Rmu_sc0003693.1_g000004

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
Physical Location & Seq
Reverse (-)
26435 .. 27248
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000004.1.cds

Sequence Viewer

Length: 615 bp
atgactatgataggttgtacccttggggattttcaggagattgacaagaccggaaagaaggctggaaagcttcacatttgggttgaaatctcattgaacaggccgctatcctttaagcggtggtattgggtggaagatgaagtggaattcctatgtaaattcaagtatgataaactatttggcccctgtgctatttgtggtttggtgactcacgtcagattgccttgctcggggccaatgttagaagaggaggatgatgaggtagagaggactgtgctgggggagcaacatatagctatagtgccgacaactttgagtggtggtctgcaactgcatactgtgtcgatagcgttgacttcggggtcttctgctggtggttgcataaccttgaatgctaggaagcttagcttggttgtgggcaagcgtaatctgaacctgaaaccggaaagccttgggttggtctctctgccggaagaagacatttctggcagtgggaagaggaagcgaggacgtcctgctggcagcaagaataaactgccatatggggagaagaagaagggtgcagcgcctgatgacgctgtgaaggtgaagaaatctaccaattcagaaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.2

Weight (kDa)

8.84

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AatII GACGTC 1 cut(s) 514
AciI CCGC 2 cut(s) 104, 118
AcsI RAATTY 2 cut(s) 146, 158
AcyI GRCGYC 1 cut(s) 511
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 4 cut(s) 117, 230, 442, 457
AgsI TTSAA 4 cut(s) 86, 97, 163, 391
AjiI CACGTC 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 4 cut(s) 70, 296, 403, 408
AluI AGCT 4 cut(s) 70, 296, 403, 408
Alw26I GTCTC 1 cut(s) 466
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 3 cut(s) 101, 181, 233
ApeKI GCWGC 2 cut(s) 522, 563
ApoI RAATTY 2 cut(s) 146, 158
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 182, 233
AsuHPI GGTGA 2 cut(s) 217, 598
AvaI CYCGRG 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 357, 483
BbvI GCAGC 2 cut(s) 534, 575
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 569
BisI GCNGC 3 cut(s) 104, 523, 564
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 3 cut(s) 105, 524, 565
BmeT110I CYCGRG 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 182, 233
BmiI GGNNCC 2 cut(s) 184, 234
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 357, 483
Bpu1102I GCTNAGC 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 511
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 22, 451
BsaWI WCCGGW 2 cut(s) 50, 442
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 230, 442, 457
BseDI CCNNGG 2 cut(s) 22, 451
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 4 cut(s) 117, 230, 442, 457
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 534, 575
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 3 cut(s) 103, 183, 235
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 3 cut(s) 51, 443, 470
BslI CCNNNNNNNGG 4 cut(s) 117, 230, 442, 457
BsmAI GTCTC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 3 cut(s) 103, 183, 235
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 229
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 2 cut(s) 104, 118
BspANI GGCC 3 cut(s) 103, 183, 235
BspLI GGNNCC 2 cut(s) 184, 234
BspTNI GGTCTC 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 22, 451
BssNI GRCGYC 1 cut(s) 511
BssT1I CCWWGG 2 cut(s) 22, 451
Bst4CI ACNGT 2 cut(s) 274, 340
Bst6I CTCTTC 2 cut(s) 240, 491
BstACI GRCGYC 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 422, 520
BstDEI CTNAG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstMAI GTCTC 1 cut(s) 466
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 534, 575
BstV2I GAAGAC 2 cut(s) 357, 483
BsuRI GGCC 3 cut(s) 103, 183, 235
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 422, 520
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 182, 233
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 18
CviJI RGCY 9 cut(s) 62, 70, 103, 183, 235, 296, 403, 408, 450
CviKI_1 RGCY 9 cut(s) 62, 70, 103, 183, 235, 296, 403, 408, 450
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 404
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 240, 491
EarI CTCTTC 2 cut(s) 240, 491
Eco130I CCWWGG 2 cut(s) 22, 451
Eco31I GGTCTC 1 cut(s) 466
Eco88I CYCGRG 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 22, 451
ErhI CCWWGG 2 cut(s) 22, 451
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 3 cut(s) 104, 523, 564
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 104, 523, 564
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 567
GluI GCNGC 3 cut(s) 104, 523, 564
GsaI CCCAGC 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 3 cut(s) 103, 183, 235
HapII CCGG 3 cut(s) 51, 443, 470
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 568
Hin1I GRCGYC 1 cut(s) 511
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 2 cut(s) 68, 401
HinfI GANTC 1 cut(s) 208
HpaII CCGG 3 cut(s) 51, 443, 470
HphI GGTGA 2 cut(s) 217, 598
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 218, 432, 607
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 4 cut(s) 52, 550, 577, 602
HpyCH4III ACNGT 2 cut(s) 274, 340
HpyCH4IV ACGT 2 cut(s) 213, 511
HpyCH4V TGCA 4 cut(s) 328, 334, 381, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 2 cut(s) 213, 511
Hsp92I GRCGYC 1 cut(s) 511
HspAI GCGC 1 cut(s) 566
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 534, 575
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 213, 511
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 9 cut(s) 146, 257, 357, 485, 488, 508, 562, 565, 601
MluCI AATT 3 cut(s) 146, 158, 601
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 6 cut(s) 241, 244, 253, 261, 492, 500
MseI TTAA 1 cut(s) 114
MspI CCGG 3 cut(s) 51, 443, 470
Mva1269I GAATGC 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 541
NlaIV GGNNCC 2 cut(s) 184, 234
NmuCI GTSAC 1 cut(s) 205
PctI GAATGC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 105, 524, 565
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 184, 234
PspPI GGNCC 2 cut(s) 182, 233
PstNI CAGNNNCTG 1 cut(s) 569
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 104, 523, 564
Sau96I GGNCC 2 cut(s) 182, 233
SchI GAGTC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 146, 158, 601
SsiI CCGC 2 cut(s) 104, 118
SspMI CTAG 1 cut(s) 396
StyI CCWWGG 2 cut(s) 22, 451
TaaI ACNGT 2 cut(s) 274, 340
TaiI ACGT 2 cut(s) 216, 514
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 146, 158, 601
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 522, 563
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 496
XapI RAATTY 2 cut(s) 146, 158
XspI CTAG 1 cut(s) 396
ZraI GACGTC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.