ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 82 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 35, 670 |
| AatII | GACGTC | 1 cut(s) | 823 |
| Acc36I | ACCTGC | 1 cut(s) | 82 |
| AccI | GTMKAC | 2 cut(s) | 653, 662 |
| AciI | CCGC | 4 cut(s) | 115, 177, 413, 427 |
| AclWI | GGATC | 2 cut(s) | 36, 131 |
| AcsI | RAATTY | 2 cut(s) | 455, 467 |
| AcvI | CACGTG | 1 cut(s) | 220 |
| AcyI | GRCGYC | 1 cut(s) | 820 |
| AfaI | GTAC | 2 cut(s) | 182, 328 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 51, 193, 426, 751, 766 |
| AgsI | TTSAA | 4 cut(s) | 395, 406, 472, 700 |
| AjiI | CACGTC | 1 cut(s) | 523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 701, 733 |
| AluBI | AGCT | 4 cut(s) | 379, 605, 712, 717 |
| AluI | AGCT | 4 cut(s) | 379, 605, 712, 717 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| Alw26I | GTCTC | 2 cut(s) | 90, 775 |
| AlwI | GGATC | 2 cut(s) | 36, 131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 878 |
| Ama87I | CYCGRG | 1 cut(s) | 24 |
| AoxI | GGCC | 2 cut(s) | 410, 490 |
| ApeKI | GCWGC | 1 cut(s) | 831 |
| ApoI | RAATTY | 2 cut(s) | 455, 467 |
| AseI | ATTAAT | 1 cut(s) | 78 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 237 |
| AspS9I | GGNCC | 1 cut(s) | 491 |
| AsuC2I | CCSGG | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 526, 907 |
| AvaI | CYCGRG | 1 cut(s) | 24 |
| BbrPI | CACGTG | 1 cut(s) | 220 |
| BbsI | GAAGAC | 2 cut(s) | 666, 792 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 843 |
| BcnI | CCSGG | 1 cut(s) | 149 |
| BcoDI | GTCTC | 2 cut(s) | 90, 775 |
| BfaI | CTAG | 2 cut(s) | 50, 705 |
| BfmI | CTRYAG | 2 cut(s) | 89, 606 |
| BfuAI | ACCTGC | 1 cut(s) | 82 |
| BisI | GCNGC | 2 cut(s) | 413, 832 |
| BlpI | GCTNAGC | 1 cut(s) | 713 |
| BlsI | GCNGC | 2 cut(s) | 414, 833 |
| Bme1390I | CCNGG | 1 cut(s) | 149 |
| BmeT110I | CYCGRG | 1 cut(s) | 24 |
| BmgBI | CACGTC | 1 cut(s) | 523 |
| BmgT120I | GGNCC | 1 cut(s) | 491 |
| BmiI | GGNNCC | 3 cut(s) | 240, 493, 543 |
| BmrFI | CCNGG | 1 cut(s) | 149 |
| BmsI | GCATC | 2 cut(s) | 200, 213 |
| BoxI | GACNNNNGTC | 1 cut(s) | 521 |
| BpiI | GAAGAC | 2 cut(s) | 666, 792 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 713 |
| BpuMI | CCSGG | 1 cut(s) | 149 |
| BsaAI | YACGTR | 1 cut(s) | 220 |
| BsaHI | GRCGYC | 1 cut(s) | 820 |
| BsaI | GGTCTC | 2 cut(s) | 90, 775 |
| BsaJI | CCNNGG | 2 cut(s) | 331, 760 |
| BsaWI | WCCGGW | 2 cut(s) | 359, 751 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 533, 563 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 51, 193, 426, 751, 766 |
| Bse3DI | GCAATG | 2 cut(s) | 18, 70 |
| BseDI | CCNNGG | 2 cut(s) | 331, 760 |
| BseGI | GGATG | 2 cut(s) | 60, 568 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 51, 193, 426, 751, 766 |
| BseMI | GCAATG | 2 cut(s) | 18, 70 |
