Rmu_ssc0000064.1_g000022

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000064.1
Physical Location & Seq
Reverse (-)
134640 .. 136817
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000064.1_g000022.1.cds

Sequence Viewer

Length: 822 bp
atgtttgctagggaagcgctggtggacgaaagaactccaattgaagcagctagttcagttagagagattattgttttaattgaggagattccagatcgagttgagaagatgattacctcaattgaggaaggcaagggattgcgacaatctgaagttttcatggttgggaaactccttactgctaaggtgttcaaggtccgctccttcctagaccgggctagggtttggaggggtgcgccatggggttttaaccgtggtcatgtggctttggctgagtatgatggagttgtgccaattgagaaggtaccgctggtgaagtcctcttattggatcacgttacaaggtattccacctgctttcacatccgaaagggagatgacgatgattgggtataccttggcggactttcaggagattgataagcaaggaaagaaggttggtaagtatcgtatccggtatgataagttgtttgaaagatgtggggtgtgtggcttggtcacacacgttggcttgccatgctcggggccgccgctgaatgaggaagatgatgatgcggagcgtacagtgttgggcacgtcggcggccatgcaggccggcgtcatgcaggttggggttggggacctgggtacggggtcaggctctgaaggttgcagccatgatgctgctttcactcctatggtttcattcaatgggcatagcttgatattcaaaactcaactcccaagaatgatcccggagcatcttttgtgtaaccctacttacttggtgcagaaaccacgctgtaaggaaagcattagagagattggagattctgacaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

273

Amino Acids

30.28

Weight (kDa)

