Rmu_ssc0000044.1_g000012

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000044.1
OG0000187
Physical Location & Seq
Reverse (-)
29902 .. 31209
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000044.1_g000012.1.cds

Sequence Viewer

Length: 1143 bp
atgacctccgttgatgccatgactgctcggcttgcatcttctcttgcaattgcagaggggaggaagcaggttgatctgcgacctacacaagggaagggtctgcgtcaggaagacgtgtttttggtgagcaaacttctcactgctcgggaatacaaggttccctattatgatggcgttgctcccattgaatctgtctcctttgcgacgtcgtcgtattggatcacactgcagggcatccctcctacctttcgatctgagagggtgatgactatgattggattcactcttggtgatttccaggagattgataaacaggccaagaaagtaggcaatctgcgcatcagggtggaaatacctttcaacataccactgtccttcaaacgctggtattgggtggaggatgaggttgaatttctctgcaagttcaggtatgataaactctttggtagatgctcggtttgtggttttgttacccatgtaggattgctatgtttcaggcctcctttagaggaagatggtgaagccgagcgcacagtgttggttgcggcaccggcggctactctaactgcaccagagatgcagcttattgtggtcaataatttggcttctagttcggtatcaactagtagggtaaattcaagcactcaagctagggtttctatggcagttaaggaggttgattttagtgctgtgatccctaatcaaatgccggaacgtttgctccacaatctggcaatgttgttacaacgtccccgatgtcaggctaatattcgggatcttcccgagatgatgaatgtttctgagacagtaacagggaagaggagaagtagggaagaggatgttatcactatctctcccaagaaattgaaattgagcctagctgttggtaaaagaaacctaaatttggaaccggaaaatttaggattggtatttgtgctgcagtctgagaagcagcctattcagatgaagagaaagaggggtagacctacaggcagtagaaacaagctaccgtatggtgaaaagaagaaagcaaaacagggcgatgagactagggcaaccaagaaaaaactattaccaaagcttgacaaggcagatgtcgttttaggctccacctcgaaagggaaggagttggctctttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

380

Amino Acids

42.65

Weight (kDa)