| BseRI | GAGGAG | 3 cut(s) | 113, 569, 572 |
| BseXI | GCAGC | 1 cut(s) | 843 |
| BseYI | CCCAGC | 1 cut(s) | 586 |
| BsgI | GTGCAG | 1 cut(s) | 891 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 2 cut(s) | 412, 492 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BsiHKCI | CYCGRG | 1 cut(s) | 24 |
| BsiSI | CCGG | 3 cut(s) | 148, 360, 752 |
| BslFI | GGGAC | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 51, 193, 426, 751, 766 |
| BsmAI | GTCTC | 2 cut(s) | 90, 775 |
| BsmFI | GGGAC | 1 cut(s) | 41 |
| BsmI | GAATGC | 1 cut(s) | 706 |
| BsnI | GGCC | 2 cut(s) | 412, 492 |
| Bso31I | GGTCTC | 2 cut(s) | 90, 775 |
| BsoBI | CYCGRG | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 2 cut(s) | 41, 136 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 713 |
| BspACI | CCGC | 4 cut(s) | 115, 177, 413, 427 |
| BspANI | GGCC | 2 cut(s) | 412, 492 |
| BspLI | GGNNCC | 3 cut(s) | 240, 493, 543 |
| BspMAI | CTGCAG | 1 cut(s) | 93 |
| BspMI | ACCTGC | 1 cut(s) | 82 |
| BspPI | GGATC | 2 cut(s) | 36, 131 |
| BspTNI | GGTCTC | 2 cut(s) | 90, 775 |
| BsrDI | GCAATG | 2 cut(s) | 18, 70 |
| BssECI | CCNNGG | 2 cut(s) | 331, 760 |
| BssMI | GATC | 2 cut(s) | 41, 136 |
| BssNI | GRCGYC | 1 cut(s) | 820 |
| BssT1I | CCWWGG | 2 cut(s) | 331, 760 |
| Bst4CI | ACNGT | 2 cut(s) | 583, 649 |
| Bst6I | CTCTTC | 1 cut(s) | 800 |
| BstACI | GRCGYC | 1 cut(s) | 820 |
| BstBAI | YACGTR | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 731, 829 |
| BstDEI | CTNAG | 1 cut(s) | 713 |
| BstF5I | GGATG | 2 cut(s) | 60, 568 |
| BstKTI | GATC | 2 cut(s) | 44, 139 |
| BstMAI | GTCTC | 2 cut(s) | 90, 775 |
| BstMBI | GATC | 2 cut(s) | 41, 136 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 592 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 521 |
| BstSCI | CCNGG | 1 cut(s) | 147 |
| BstSFI | CTRYAG | 2 cut(s) | 89, 606 |
| BstV1I | GCAGC | 1 cut(s) | 843 |
| BstV2I | GAAGAC | 2 cut(s) | 666, 792 |
| BstX2I | RGATCY | 2 cut(s) | 41, 136 |
| BstYI | RGATCY | 2 cut(s) | 41, 136 |
| BsuRI | GGCC | 2 cut(s) | 412, 492 |
| BtrI | CACGTC | 1 cut(s) | 523 |
| BtsCI | GGATG | 2 cut(s) | 60, 568 |
| BtsI | GCAGTG | 2 cut(s) | 805, 879 |
| BtsIMutI | CAGTG | 2 cut(s) | 805, 879 |
| BveI | ACCTGC | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 731, 829 |
| CaiI | CAGNNNCTG | 1 cut(s) | 878 |
| Cfr13I | GGNCC | 1 cut(s) | 491 |
| CseI | GACGC | 1 cut(s) | 893 |
| Csp6I | GTAC | 2 cut(s) | 181, 327 |
| CviAII | CATG | 3 cut(s) | 174, 188, 207 |
| CviQI | GTAC | 2 cut(s) | 181, 327 |
| DdeI | CTNAG | 1 cut(s) | 713 |
| DpnI | GATC | 2 cut(s) | 43, 138 |
| DpnII | GATC | 2 cut(s) | 41, 136 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 35, 670 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 35, 670 |
| Eam1104I | CTCTTC | 1 cut(s) | 800 |
| EarI | CTCTTC | 1 cut(s) | 800 |
