Rmu_sc0006536.1_g000004

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006536.1
OG0000187
Physical Location & Seq
Reverse (-)
8541 .. 9781
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006536.1_g000004.1.cds

Sequence Viewer

Length: 822 bp
atgaattctgttgatgccatggccgcgcgtctcacctcctctcttgcaatagttgaggtgaagagacaagtggatctttgtcggtcacaaggcaagggcttgaggcaatcagatgtttttatggttaggaaacttctgacagctagggagtttaaggtgcgatcgttttttgggatgtttcgttctgcttggagggtgaatgacacgttgcaggtggaggaggtagagggccaacgtgtgctctttaccttctcagattcgggggaccgtcttagggtttggaaaggggcgccatggggtttttacagagcctctgtgacattggctgaatatgatggagtggttccggtggaaacagtgcagttggtgaaggcatcgtactggatcatgctacaaaacatacctcctacattccggttagagagaatcatgatgatgattgggtttacccttggtgacttccaagagattgataagcaagggctgcaagtcaagaaaatggggaaatgtcggatctgggttgagatcgctttttctcgacctctgccatttcagagatggttttgggtggaggacatggtggagcttctttgcaaattccgctacgataaactgtttggtcgcagtgggcgcaagaaaactcttgcagtccttctaagctcctcctctacactacacttgttactcgacaaccggacagcctccacaacagttttcgagactggaacattcagcgcttatgataaagaaaatagcgacatgttagccaacgcaatcgtcggtggctgtgcactcaactcctccctccctctccctcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

273

Amino Acids

31.17

Weight (kDa)

