ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 99 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 169 |
| AccIII | TCCGGA | 1 cut(s) | 297 |
| AciI | CCGC | 1 cut(s) | 317 |
| AclWI | GGATC | 4 cut(s) | 47, 60, 190, 203 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 312 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 170 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 192, 304 |
| AgsI | TTSAA | 4 cut(s) | 149, 218, 311, 340 |
| AjnI | CCWGG | 2 cut(s) | 5, 258 |
| AluBI | AGCT | 1 cut(s) | 295 |
| AluI | AGCT | 1 cut(s) | 295 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| AlwI | GGATC | 4 cut(s) | 47, 60, 190, 203 |
| Aor13HI | TCCGGA | 1 cut(s) | 297 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 1 cut(s) | 312 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 153 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 2 cut(s) | 52, 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 2 cut(s) | 125, 208 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 257, 291 |
| BciT130I | CCWGG | 2 cut(s) | 7, 260 |
| BciVI | GTATCC | 1 cut(s) | 233 |
| BfuI | GTATCC | 1 cut(s) | 233 |
| Bme1390I | CCNGG | 2 cut(s) | 7, 260 |
| BmiI | GGNNCC | 2 cut(s) | 54, 197 |
| BmrFI | CCNGG | 2 cut(s) | 7, 260 |
| BmsI | GCATC | 1 cut(s) | 144 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaHI | GRCGYC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 89 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 192, 304 |
| Bse118I | RCCGGY | 1 cut(s) | 142 |
| BseAI | TCCGGA | 1 cut(s) | 297 |
| BseBI | CCWGG | 2 cut(s) | 7, 260 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseDI | CCNNGG | 2 cut(s) | 6, 89 |
| BseGI | GGATG | 1 cut(s) | 19 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 192, 304 |
| BseRI | GAGGAG | 1 cut(s) | 38 |
| Bsh1285I | CGRYCG | 1 cut(s) | 114 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiEI | CGRYCG | 1 cut(s) | 114 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiSI | CCGG | 2 cut(s) | 143, 298 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 192, 304 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp13I | TCCGGA | 1 cut(s) | 297 |
| Bsp143I | GATC | 2 cut(s) | 52, 195 |
| Bsp19I | CCATGG | 1 cut(s) | 89 |
| BspACI | CCGC | 1 cut(s) | 317 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspEI | TCCGGA | 1 cut(s) | 297 |
| BspHI | TCATGA | 1 cut(s) | 225 |
| BspLI | GGNNCC | 2 cut(s) | 54, 197 |
| BspPI | GGATC | 4 cut(s) | 47, 60, 190, 203 |
| BspQI | GCTCTTC | 1 cut(s) | 44 |
| BsrFI | RCCGGY | 1 cut(s) | 142 |
| BssAI | RCCGGY | 1 cut(s) | 142 |
| BssECI | CCNNGG | 2 cut(s) | 6, 89 |
| BssMI | GATC | 2 cut(s) | 52, 195 |
| BssNI | GRCGYC | 1 cut(s) | 170 |
| BssT1I | CCWWGG | 1 cut(s) | 89 |
| Bst2UI | CCWGG | 2 cut(s) | 7, 260 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstACI | GRCGYC | 1 cut(s) | 170 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 34 |
| BstDSI | CCRYGG | 1 cut(s) | 89 |
| BstF5I | GGATG | 1 cut(s) | 19 |
| BstKTI | GATC | 2 cut(s) | 55, 198 |
| BstMBI | GATC | 2 cut(s) | 52, 195 |
| BstMCI | CGRYCG | 1 cut(s) | 114 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 34, 43, 85, 113, 325 |
| BstNI | CCWGG | 2 cut(s) | 7, 260 |
| BstSCI | CCNGG | 2 cut(s) | 5, 258 |
| BstX2I | RGATCY | 2 cut(s) | 52, 195 |
| BstYI | RGATCY | 2 cut(s) | 52, 195 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuI | GTATCC | 1 cut(s) | 233 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtgI | CCRYGG | 1 cut(s) | 89 |
| BtsCI | GGATG | 1 cut(s) | 19 |
| CciI | TCATGA | 1 cut(s) | 225 |
| Cfr10I | RCCGGY | 1 cut(s) | 142 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CseI | GACGC | 1 cut(s) | 159 |
| CviAII | CATG | 4 cut(s) | 90, 104, 139, 226 |