6.03

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 2 cut(s) 361, 595
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 392
AciI CCGC 7 cut(s) 199, 308, 401, 527, 530, 554, 581
AclWI GGATC 2 cut(s) 338, 724
AcoI YGGCCR 1 cut(s) 582
AcuI CTGAAG 2 cut(s) 171, 663
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 3 cut(s) 306, 562, 628
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 5 cut(s) 214, 220, 327, 521, 628
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 44, 193, 473, 688, 709
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 2 cut(s) 50, 699
AluI AGCT 2 cut(s) 50, 699
AlwI GGATC 2 cut(s) 338, 724
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 3 cut(s) 524, 582, 591
ApeKI GCWGC 3 cut(s) 47, 651, 662
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 2 cut(s) 19, 238
AspS9I GGNCC 3 cut(s) 196, 524, 619
AsuC2I CCSGG 2 cut(s) 215, 734
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 2 cut(s) 196, 619
BaeGI GKGCMC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 59, 649, 663
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 623
BciVI GTATCC 1 cut(s) 461
BcnI CCSGG 2 cut(s) 215, 734
BfaI CTAG 4 cut(s) 9, 51, 209, 219
BfoI RGCGCY 1 cut(s) 20
BfuAI ACCTGC 2 cut(s) 361, 595
BfuI GTATCC 1 cut(s) 461
BglI GCCNNNNNGGC 1 cut(s) 590
BisI GCNGC 6 cut(s) 48, 527, 530, 582, 652, 663
BlsI GCNGC 6 cut(s) 49, 528, 531, 583, 653, 664
Bme1390I CCNGG 3 cut(s) 215, 623, 734
Bme18I GGWCC 2 cut(s) 196, 619
BmeT110I CYCGRG 1 cut(s) 520
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 196, 524, 619
BmiI GGNNCC 3 cut(s) 306, 525, 620
BmrFI CCNGG 3 cut(s) 215, 623, 734
BmsI GCATC 3 cut(s) 541, 649, 748
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 215, 734
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 239, 253, 396, 622
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 220, 327, 521, 628
Bse118I RCCGGY 1 cut(s) 593
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 4 cut(s) 239, 253, 396, 622
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 5 cut(s) 214, 220, 327, 521, 628
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 3 cut(s) 59, 649, 663
BsgI GTGCAG 1 cut(s) 788
BshFI GGCC 3 cut(s) 526, 584, 593
BshNI GGYRCC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 4 cut(s) 214, 454, 594, 734
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 5 cut(s) 214, 220, 327, 521, 628
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 3 cut(s) 526, 584, 593
BsoBI CYCGRG 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 3 cut(s) 94, 330, 729
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 7 cut(s) 199, 308, 401, 527, 530, 554, 581
BspANI GGCC 3 cut(s) 526, 584, 593
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 3 cut(s) 306, 525, 620
BspMI ACCTGC 2 cut(s) 361, 595
BspPI GGATC 2 cut(s) 338, 724
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 593
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 4 cut(s) 239, 253, 396, 622
BssMI GATC 3 cut(s) 94, 330, 729
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 2 cut(s) 239, 396
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 254, 565
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 512, 591, 595
BstDEI CTNAG 2 cut(s) 183, 273
BstDSI CCRYGG 2 cut(s) 239, 253
BstF5I GGATG 1 cut(s) 362
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 238
BstKTI GATC 3 cut(s) 97, 333, 732
BstMBI GATC 3 cut(s) 94, 330, 729
BstMWI GCNNNNNNNGC 3 cut(s) 14, 516, 590
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 3 cut(s) 213, 621, 732
BstSLI GKGCMC 1 cut(s) 575
BstV1I GCAGC 3 cut(s) 59, 649, 663
BstZ17I GTATAC 1 cut(s) 393
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 3 cut(s) 526, 584, 593
BtgI CCRYGG 2 cut(s) 239, 253
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 570
BveI ACCTGC 2 cut(s) 361, 595
Cac8I GCNNGC 3 cut(s) 512, 591, 595
CaiI CAGNNNCTG 1 cut(s) 641
CfoI GCGC 2 cut(s) 19, 238
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 3 cut(s) 196, 524, 619
CseI GACGC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 305, 561, 627
CviAII CATG 7 cut(s) 160, 240, 260, 516, 586, 601, 656
CviQI GTAC 3 cut(s) 305, 561, 627
DdeI CTNAG 2 cut(s) 183, 273
DpnI GATC 3 cut(s) 96, 332, 731
DpnII GATC 3 cut(s) 94, 330, 729
EaeI YGGCCR 1 cut(s) 582
EciI GGCGGA 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 239, 396
