Rmu_sc0002142.1_g000012

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002142.1
OG0000187
Physical Location & Seq
Forward (+)
48094 .. 48585
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002142.1_g000012.1.cds

Sequence Viewer

Length: 492 bp
atgaagcaggtcgatctgcgacctacgcaagggaagggtatgcgacaggcaaacgtgtttatggtggggaagcttctcaccgctcgggagtacaagaatcgatctttcctggggatgttccggaatgcatggagggtgaatggttcactacgcgtcgaggaggcggagtggcagagggttcttgtcactctatctgacgctaccggtcgggatcggatctggaagggagctccatggggttacaatcatgctccggttgccctagcctactacgatggcgtggctactattgaatcggtatctttcacctcagccacgttctggatcactttgcaaggcatccctcttgcgtttcgttctgagagggcgatgattatgatcgggttcaacctgggcgacttcaaggagattgacaaacaggccaagaaggttgggaagcttcgaatccgggtggaaatccctcttaaccggcctctgccctttcaacgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

10.48

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 2 cut(s) 81, 164
AclWI GGATC 3 cut(s) 219, 224, 332
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 29, 321
AflIII ACRYGT 2 cut(s) 54, 151
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 4 cut(s) 293, 388, 403, 485
AjnI CCWGG 2 cut(s) 108, 390
AluBI AGCT 3 cut(s) 73, 230, 439
AluI AGCT 3 cut(s) 73, 230, 439
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 3 cut(s) 219, 224, 332
Ama87I CYCGRG 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 2 cut(s) 420, 470
AsiGI ACCGGT 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 70, 148, 298
AsuII TTCGAA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 110, 392
BcnI CCSGG 1 cut(s) 449
BfaI CTAG 1 cut(s) 263
Bme1390I CCNGG 3 cut(s) 110, 392, 449
BmeT110I CYCGRG 1 cut(s) 84
BmrFI CCNGG 3 cut(s) 110, 392, 449
BmsI GCATC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 449
Bsa29I ATCGAT 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 109, 233, 391
BsaWI WCCGGW 3 cut(s) 120, 203, 253
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 321
Bse118I RCCGGY 2 cut(s) 203, 468
Bse8I GATNNNNATC 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 2 cut(s) 110, 392
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 109, 233, 391
BseGI GGATG 2 cut(s) 120, 339
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 2 cut(s) 29, 321
BseMII CTCAG 2 cut(s) 324, 351
BseRI GAGGAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 422, 472
BshTI ACCGGT 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 5 cut(s) 121, 204, 254, 448, 469
BslI CCNNNNNNNGG 2 cut(s) 29, 321
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 422, 472
BsoBI CYCGRG 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 6 cut(s) 13, 101, 211, 216, 324, 378
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 2 cut(s) 81, 164
BspANI GGCC 2 cut(s) 422, 472
BspCNI CTCAG 2 cut(s) 323, 352
BspDI ATCGAT 1 cut(s) 100
BspEI TCCGGA 1 cut(s) 120
BspFNI CGCG 1 cut(s) 153
BspPI GGATC 3 cut(s) 219, 224, 332
BspT104I TTCGAA 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 83
BsrFI RCCGGY 2 cut(s) 203, 468
BssAI RCCGGY 2 cut(s) 203, 468
BssECI CCNNGG 3 cut(s) 109, 233, 391
BssMI GATC 6 cut(s) 13, 101, 211, 216, 324, 378
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 110, 392
BstBI TTCGAA 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 310, 360
BstDSI CCRYGG 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 120, 339
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 6 cut(s) 16, 104, 214, 219, 327, 381
BstMBI GATC 6 cut(s) 13, 101, 211, 216, 324, 378
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 25, 257
BstNI CCWGG 2 cut(s) 110, 392
BstSCI CCNGG 3 cut(s) 108, 390, 447
BstUI CGCG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 100
BsuRI GGCC 2 cut(s) 422, 472
BsuTUI ATCGAT 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 2 cut(s) 120, 339
Cfr10I RCCGGY 2 cut(s) 203, 468
ClaI ATCGAT 1 cut(s) 100
CseI GACGC 2 cut(s) 142, 206
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 129, 234, 248
CviJI RGCY 8 cut(s) 73, 230, 266, 284, 314, 422, 439, 472
CviKI_1 RGCY 8 cut(s) 73, 230, 266, 284, 314, 422, 439, 472
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 310, 360
DpnI GATC 6 cut(s) 15, 103, 213, 218, 326, 380
DpnII GATC 6 cut(s) 13, 101, 211, 216, 324, 378
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 108, 390
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 132, 237, 251
FaiI YATR 6 cut(s) 41, 62, 130, 235, 249, 377
FatI CATG 3 cut(s) 128, 233, 247
FokI GGATG 2 cut(s) 127, 326
FriOI GRGCYC 1 cut(s) 232
FspBI CTAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 422, 472
HapII CCGG 5 cut(s) 121, 204, 254, 448, 469
HgaI GACGC 2 cut(s) 142, 206
Hin1II CATG 3 cut(s) 132, 237, 251
HindIII AAGCTT 2 cut(s) 71, 437
HinfI GANTC 3 cut(s) 97, 293, 444
HpaII CCGG 5 cut(s) 121, 204, 254, 448, 469
HphI GGTGA 3 cut(s) 70, 148, 298
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 196, 216, 361
Hpy188III TCNNGA 5 cut(s) 86, 121, 209, 220, 322
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 28, 217, 421
HpyCH4IV ACGT 2 cut(s) 54, 317
HpyCH4V TGCA 2 cut(s) 128, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 257
HpyF3I CTNAG 2 cut(s) 310, 360
HpySE526I ACGT 2 cut(s) 54, 317
Hsp92II CATG 3 cut(s) 132, 237, 251
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 6 cut(s) 13, 101, 211, 216, 324, 378
LmnI GCTCC 3 cut(s) 227, 235, 256
LweI GCATC 1 cut(s) 348
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 54, 317
MaeIII GTNAC 2 cut(s) 184, 239
MalI GATC 6 cut(s) 15, 103, 213, 218, 326, 380
MbiI CCGCTC 1 cut(s) 83
MboI GATC 6 cut(s) 13, 101, 211, 216, 324, 378
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 232
MluI ACGCGT 1 cut(s) 151
MnlI CCTC 9 cut(s) 126, 151, 154, 168, 319, 354, 357, 471, 483
Mph1103I ATGCAT 1 cut(s) 130
MroI TCCGGA 1 cut(s) 120
MseI TTAA 1 cut(s) 465
MspI CCGG 5 cut(s) 121, 204, 254, 448, 469
MspR9I CCNGG 3 cut(s) 110, 392, 449
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 110, 392
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 25, 257
NciI CCSGG 1 cut(s) 449
NcoI CCATGG 1 cut(s) 233
NdeII GATC 6 cut(s) 13, 101, 211, 216, 324, 378
NlaIII CATG 3 cut(s) 132, 237, 251
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 130
NspV TTCGAA 1 cut(s) 442
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 97, 293, 444
PflMI CCANNNNNTGG 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 108, 390
PspGI CCWGG 2 cut(s) 108, 390
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 6 cut(s) 13, 101, 211, 216, 324, 378
ScrFI CCNGG 3 cut(s) 110, 392, 449
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 442
SsiI CCGC 2 cut(s) 81, 164
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 108, 390, 447
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 2 cut(s) 57, 320
TaqI TCGA 4 cut(s) 12, 100, 156, 442
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 3 cut(s) 97, 293, 444
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 27
XspI CTAG 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.