Rmu_sc0000054.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000054.1
OG0000187
Physical Location & Seq
Forward (+)
81928 .. 82677
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000054.1_g000023.1.cds

Sequence Viewer

Length: 630 bp
atgccatgcatggctgctatattagccacctctcttgctattgctgaaggtaagaggcagattgatttgcgcccaacacagggccaaggtttacgacaagcaaacgtgttcttggtgggcaaacttctcacagcccgtgactacaagatcaagtcattcatggggatgtttcgcaacgcctggagtattcatggagcattgcaagtggaggaagaggaggagcagatggtactcttcactttgttggaccctgcatatcgtgttcgggagatcccgccggcgttccggtcggaaagagttatgactatgattggctacacattggaggattttcaggagatcgacaagaattccaagaaggctgggaagcttcgggttagggctgagatcccattgaataagccattgccgtttaagcgatggtatctagtggaggacgaagttgagtttcggtgcaagttccggtatgacaagctgtttgggcgatgtttcacttgtggccttgtaacgcacgttggactaccgtgcttggggccggatttggatgaggacgatgatgctgctgagcagactgtgttgggatcccagggttgggctttggaggcaaatgggggtggcatgccaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

209

Amino Acids

23.65

Weight (kDa)

5.83

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 275
AclWI GGATC 4 cut(s) 265, 382, 576, 589
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 5 cut(s) 79, 80, 530, 591, 592
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 2 cut(s) 179, 585
AluBI AGCT 2 cut(s) 370, 475
AluI AGCT 2 cut(s) 370, 475
AlwI GGATC 4 cut(s) 265, 382, 576, 589
AoxI GGCC 3 cut(s) 82, 499, 533
ApeKI GCWGC 2 cut(s) 14, 560
ApoI RAATTY 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 82, 247, 533
AvaII GGWCC 1 cut(s) 247
BamHI GGATCC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 220, 414
BceAI ACGGC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 2 cut(s) 181, 587
BfaI CTAG 1 cut(s) 428
BisI GCNGC 2 cut(s) 15, 561
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 2 cut(s) 16, 562
Bme1390I CCNGG 2 cut(s) 181, 587
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 82, 247, 533
BmiI GGNNCC 3 cut(s) 249, 534, 583
BmrFI CCNGG 2 cut(s) 181, 587
BmsI GCATC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 85, 585, 586
BsaWI WCCGGW 2 cut(s) 285, 462
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 80, 530, 591, 592
Bse118I RCCGGY 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 197, 404
BseBI CCWGG 2 cut(s) 181, 587
BseDI CCNNGG 3 cut(s) 85, 585, 586
BseGI GGATG 2 cut(s) 171, 550
BseLI CCNNNNNNNGG 5 cut(s) 79, 80, 530, 591, 592
BseMI GCAATG 2 cut(s) 197, 404
BseMII CTCAG 2 cut(s) 375, 555
BseRI GAGGAG 2 cut(s) 230, 233
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 84, 501, 535
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 4 cut(s) 278, 286, 463, 536
BslI CCNNNNNNNGG 5 cut(s) 79, 80, 530, 591, 592
BsnI GGCC 3 cut(s) 84, 501, 535
Bsp143I GATC 5 cut(s) 147, 270, 339, 387, 581
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 1 cut(s) 275
BspANI GGCC 3 cut(s) 84, 501, 535
BspCNI CTCAG 2 cut(s) 376, 556
BspLI GGNNCC 3 cut(s) 249, 534, 583
BspPI GGATC 4 cut(s) 265, 382, 576, 589
BsrDI GCAATG 2 cut(s) 197, 404
BsrFI RCCGGY 1 cut(s) 277
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 85, 585, 586
BssMI GATC 5 cut(s) 147, 270, 339, 387, 581
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 181, 587
Bst4CI ACNGT 2 cut(s) 525, 574
Bst6I CTCTTC 2 cut(s) 207, 239
BstC8I GCNNGC 2 cut(s) 279, 620
BstDEI CTNAG 2 cut(s) 384, 564
BstF5I GGATG 2 cut(s) 171, 550
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 5 cut(s) 150, 273, 342, 390, 584
BstMBI GATC 5 cut(s) 147, 270, 339, 387, 581
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 4 cut(s) 23, 415, 481, 602
BstNI CCWGG 2 cut(s) 181, 587
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 179, 585
BstV1I GCAGC 1 cut(s) 547
BstX2I RGATCY 3 cut(s) 270, 387, 581
BstYI RGATCY 3 cut(s) 270, 387, 581
BsuRI GGCC 3 cut(s) 84, 501, 535
BtgZI GCGATG 2 cut(s) 433, 499