Eco47I GGWCC 2 cut(s) 196, 619
Eco47III AGCGCT 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 171, 663
Eco88I CYCGRG 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 239, 396
ErhI CCWWGG 2 cut(s) 239, 396
FaeI CATG 7 cut(s) 163, 243, 263, 519, 589, 604, 659
FaqI GGGAC 1 cut(s) 632
FatI CATG 7 cut(s) 159, 239, 259, 515, 585, 600, 655
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 6 cut(s) 48, 527, 530, 582, 652, 663
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 6 cut(s) 48, 527, 530, 582, 652, 663
FspBI CTAG 4 cut(s) 9, 51, 209, 219
GlaI GCGC 2 cut(s) 18, 237
GluI GCNGC 6 cut(s) 48, 527, 530, 582, 652, 663
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 526, 584, 593
HapII CCGG 4 cut(s) 214, 454, 594, 734
HgaI GACGC 1 cut(s) 586
HhaI GCGC 2 cut(s) 19, 238
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 7 cut(s) 163, 243, 263, 519, 589, 604, 659
Hin6I GCGC 2 cut(s) 17, 236
HinP1I GCGC 2 cut(s) 17, 236
HinfI GANTC 2 cut(s) 88, 809
HpaII CCGG 4 cut(s) 214, 454, 594, 734
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 25, 393
Hpy188I TCNGA 4 cut(s) 151, 367, 643, 814
Hpy188III TCNNGA 2 cut(s) 92, 410
Hpy8I GTNNAC 2 cut(s) 25, 393
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 5 cut(s) 122, 214, 295, 427, 638
HpyCH4III ACNGT 2 cut(s) 254, 565
HpyCH4IV ACGT 3 cut(s) 335, 504, 575
HpyCH4V TGCA 4 cut(s) 589, 604, 651, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 516, 590
HpyF3I CTNAG 2 cut(s) 183, 273
HpySE526I ACGT 3 cut(s) 335, 504, 575
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 7 cut(s) 163, 243, 263, 519, 589, 604, 659
HspAI GCGC 2 cut(s) 17, 236
KpnI GGTACC 1 cut(s) 308
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
Kzo9I GATC 3 cut(s) 94, 330, 729
LmnI GCTCC 3 cut(s) 206, 556, 736
Lsp1109I GCAGC 3 cut(s) 59, 649, 663
LweI GCATC 3 cut(s) 541, 649, 748
MaeI CTAG 4 cut(s) 9, 51, 209, 219
MaeII ACGT 3 cut(s) 335, 504, 575
MaeIII GTNAC 3 cut(s) 336, 496, 749
MalI GATC 3 cut(s) 96, 332, 731
MbiI CCGCTC 1 cut(s) 201
MboI GATC 3 cut(s) 94, 330, 729
MboII GAAGA 2 cut(s) 118, 554
MfeI CAATTG 3 cut(s) 39, 120, 294
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 4 cut(s) 39, 78, 120, 294
MnlI CCTC 6 cut(s) 76, 118, 127, 222, 331, 532
MroNI GCCGGC 1 cut(s) 593
MseI TTAA 2 cut(s) 77, 249
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 2 cut(s) 310, 532
MspI CCGG 4 cut(s) 214, 454, 594, 734
MspR9I CCNGG 3 cut(s) 215, 623, 734
MunI CAATTG 3 cut(s) 39, 120, 294
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 14, 516, 590
NaeI GCCGGC 1 cut(s) 595
NciI CCSGG 2 cut(s) 215, 734
NcoI CCATGG 1 cut(s) 239
NdeII GATC 3 cut(s) 94, 330, 729
NgoMIV GCCGGC 1 cut(s) 593
NlaIII CATG 7 cut(s) 163, 243, 263, 519, 589, 604, 659
NlaIV GGNNCC 3 cut(s) 306, 525, 620
NmuCI GTSAC 1 cut(s) 496
PaqCI CACCTGC 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 595
PfeI GAWTC 2 cut(s) 88, 809
PfoI TCCNGGA 1 cut(s) 732
PkrI GCNGC 6 cut(s) 49, 528, 531, 583, 653, 664
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 306, 525, 620
PspPI GGNCC 3 cut(s) 196, 524, 619
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 306, 562, 628
RsaNI GTAC 3 cut(s) 305, 561, 627
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 2 cut(s) 77, 249
SatI GCNGC 6 cut(s) 48, 527, 530, 582, 652, 663
Sau3AI GATC 3 cut(s) 94, 330, 729
Sau96I GGNCC 3 cut(s) 196, 524, 619
ScrFI CCNGG 3 cut(s) 215, 623, 734
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 3 cut(s) 541, 649, 748
SfiI GGCCNNNNNGGCC 1 cut(s) 590
SinI GGWCC 2 cut(s) 196, 619
SmiMI CAYNNNNRTG 1 cut(s) 674
Sse9I AATT 4 cut(s) 39, 78, 120, 294
SsiI CCGC 7 cut(s) 199, 308, 401, 527, 530, 554, 581
SspMI CTAG 4 cut(s) 9, 51, 209, 219
StyD4I CCNGG 3 cut(s) 213, 621, 732
StyI CCWWGG 2 cut(s) 239, 396
TaaI ACNGT 2 cut(s) 254, 565
TaiI ACGT 3 cut(s) 338, 507, 578
TaqI TCGA 1 cut(s) 97
TasI AATT 4 cut(s) 39, 78, 120, 294
TauI GCSGC 3 cut(s) 529, 532, 584
TfiI GAWTC 2 cut(s) 88, 809
Tru1I TTAA 2 cut(s) 77, 249
Tru9I TTAA 2 cut(s) 77, 249
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 3 cut(s) 47, 651, 662
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 2 cut(s) 148, 672
TspRI CASTG 1 cut(s) 570
VpaK11BI GGWCC 2 cut(s) 196, 619
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 4 cut(s) 9, 51, 209, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.