| Eco130I | CCWWGG | 2 cut(s) | 331, 760 |
| Eco31I | GGTCTC | 2 cut(s) | 90, 775 |
| Eco72I | CACGTG | 1 cut(s) | 220 |
| Eco88I | CYCGRG | 1 cut(s) | 24 |
| EcoRI | GAATTC | 1 cut(s) | 455 |
| EcoT14I | CCWWGG | 2 cut(s) | 331, 760 |
| EcoT22I | ATGCAT | 1 cut(s) | 193 |
| ErhI | CCWWGG | 2 cut(s) | 331, 760 |
| FaeI | CATG | 3 cut(s) | 177, 191, 210 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 701, 733 |
| FaqI | GGGAC | 1 cut(s) | 41 |
| FatI | CATG | 3 cut(s) | 173, 187, 206 |
| FauI | CCCGC | 2 cut(s) | 108, 170 |
| FauNDI | CATATG | 1 cut(s) | 850 |
| FblI | GTMKAC | 2 cut(s) | 653, 662 |
| Fnu4HI | GCNGC | 2 cut(s) | 413, 832 |
| FokI | GGATG | 2 cut(s) | 67, 575 |
| Fsp4HI | GCNGC | 2 cut(s) | 413, 832 |
| FspBI | CTAG | 2 cut(s) | 50, 705 |
| GluI | GCNGC | 2 cut(s) | 413, 832 |
| GsaI | CCCAGC | 1 cut(s) | 590 |
| HaeIII | GGCC | 2 cut(s) | 412, 492 |
| HapII | CCGG | 3 cut(s) | 148, 360, 752 |
| HgaI | GACGC | 1 cut(s) | 893 |
| Hin1I | GRCGYC | 1 cut(s) | 820 |
| Hin1II | CATG | 3 cut(s) | 177, 191, 210 |
| HincII | GTYRAC | 2 cut(s) | 654, 663 |
| HindII | GTYRAC | 2 cut(s) | 654, 663 |
| HindIII | AAGCTT | 2 cut(s) | 377, 710 |
| HinfI | GANTC | 1 cut(s) | 517 |
| HpaII | CCGG | 3 cut(s) | 148, 360, 752 |
| HphI | GGTGA | 3 cut(s) | 319, 526, 907 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 654, 663 |
| Hpy188I | TCNGA | 8 cut(s) | 41, 136, 246, 301, 527, 541, 741, 916 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 160, 344 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 654, 663 |
| Hpy99I | CGWCG | 2 cut(s) | 527, 664 |
| HpyAV | CCTTC | 5 cut(s) | 157, 361, 859, 886, 911 |
| HpyCH4III | ACNGT | 2 cut(s) | 583, 649 |
| HpyCH4IV | ACGT | 4 cut(s) | 219, 522, 659, 820 |
| HpyCH4V | TGCA | 8 cut(s) | 63, 91, 191, 274, 637, 643, 690, 872 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 592 |
| HpyF3I | CTNAG | 1 cut(s) | 713 |
| HpySE526I | ACGT | 4 cut(s) | 219, 522, 659, 820 |
| Hsp92I | GRCGYC | 1 cut(s) | 820 |
| Hsp92II | CATG | 3 cut(s) | 177, 191, 210 |
| Kzo9I | GATC | 2 cut(s) | 41, 136 |
| LmnI | GCTCC | 3 cut(s) | 175, 541, 592 |
| Lsp1109I | GCAGC | 1 cut(s) | 843 |
| LweI | GCATC | 2 cut(s) | 200, 213 |
| MaeI | CTAG | 2 cut(s) | 50, 705 |
| MaeII | ACGT | 4 cut(s) | 219, 522, 659, 820 |
| MaeIII | GTNAC | 1 cut(s) | 514 |
| MalI | GATC | 2 cut(s) | 43, 138 |
| MboI | GATC | 2 cut(s) | 41, 136 |
| MboII | GAAGA | 8 cut(s) | 455, 666, 794, 797, 817, 871, 874, 910 |
| MflI | RGATCY | 2 cut(s) | 41, 136 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 4 cut(s) | 11, 455, 467, 910 |
| MlyI | GAGTC | 1 cut(s) | 511 |
| MmeI | TCCRAC | 1 cut(s) | 505 |
| Mph1103I | ATGCAT | 1 cut(s) | 193 |
| MroXI | GAANNNNTTC | 1 cut(s) | 237 |
| MseI | TTAA | 2 cut(s) | 78, 423 |
| MspA1I | CMGCKG | 1 cut(s) | 115 |
| MspI | CCGG | 3 cut(s) | 148, 360, 752 |