BtsCI GGATG 2 cut(s) 171, 550
Cac8I GCNNGC 2 cut(s) 279, 620
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 82, 247, 533
Csp6I GTAC 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 6, 10, 160, 191, 619
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 384, 564
DpnI GATC 5 cut(s) 149, 272, 341, 389, 583
DpnII GATC 5 cut(s) 147, 270, 339, 387, 581
Eam1104I CTCTTC 2 cut(s) 207, 239
EarI CTCTTC 2 cut(s) 207, 239
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 179, 585
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 5 cut(s) 9, 13, 163, 194, 622
FatI CATG 5 cut(s) 5, 9, 159, 190, 618
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 15, 561
FokI GGATG 2 cut(s) 178, 557
Fsp4HI GCNGC 2 cut(s) 15, 561
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 15, 561
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 3 cut(s) 84, 501, 535
HapII CCGG 4 cut(s) 278, 286, 463, 536
HhaI GCGC 1 cut(s) 72
Hin1II CATG 5 cut(s) 9, 13, 163, 194, 622
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 4 cut(s) 278, 286, 463, 536
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 266, 335
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 41, 352
HpyCH4III ACNGT 2 cut(s) 525, 574
HpyCH4IV ACGT 2 cut(s) 105, 513
HpyCH4V TGCA 4 cut(s) 9, 202, 254, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 415, 481, 602
HpyF3I CTNAG 2 cut(s) 384, 564
HpySE526I ACGT 2 cut(s) 105, 513
Hsp92II CATG 5 cut(s) 9, 13, 163, 194, 622
HspAI GCGC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 5 cut(s) 147, 270, 339, 387, 581
LmnI GCTCC 2 cut(s) 194, 220
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 428
MaeII ACGT 2 cut(s) 105, 513
MaeIII GTNAC 2 cut(s) 137, 505
MalI GATC 5 cut(s) 149, 272, 341, 389, 583
MboI GATC 5 cut(s) 147, 270, 339, 387, 581
MboII GAAGA 2 cut(s) 224, 226
MflI RGATCY 3 cut(s) 270, 387, 581
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 3 cut(s) 225, 270, 496
MnlI CCTC 9 cut(s) 40, 48, 202, 208, 211, 319, 427, 541, 595
Mph1103I ATGCAT 1 cut(s) 11
MreI CGCCGGCG 1 cut(s) 277
MroNI GCCGGC 1 cut(s) 277
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 164, 623
MspI CCGG 4 cut(s) 278, 286, 463, 536
MspR9I CCNGG 2 cut(s) 181, 587
MvaI CCWGG 2 cut(s) 181, 587
MwoI GCNNNNNNNGC 4 cut(s) 23, 415, 481, 602
NaeI GCCGGC 1 cut(s) 279
NdeII GATC 5 cut(s) 147, 270, 339, 387, 581
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 5 cut(s) 9, 13, 163, 194, 622
NlaIV GGNNCC 3 cut(s) 249, 534, 583
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 11
NspI RCATGY 1 cut(s) 622
PaeI GCATGC 1 cut(s) 622
PasI CCCWGGG 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 16, 562
Psp6I CCWGG 2 cut(s) 179, 585
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 2 cut(s) 179, 585
PspN4I GGNNCC 3 cut(s) 249, 534, 583
PspPI GGNCC 3 cut(s) 82, 247, 533
PsuI RGATCY 3 cut(s) 270, 387, 581
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 2 cut(s) 164, 623
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 15, 561
Sau3AI GATC 5 cut(s) 147, 270, 339, 387, 581
Sau96I GGNCC 3 cut(s) 82, 247, 533
ScrFI CCNGG 2 cut(s) 181, 587
SetI ASST 7 cut(s) 32, 52, 91, 108, 372, 477, 516
SfaNI GCATC 1 cut(s) 547
SgrAI CRCCGGYG 1 cut(s) 277
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 164, 623
SphI GCATGC 1 cut(s) 622
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 179, 585
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 525, 574
TaiI ACGT 2 cut(s) 108, 516
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 349
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 14, 560
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 148, 179
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 1 cut(s) 349
XceI RCATGY 1 cut(s) 622
XspI CTAG 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.