9.51

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 289
AccII CGCG 2 cut(s) 26, 28
AciI CCGC 2 cut(s) 24, 601
AclWI GGATC 3 cut(s) 81, 392, 521
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 2 cut(s) 4, 596
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 380
AfeI AGCGCT 1 cut(s) 736
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 3 cut(s) 204, 235, 759
AloI GAACNNNNNNTCC 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 143, 586, 660
AluI AGCT 3 cut(s) 143, 586, 660
Alw21I GWGCWC 2 cut(s) 243, 793
Alw26I GTCTC 3 cut(s) 35, 58, 713
Alw44I GTGCAC 1 cut(s) 789
AlwI GGATC 3 cut(s) 81, 392, 521
Aor51HI AGCGCT 1 cut(s) 736
AoxI GGCC 2 cut(s) 21, 229
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 4, 596
AspLEI GCGC 4 cut(s) 28, 292, 633, 737
AspS9I GGNCC 2 cut(s) 229, 265
AsuHPI GGTGA 5 cut(s) 25, 70, 208, 379, 467
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 793
BanI GGYRCC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
Bbv12I GWGCWC 2 cut(s) 243, 793
BbvI GCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 329, 552
BcoDI GTCTC 3 cut(s) 35, 58, 713
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 2 cut(s) 293, 738
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 24, 485
BlsI GCNGC 2 cut(s) 25, 486
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 229, 265
BmiI GGNNCC 3 cut(s) 266, 291, 345
BmsI GCATC 2 cut(s) 4, 383
BpuEI CTTGAG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 18, 293, 451
BsaWI WCCGGW 3 cut(s) 346, 414, 693
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 386, 727
BseDI CCNNGG 3 cut(s) 18, 293, 451
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 386, 727
BseRI GAGGAG 5 cut(s) 28, 233, 652, 655, 790
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 26, 28
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 23, 231
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 243, 793
BsiSI CCGG 3 cut(s) 347, 415, 694
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 3 cut(s) 35, 58, 713
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 23, 231
Bsp1286I GDGCHC 2 cut(s) 243, 793
Bsp143I GATC 5 cut(s) 73, 161, 384, 513, 525
Bsp19I CCATGG 2 cut(s) 18, 293
BspACI CCGC 2 cut(s) 24, 601
BspANI GGCC 2 cut(s) 23, 231
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 2 cut(s) 26, 28
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 266, 291, 345
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 3 cut(s) 81, 392, 521
BspT107I GGYRCC 1 cut(s) 289
BsrI ACTGG 2 cut(s) 386, 727
BssECI CCNNGG 3 cut(s) 18, 293, 451
BssMI GATC 5 cut(s) 73, 161, 384, 513, 525
BssNI GRCGYC 1 cut(s) 290
BssT1I CCWWGG 3 cut(s) 18, 293, 451
Bst4CI ACNGT 4 cut(s) 269, 358, 615, 712
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 484
BstDEI CTNAG 4 cut(s) 253, 272, 656, 816
BstDSI CCRYGG 2 cut(s) 18, 293
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 26, 28
BstH2I RGCGCY 2 cut(s) 293, 738
BstHHI GCGC 4 cut(s) 28, 292, 633, 737
BstKTI GATC 5 cut(s) 76, 164, 387, 516, 528
BstMAI GTCTC 3 cut(s) 35, 58, 713
BstMBI GATC 5 cut(s) 73, 161, 384, 513, 525
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 4 cut(s) 23, 484, 600, 630
BstNSI RCATGY 1 cut(s) 763
BstSLI GKGCMC 1 cut(s) 793
BstUI CGCG 2 cut(s) 26, 28
BstV1I GCAGC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 73, 513
BstYI RGATCY 2 cut(s) 73, 513
BsuRI GGCC 2 cut(s) 23, 231
BtgI CCRYGG 2 cut(s) 18, 293
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 2 cut(s) 363, 631
BveI ACCTGC 1 cut(s) 202
CciI TCATGA 1 cut(s) 429
CfoI GCGC 4 cut(s) 28, 292, 633, 737
Cfr13I GGNCC 2 cut(s) 229, 265
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 379
CviAII CATG 6 cut(s) 19, 294, 388, 430, 577, 760
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 253, 272, 656, 816
DinI GGCGCC 1 cut(s) 291
DpnI GATC 5 cut(s) 75, 163, 386, 515, 527
DpnII GATC 5 cut(s) 73, 161, 384, 513, 525
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 3 cut(s) 18, 293, 451
Eco47I GGWCC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 3 cut(s) 18, 293, 451
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
ErhI CCWWGG 3 cut(s) 18, 293, 451
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 6 cut(s) 22, 297, 391, 433, 580, 763
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 278
FatI CATG 6 cut(s) 18, 293, 387, 429, 576, 759
Fnu4HI GCNGC 2 cut(s) 24, 485
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 24, 485
FspBI CTAG 1 cut(s) 144
GlaI GCGC 4 cut(s) 27, 291, 632, 736
GluI GCNGC 2 cut(s) 24, 485
HaeII RGCGCY 2 cut(s) 293, 738
HaeIII GGCC 2 cut(s) 23, 231
HapII CCGG 3 cut(s) 347, 415, 694
HgaI GACGC 1 cut(s) 17
HhaI GCGC 4 cut(s) 28, 292, 633, 737
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 6 cut(s) 22, 297, 391, 433, 580, 763
Hin6I GCGC 4 cut(s) 26, 290, 631, 735
HinP1I GCGC 4 cut(s) 26, 290, 631, 735
HinfI GANTC 2 cut(s) 257, 426
HpaII CCGG 3 cut(s) 347, 415, 694
HphI GGTGA 5 cut(s) 25, 70, 208, 379, 467
Hpy166II GTNNAC 2 cut(s) 447, 791
Hpy188I TCNGA 5 cut(s) 112, 138, 256, 513, 555
Hpy188III TCNNGA 4 cut(s) 430, 493, 537, 718
Hpy8I GTNNAC 2 cut(s) 447, 791
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 3 cut(s) 259, 364, 662
HpyCH4III ACNGT 4 cut(s) 269, 358, 615, 712
HpyCH4IV ACGT 2 cut(s) 206, 235
HpyCH4V TGCA 7 cut(s) 47, 211, 361, 487, 594, 647, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 484, 600, 630
HpyF3I CTNAG 4 cut(s) 253, 272, 656, 816
HpySE526I ACGT 2 cut(s) 206, 235
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 6 cut(s) 22, 297, 391, 433, 580, 763
HspAI GCGC 4 cut(s) 26, 290, 631, 735
KasI GGCGCC 1 cut(s) 289
Kzo9I GATC 5 cut(s) 73, 161, 384, 513, 525
LmnI GCTCC 2 cut(s) 583, 665
LpnPI CCDG 7 cut(s) 197, 360, 367, 428, 502, 707, 708
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 2 cut(s) 4, 383
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 206, 235
MaeIII GTNAC 4 cut(s) 84, 316, 455, 681
MalI GATC 5 cut(s) 75, 163, 386, 515, 527
MboI GATC 5 cut(s) 73, 161, 384, 513, 525
MboII GAAGA 1 cut(s) 73
MflI RGATCY 2 cut(s) 73, 513
MhlI GDGCHC 2 cut(s) 243, 793
MluCI AATT 2 cut(s) 4, 596
Mly113I GGCGCC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 491
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 3 cut(s) 347, 415, 694
MvnI CGCG 2 cut(s) 26, 28
MwoI GCNNNNNNNGC 4 cut(s) 23, 484, 600, 630
NarI GGCGCC 1 cut(s) 290
NcoI CCATGG 2 cut(s) 18, 293
NdeII GATC 5 cut(s) 73, 161, 384, 513, 525
NlaIII CATG 6 cut(s) 22, 297, 391, 433, 580, 763
NlaIV GGNNCC 3 cut(s) 266, 291, 345
NmuCI GTSAC 3 cut(s) 84, 316, 455
NspI RCATGY 1 cut(s) 763
PagI TCATGA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 202
PciI ACATGT 1 cut(s) 759
PfeI GAWTC 2 cut(s) 257, 426
PkrI GCNGC 2 cut(s) 25, 486
Ple19I CGATCG 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 293
PscI ACATGT 1 cut(s) 759
PspN4I GGNNCC 3 cut(s) 266, 291, 345
PspPI GGNCC 2 cut(s) 229, 265
PsuI RGATCY 2 cut(s) 73, 513
PvuI CGATCG 1 cut(s) 164
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 24, 485
Sau3AI GATC 5 cut(s) 73, 161, 384, 513, 525
Sau96I GGNCC 2 cut(s) 229, 265
SduI GDGCHC 2 cut(s) 243, 793
SfaNI GCATC 2 cut(s) 4, 383
SfoI GGCGCC 1 cut(s) 291
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 2 cut(s) 4, 596
SsiI CCGC 2 cut(s) 24, 601
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 3 cut(s) 18, 293, 451
TaaI ACNGT 4 cut(s) 269, 358, 615, 712
TaiI ACGT 2 cut(s) 209, 238
TaqI TCGA 3 cut(s) 538, 687, 717
TaqII GACCGA 1 cut(s) 72
TasI AATT 2 cut(s) 4, 596
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 257, 426
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 363, 631
TseFI GTSAC 3 cut(s) 84, 316, 455
TseI GCWGC 1 cut(s) 484
Tsp45I GTSAC 3 cut(s) 84, 316, 455
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 363, 631
VneI GTGCAC 1 cut(s) 789
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 4, 596
XceI RCATGY 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.