9.68

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc16I TGCGCA 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 730
AccI GTMKAC 1 cut(s) 982
AciI CCGC 2 cut(s) 545, 554
AclI AACGTT 1 cut(s) 715
AclWI GGATC 3 cut(s) 227, 688, 783
AcsI RAATTY 4 cut(s) 410, 634, 901, 916
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 5 cut(s) 89, 730, 760, 904, 1119
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 6 cut(s) 188, 361, 379, 410, 639, 868
AhlI ACTAGT 1 cut(s) 623
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 5 cut(s) 583, 650, 881, 1006, 1081
AluI AGCT 5 cut(s) 583, 650, 881, 1006, 1081
Alw26I GTCTC 3 cut(s) 199, 797, 1040
AlwI GGATC 3 cut(s) 227, 688, 783
Ama87I CYCGRG 2 cut(s) 144, 782
AoxI GGCC 2 cut(s) 315, 497
ApeKI GCWGC 3 cut(s) 580, 937, 952
ApoI RAATTY 4 cut(s) 410, 634, 901, 916
AspLEI GCGC 2 cut(s) 339, 531
AsuHPI GGTGA 5 cut(s) 136, 274, 302, 530, 1028
AvaI CYCGRG 2 cut(s) 144, 782
BanI GGYRCC 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 592, 924, 964
BccI CCATC 2 cut(s) 164, 509
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 199, 797, 1040
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 6 cut(s) 609, 624, 651, 878, 1050, 1141
BfmI CTRYAG 3 cut(s) 227, 938, 987
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 546, 555, 581, 938, 953
BlsI GCNGC 5 cut(s) 547, 556, 582, 939, 954
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 2 cut(s) 144, 782
BmgBI CACGTC 1 cut(s) 115
BmiI GGNNCC 4 cut(s) 159, 549, 909, 1108
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 6 cut(s) 4, 44, 243, 348, 440, 567
BpiI GAAGAC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 910
BsaXI ACNNNNNCTCC 4 cut(s) 705, 735, 838, 868
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 730, 760, 904, 1119
Bse118I RCCGGY 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 299
BseGI GGATG 3 cut(s) 234, 406, 844
BseLI CCNNNNNNNGG 5 cut(s) 89, 730, 760, 904, 1119
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 3 cut(s) 246, 792, 936
BseRI GAGGAG 1 cut(s) 835
BseXI GCAGC 3 cut(s) 592, 924, 964
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 2 cut(s) 317, 499
BshNI GGYRCC 1 cut(s) 547
BsiHKCI CYCGRG 2 cut(s) 144, 782
BsiSI CCGG 3 cut(s) 551, 710, 911
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 5 cut(s) 89, 730, 760, 904, 1119
BsmAI GTCTC 3 cut(s) 199, 797, 1040
BsmFI GGGAC 1 cut(s) 735
BsnI GGCC 2 cut(s) 317, 499
BsoBI CYCGRG 2 cut(s) 144, 782
Bsp143I GATC 5 cut(s) 73, 219, 251, 693, 775
BspACI CCGC 2 cut(s) 545, 554
BspANI GGCC 2 cut(s) 317, 499
BspCNI CTCAG 3 cut(s) 247, 793, 937
BspLI GGNNCC 4 cut(s) 159, 549, 909, 1108
BspMAI CTGCAG 2 cut(s) 231, 942
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 3 cut(s) 227, 688, 783
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 550
BssMI GATC 5 cut(s) 73, 219, 251, 693, 775
BssNI GRCGYC 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 4 cut(s) 372, 535, 808, 1011
Bst6I CTCTTC 3 cut(s) 812, 828, 962
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 255, 801, 945
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 3 cut(s) 234, 406, 844
BstHHI GCGC 2 cut(s) 339, 531
BstKTI GATC 5 cut(s) 76, 222, 254, 696, 778
BstMAI GTCTC 3 cut(s) 199, 797, 1040
BstMBI GATC 5 cut(s) 73, 219, 251, 693, 775
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 336, 551, 554
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 3 cut(s) 227, 938, 987
BstV1I GCAGC 3 cut(s) 592, 924, 964
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 2 cut(s) 317, 499
BtgZI GCGATG 1 cut(s) 1056
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 234, 406, 844
BtsI GCAGTG 2 cut(s) 138, 224
BtsIMutI CAGTG 4 cut(s) 138, 224, 368, 540
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 2 cut(s) 339, 531
Cfr10I RCCGGY 1 cut(s) 550
CseI GACGC 1 cut(s) 92
CviAII CATG 2 cut(s) 19, 476
DdeI CTNAG 3 cut(s) 255, 801, 945
DpnI GATC 5 cut(s) 75, 221, 253, 695, 777
DpnII GATC 5 cut(s) 73, 219, 251, 693, 775
Eam1104I CTCTTC 3 cut(s) 812, 828, 962
EarI CTCTTC 3 cut(s) 812, 828, 962
