut(s) 23, 31, 82, 93, 100, 290, 374
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 54, 111
DpnI GATC 4 cut(s) 75, 205, 258, 267
DpnII GATC 4 cut(s) 73, 203, 256, 265
EciI GGCGGA 2 cut(s) 208, 239
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 4 cut(s) 18, 94, 293, 369
Eco24I GRGCYC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoT14I CCWWGG 4 cut(s) 18, 94, 293, 369
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 4 cut(s) 18, 94, 293, 369
FaeI CATG 5 cut(s) 22, 297, 311, 330, 373
FaiI YATR 8 cut(s) 20, 122, 295, 309, 328, 333, 371, 379
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 2 cut(s) 243, 344
FatI CATG 5 cut(s) 18, 293, 307, 326, 369
Fnu4HI GCNGC 2 cut(s) 24, 101
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 24, 101
FspBI CTAG 3 cut(s) 27, 170, 382
GluI GCNGC 2 cut(s) 24, 101
HaeIII GGCC 2 cut(s) 82, 93
Hin1II CATG 5 cut(s) 22, 297, 311, 330, 373
HinfI GANTC 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 3 cut(s) 112, 256, 265
Hpy188III TCNNGA 2 cut(s) 146, 280
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 270, 277
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 211, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 317
HpyF3I CTNAG 2 cut(s) 54, 111
Hsp92II CATG 5 cut(s) 22, 297, 311, 330, 373
Kzo9I GATC 4 cut(s) 73, 203, 256, 265
LmnI GCTCC 2 cut(s) 287, 295
LpnPI CCDG 2 cut(s) 265, 360
Lsp1109I GCAGC 2 cut(s) 10, 87
LweI GCATC 3 cut(s) 4, 44, 285
MaeI CTAG 3 cut(s) 27, 170, 382
MaeIII GTNAC 1 cut(s) 132
MalI GATC 4 cut(s) 75, 205, 258, 267
MboI GATC 4 cut(s) 73, 203, 256, 265
MboII GAAGA 1 cut(s) 68
MflI RGATCY 2 cut(s) 73, 256
MhlI GDGCHC 1 cut(s) 292
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 8 cut(s) 49, 49, 106, 211, 214, 220, 228, 372
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 317
NcoI CCATGG 3 cut(s) 18, 293, 369
NdeII GATC 4 cut(s) 73, 203, 256, 265
NlaIII CATG 5 cut(s) 22, 297, 311, 330, 373
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 25, 102
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 73, 256
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 292
SatI GCNGC 2 cut(s) 24, 101
Sau3AI GATC 4 cut(s) 73, 203, 256, 265
SchI GAGTC 1 cut(s) 348
SduI GDGCHC 1 cut(s) 292
SetI ASST 2 cut(s) 117, 292
SfaNI GCATC 3 cut(s) 4, 44, 285
SfcI CTRYAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 330
SsiI CCGC 3 cut(s) 181, 193, 224
SspMI CTAG 3 cut(s) 27, 170, 382
SstI GAGCTC 1 cut(s) 292
StyI CCWWGG 4 cut(s) 18, 94, 293, 369
TaaI ACNGT 1 cut(s) 252
TscAI CASTG 3 cut(s) 145, 213, 255
TseI GCWGC 2 cut(s) 23, 100
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 3 cut(s) 145, 213, 255
XagI CCTNNNNNAGG 1 cut(s) 87
XceI RCATGY 1 cut(s) 330
XspI CTAG 3 cut(s) 27, 170, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.