| CviJI | RGCY | 4 cut(s) | 5, 122, 295, 328 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 122, 295, 328 |
| DpnI | GATC | 2 cut(s) | 54, 197 |
| DpnII | GATC | 2 cut(s) | 52, 195 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 169 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 169 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| Eco130I | CCWWGG | 1 cut(s) | 89 |
| Eco32I | GATATC | 1 cut(s) | 265 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| EcoRII | CCWGG | 2 cut(s) | 5, 258 |
| EcoRV | GATATC | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 1 cut(s) | 89 |
| ErhI | CCWWGG | 1 cut(s) | 89 |
| FaeI | CATG | 4 cut(s) | 93, 107, 142, 229 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 4 cut(s) | 89, 103, 138, 225 |
| FokI | GGATG | 1 cut(s) | 26 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 2 cut(s) | 143, 298 |
| HgaI | GACGC | 1 cut(s) | 159 |
| Hin1I | GRCGYC | 1 cut(s) | 170 |
| Hin1II | CATG | 4 cut(s) | 93, 107, 142, 229 |
| HinfI | GANTC | 1 cut(s) | 222 |
| HpaII | CCGG | 2 cut(s) | 143, 298 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 72, 212 |
| Hpy188III | TCNNGA | 3 cut(s) | 226, 289, 298 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 2 cut(s) | 197, 277 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 34, 43, 85, 113, 325 |
| Hsp92I | GRCGYC | 1 cut(s) | 170 |
| Hsp92II | CATG | 4 cut(s) | 93, 107, 142, 229 |
| Kpn2I | TCCGGA | 1 cut(s) | 297 |
| Kzo9I | GATC | 2 cut(s) | 52, 195 |
| LguI | GCTCTTC | 1 cut(s) | 44 |
| LmnI | GCTCC | 2 cut(s) | 25, 300 |
| LpnPI | CCDG | 7 cut(s) | 19, 69, 156, 176, 245, 272, 311 |
| LweI | GCATC | 1 cut(s) | 144 |
| MalI | GATC | 2 cut(s) | 54, 197 |
| MboI | GATC | 2 cut(s) | 52, 195 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MflI | RGATCY | 2 cut(s) | 52, 195 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 312 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 231 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MnlI | CCTC | 3 cut(s) | 16, 24, 74 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 297 |
| MroXI | GAANNNNTTC | 1 cut(s) | 153 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 321 |
| MslI | CAYNNNNRTG | 2 cut(s) | 230, 340 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 143, 298 |
| MspR9I | CCNGG | 2 cut(s) | 7, 260 |
| MvaI | CCWGG | 2 cut(s) | 7, 260 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 34, 43, 85, 113, 325 |
| NcoI | CCATGG | 1 cut(s) | 89 |
| NdeII | GATC | 2 cut(s) | 52, 195 |
| NlaIII | CATG | 4 cut(s) | 93, 107, 142, 229 |
| NlaIV | GGNNCC | 2 cut(s) | 54, 197 |
| PagI | TCATGA | 1 cut(s) | 225 |
| PciSI | GCTCTTC | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 153 |
| PfoI | TCCNGGA | 1 cut(s) | 258 |
| PleI | GAGTC | 1 cut(s) | 230 |
| PpsI | GAGTC | 1 cut(s) | 230 |
| PsiI | TTATAA | 1 cut(s) | 99 |
| Psp6I | CCWGG | 2 cut(s) | 5, 258 |
| PspGI | CCWGG | 2 cut(s) | 5, 258 |
| PspN4I | GGNNCC | 2 cut(s) | 54, 197 |
| PsuI | RGATCY | 2 cut(s) | 52, 195 |
| RseI | CAYNNNNRTG | 2 cut(s) | 230, 340 |
| SapI | GCTCTTC | 1 cut(s) | 44 |
| SaqAI | TTAA | 1 cut(s) | 321 |
| Sau3AI | GATC | 2 cut(s) | 52, 195 |
| SchI | GAGTC | 1 cut(s) | 231 |
| ScrFI | CCNGG | 2 cut(s) | 7, 260 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 3 cut(s) | 85, 288, 297 |
| SfaNI | GCATC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 230, 340 |
| Sse9I | AATT | 1 cut(s) | 312 |
| SsiI | CCGC | 1 cut(s) | 317 |
| StyD4I | CCNGG | 2 cut(s) | 5, 258 |
| StyI | CCWWGG | 1 cut(s) | 89 |
| TaqI | TCGA | 1 cut(s) | 267 |
| TaqII | GACCGA | 1 cut(s) | 100 |
| TasI | AATT | 1 cut(s) | 312 |
| Tru1I | TTAA | 1 cut(s) | 321 |
| Tru9I | TTAA | 1 cut(s) | 321 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| XapI | RAATTY | 1 cut(s) | 312 |
| XmnI | GAANNNNTTC | 1 cut(s) | 153 |