Eco147I AGGCCT 1 cut(s) 499
Eco88I CYCGRG 2 cut(s) 144, 782
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 22, 479
FaiI YATR 9 cut(s) 20, 168, 272, 365, 432, 477, 490, 662, 1014
FaqI GGGAC 1 cut(s) 735
FatI CATG 2 cut(s) 18, 475
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 5 cut(s) 546, 555, 581, 938, 953
FokI GGATG 3 cut(s) 221, 413, 851
Fsp4HI GCNGC 5 cut(s) 546, 555, 581, 938, 953
FspBI CTAG 6 cut(s) 609, 624, 651, 878, 1050, 1141
FspI TGCGCA 1 cut(s) 338
GlaI GCGC 2 cut(s) 338, 530
GluI GCNGC 5 cut(s) 546, 555, 581, 938, 953
HaeIII GGCC 2 cut(s) 317, 499
HapII CCGG 3 cut(s) 551, 710, 911
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 339, 531
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 2 cut(s) 22, 479
Hin6I GCGC 2 cut(s) 337, 529
HinP1I GCGC 2 cut(s) 337, 529
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 2 cut(s) 188, 279
HpaII CCGG 3 cut(s) 551, 710, 911
HphI GGTGA 5 cut(s) 136, 274, 302, 530, 1028
Hpy166II GTNNAC 1 cut(s) 983
Hpy188I TCNGA 4 cut(s) 256, 802, 946, 963
Hpy188III TCNNGA 4 cut(s) 107, 146, 773, 782
Hpy8I GTNNAC 1 cut(s) 983
Hpy99I CGWCG 3 cut(s) 208, 211, 214
HpyAV CCTTC 3 cut(s) 88, 385, 1117
HpyCH4III ACNGT 4 cut(s) 372, 535, 808, 1011
HpyCH4IV ACGT 4 cut(s) 114, 206, 715, 748
HpyCH4V TGCA 8 cut(s) 35, 47, 53, 229, 420, 569, 580, 940
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 336, 551, 554
HpyF3I CTNAG 3 cut(s) 255, 801, 945
HpySE526I ACGT 4 cut(s) 114, 206, 715, 748
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 22, 479
HspAI GCGC 2 cut(s) 337, 529
Kzo9I GATC 5 cut(s) 73, 219, 251, 693, 775
LmnI GCTCC 3 cut(s) 184, 726, 1112
Lsp1109I GCAGC 3 cut(s) 592, 924, 964
LweI GCATC 6 cut(s) 4, 44, 243, 348, 440, 567
MaeI CTAG 6 cut(s) 609, 624, 651, 878, 1050, 1141
MaeII ACGT 4 cut(s) 114, 206, 715, 748
MaeIII GTNAC 3 cut(s) 469, 741, 808
MalI GATC 5 cut(s) 75, 221, 253, 695, 777
MboI GATC 5 cut(s) 73, 219, 251, 693, 775
MboII GAAGA 8 cut(s) 30, 122, 524, 770, 829, 845, 979, 1036
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 775
MluCI AATT 8 cut(s) 48, 410, 598, 634, 863, 869, 901, 916
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 3 cut(s) 551, 710, 911
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 336, 551, 554
NdeII GATC 5 cut(s) 73, 219, 251, 693, 775
NlaIII CATG 2 cut(s) 22, 479
NlaIV GGNNCC 4 cut(s) 159, 549, 909, 1108
NmeAIII GCCGAG 2 cut(s) 7, 550
NsbI TGCGCA 1 cut(s) 338
PceI AGGCCT 1 cut(s) 499
PfeI GAWTC 2 cut(s) 188, 279
PflFI GACNNNGTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 730
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 5 cut(s) 547, 556, 582, 939, 954
Psp1406I AACGTT 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 4 cut(s) 159, 549, 909, 1108
PstI CTGCAG 2 cut(s) 231, 942
PsuI RGATCY 1 cut(s) 775
PsyI GACNNNGTC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 5 cut(s) 546, 555, 581, 938, 953
Sau3AI GATC 5 cut(s) 73, 219, 251, 693, 775
ScrFI CCNGG 1 cut(s) 299
SfaNI GCATC 6 cut(s) 4, 44, 243, 348, 440, 567
SfcI CTRYAG 3 cut(s) 227, 938, 987
SgrAI CRCCGGYG 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 8 cut(s) 48, 410, 598, 634, 863, 869, 901, 916
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 2 cut(s) 545, 554
SspI AATATT 1 cut(s) 769
SspMI CTAG 6 cut(s) 609, 624, 651, 878, 1050, 1141
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 4 cut(s) 372, 535, 808, 1011
TaiI ACGT 4 cut(s) 117, 209, 718, 751
TaqI TCGA 2 cut(s) 250, 1115
TasI AATT 8 cut(s) 48, 410, 598, 634, 863, 869, 901, 916
TauI GCSGC 2 cut(s) 548, 557
TfiI GAWTC 2 cut(s) 188, 279
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 4 cut(s) 145, 231, 375, 540
TseI GCWGC 3 cut(s) 580, 937, 952
TspDTI ATGAA 2 cut(s) 806, 980
TspRI CASTG 4 cut(s) 145, 231, 375, 540
Tth111I GACNNNGTC 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 730
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 4 cut(s) 410, 634, 901, 916
XmiI GTMKAC 1 cut(s) 982
XspI CTAG 6 cut(s) 609, 624, 651, 878, 1050, 1141
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.