| MspR9I | CCNGG | 1 cut(s) | 149 |
| Mva1269I | GAATGC | 1 cut(s) | 706 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 592 |
| NciI | CCSGG | 1 cut(s) | 149 |
| NdeI | CATATG | 1 cut(s) | 850 |
| NdeII | GATC | 2 cut(s) | 41, 136 |
| NlaIII | CATG | 3 cut(s) | 177, 191, 210 |
| NlaIV | GGNNCC | 3 cut(s) | 240, 493, 543 |
| NmuCI | GTSAC | 1 cut(s) | 514 |
| NsiI | ATGCAT | 1 cut(s) | 193 |
| NspI | RCATGY | 1 cut(s) | 210 |
| PaeI | GCATGC | 1 cut(s) | 210 |
| PaqCI | CACCTGC | 1 cut(s) | 82 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 659 |
| PctI | GAATGC | 1 cut(s) | 706 |
| PdmI | GAANNNNTTC | 1 cut(s) | 237 |
| PflFI | GACNNNGTC | 1 cut(s) | 658 |
| PkrI | GCNGC | 2 cut(s) | 414, 833 |
| PleI | GAGTC | 1 cut(s) | 511 |
| PmaCI | CACGTG | 1 cut(s) | 220 |
| PmlI | CACGTG | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 511 |
| Ppu21I | YACGTR | 1 cut(s) | 220 |
| PshAI | GACNNNNGTC | 1 cut(s) | 521 |
| PshBI | ATTAAT | 1 cut(s) | 78 |
| PspCI | CACGTG | 1 cut(s) | 220 |
| PspFI | CCCAGC | 1 cut(s) | 586 |
| PspN4I | GGNNCC | 3 cut(s) | 240, 493, 543 |
| PspPI | GGNCC | 1 cut(s) | 491 |
| PstI | CTGCAG | 1 cut(s) | 93 |
| PstNI | CAGNNNCTG | 1 cut(s) | 878 |
| PsuI | RGATCY | 2 cut(s) | 41, 136 |
| PsyI | GACNNNGTC | 1 cut(s) | 658 |
| RsaI | GTAC | 2 cut(s) | 182, 328 |
| RsaNI | GTAC | 2 cut(s) | 181, 327 |
| SalI | GTCGAC | 2 cut(s) | 652, 661 |
| SaqAI | TTAA | 2 cut(s) | 78, 423 |
| SatI | GCNGC | 2 cut(s) | 413, 832 |
| Sau3AI | GATC | 2 cut(s) | 41, 136 |
| Sau96I | GGNCC | 1 cut(s) | 491 |
| SchI | GAGTC | 1 cut(s) | 511 |
| ScrFI | CCNGG | 1 cut(s) | 149 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SfaNI | GCATC | 2 cut(s) | 200, 213 |
| SfcI | CTRYAG | 2 cut(s) | 89, 606 |
| SphI | GCATGC | 1 cut(s) | 210 |
| Sse9I | AATT | 4 cut(s) | 11, 455, 467, 910 |
| SsiI | CCGC | 4 cut(s) | 115, 177, 413, 427 |
| SspMI | CTAG | 2 cut(s) | 50, 705 |
| StyD4I | CCNGG | 1 cut(s) | 147 |
| StyI | CCWWGG | 2 cut(s) | 331, 760 |
| TaaI | ACNGT | 2 cut(s) | 583, 649 |
| TaiI | ACGT | 4 cut(s) | 222, 525, 662, 823 |
| TaqI | TCGA | 2 cut(s) | 653, 662 |
| TasI | AATT | 4 cut(s) | 11, 455, 467, 910 |
| TauI | GCSGC | 1 cut(s) | 415 |
| Tru1I | TTAA | 2 cut(s) | 78, 423 |
| Tru9I | TTAA | 2 cut(s) | 78, 423 |
| TscAI | CASTG | 2 cut(s) | 805, 879 |
| TseFI | GTSAC | 1 cut(s) | 514 |
| TseI | GCWGC | 1 cut(s) | 831 |
| Tsp45I | GTSAC | 1 cut(s) | 514 |
| TspDTI | ATGAA | 1 cut(s) | 462 |
| TspRI | CASTG | 2 cut(s) | 805, 879 |
| Tth111I | GACNNNGTC | 1 cut(s) | 658 |
| VspI | ATTAAT | 1 cut(s) | 78 |
| XapI | RAATTY | 2 cut(s) | 455, 467 |
| XceI | RCATGY | 1 cut(s) | 210 |
| XmiI | GTMKAC | 2 cut(s) | 653, 662 |
| XmnI | GAANNNNTTC | 1 cut(s) | 237 |
| XspI | CTAG | 2 cut(s) | 50, 705 |
| ZraI | GACGTC | 1 cut(s) | 821 |
| Zsp2I | ATGCAT | 1 cut(s) | 193 |