Rroxscaffold_3G00242530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000187
Physical Location & Seq
Forward (+)
34835059 .. 34837265
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242530.1

Sequence Viewer

Length: 357 bp
ATGCGGATTGATGGACACCTTATCTCGACTTTGGGTTCGACTTCGACTAGCACGGTGAATGCGGGAGTTCGGGCTATGGTTTCTTTTGGTGGCACGAATGTTGTTTTCCGTACTATGCTTCCCAACTCAATGCTAGAGCGACTGCTCCATAATCCGGCAATGTTGCTGCATCGACCTAGGCGTCGAGCACGGATACAAGAATCTGCTGAGATGATGGCTAGATCCCAATCCGCATGCAGATTTGTTTACTCTGTGAACTCATGTAGGTTAATGTCAAACCCGATTACAGTCATCGAGGGTTATCAATTTCATGGACTTCCATCTACCAGGGTCGGTCCTGAAATTCTAACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

11.29

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
AciI CCGC 3 cut(s) 4, 62, 231
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 154
AjnI CCWGG 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 190
AlwI GGATC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 342
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AspA2I CCTAGG 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 153
BccI CCATC 3 cut(s) 5, 208, 328
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 186
BfaI CTAG 4 cut(s) 48, 134, 177, 219
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 1 cut(s) 167
BlnI CCTAGG 1 cut(s) 176
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 176, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 176, 327
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 154
BsmI GAATGC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 3 cut(s) 4, 62, 231
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 176, 327
BssMI GATC 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 55, 289
BstACI GRCGYC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 111
CviAII CATG 3 cut(s) 234, 261, 311
CviJI RGCY 3 cut(s) 74, 218, 353
CviKI_1 RGCY 3 cut(s) 74, 218, 353
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 3 cut(s) 237, 264, 314
FaiI YATR 6 cut(s) 77, 116, 150, 235, 262, 312
FatI CATG 3 cut(s) 233, 260, 310
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 4 cut(s) 48, 134, 177, 219
GluI GCNGC 1 cut(s) 167
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 237, 264, 314
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 247, 256
Hpy188III TCNNGA 2 cut(s) 25, 338
Hpy8I GTNNAC 2 cut(s) 247, 256
Hpy99I CGWCG 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 55, 289
HpyCH4V TGCA 2 cut(s) 169, 237
HpyF3I CTNAG 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 237, 264, 314
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 168, 313, 340, 351
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 178
MaeI CTAG 4 cut(s) 48, 134, 177, 219
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 305, 342
MnlI CCTC 1 cut(s) 289
MseI TTAA 1 cut(s) 269
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 328
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 237, 264, 314
NspI RCATGY 1 cut(s) 237
PaeI GCATGC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspPI GGNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 21, 178, 269
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 335
SphI GCATGC 1 cut(s) 237
Sse9I AATT 2 cut(s) 305, 342
SsiI CCGC 3 cut(s) 4, 62, 231
SspMI CTAG 4 cut(s) 48, 134, 177, 219
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 55, 289
TaqI TCGA 6 cut(s) 26, 38, 44, 172, 184, 294
TaqII GACCGA 1 cut(s) 323
TasI AATT 2 cut(s) 305, 342
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 2 cut(s) 98, 205
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 342
XceI RCATGY 1 cut(s) 237
XmaJI CCTAGG 1 cut(s) 176
XspI CTAG 4 cut(s) 48, 134, 177, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.