Rmu_sc0000218.1_g000012

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000218.1
OG0000187
Physical Location & Seq
Reverse (-)
30351 .. 42301
11951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000218.1_g000012.1.cds

Sequence Viewer

Length: 3003 bp
atgggattggaatacacttcaccagcttttgcatctgccatgtccaacatgattccatcgattaccttcatcttagctgttttgtgcaggatggaacagtttgatatttccaagcctggtacccaagccaagattggaggaactcttgctgcctttgctggtgcaacactcatgaccctctacaagggcgttgctgtaattacaatgcacaccaaaagctcctatcaaactgcagtgcctctctttgtcaacgagatgtcttttgttgatgcaatggctgctagactagcctcctctcttgctctcgctgaaggcaagaggcagattgatttgcgacctaagcagggtaagggtttgcgacaggcaaacgttttcttggtgggcaagctcctcactgctcaggatttcaaggtccagtccttcatagggatgtttcgcaacgcctggagggttaatggttcgttgcaggtggaggaagcagaaggacagagagtgctattcacactgtcggatccgtctgatcgagctcgaatttggcggggtgccccatggggatataaccacgcaccggtggctctagctttgtatgatggtatcatgccggtggagaaagtgcccctagccatggcgtcatattggataactcttctgggaataccaccagcgtttcgatctgaacgtgtcatgactatgatcgattacacgctgggggatttccaggagattgataagaatgctaagaagactgggaaactccgaattagggttgagatacctttgcataaaccattgcctttcaagcggtggtacttggtggaagatgcggtcgagtttcgctgccaattctgttatgacaagcttttcggaagatgctctgtatgtggattagtcacgcacgtgggtttgccatgctccggaccggcgttggatgaagacgacgatgaagccgagagaattgttttgggatcccagaacacagtgtcggagaggagtggtgggggctcgcagggagtttgggcggggtcaacatcagggcacgctagtggtagtaggctcaatactgatgtaagagctagggttcccaccccgtgcccaccattgatatttcggactccagatcctggtccaagtggggaaccatgtttgaatgttttatttccaaagcagaagcgacatgttgtggtacgcgaactccagggaacggcggacactccagaatgtatctcgggcaagcgtcgagccagagaagaaaacctgactatctctcctaagaaactgaaattgagcttggcagtaggtaagagaaatctcactcttgattctgaaaatctgggattgaaccctatacaggaggctactcattctgggagtatgaagcggaagagaggacgaccttctggtagtagaaataaggcgtcgtctgatggcaagcagcagacctcaaaacagggtgagagtaaggcgaaaaataagtccccaacgaagaaacaagctgtggggaaacactccaacccgaaagggacggagatagcagaacatcctgagaccccaaatggtaaaatctgttatacgaagtcaagaaaaagaaaaggaatgaaggatgatgaagatccttccgaacttccatctattccagaggaacccccttctgaaaggagaggagacaatcctgagacatcaaatgaaaaatattatataacgtattcaaggagaagaagaagaatattgaaggacgacgaaggtgctctaaatgttttaccgatttcagaaaagcctctcaaggaaaggagaccagatgatcctcataaatcagaacttagatcatgcaaaggaaaagaagtgaagacaaattctcttgctattaaggatgatgaagatgccctcaatcttttgtctattccggaagagccctttaatgaaaggagagcagatgatcctgacacgtcaaatcataaaatttgtgtaaggaaatcaaggaagagaaaaggtatgaaggcaaatagtcattctcttgagagaaatgatacggagaagaaggctttttggtcacaaattgcaaagaaggttgagtatattaaaaaaatcaaagaaaagcaggatgaggataaagcagctgtgacactacattcattcaaccgtagtttgaaaattaagggtcgtgccagtgcatcctcagggacagctgaaaggatgaaacccctcagatctgcaagtgcagcagtgaaggtaaagttatccagcattcagggttgcatacctgtacgccatccagaagttgctctttcaattgaggtttatcataatgtccgaaactgggtcaagacccaagaattcttggtcctaggacaacaaaccttgactgagttgagggataagatatactgtttaacagacaaggtgatggaaacagatggccagcataatcattcaggatatttcctcatagaagatacattctacaacgatctgagggatccttctgcaatagattatagtgaaccaatatttgattggcttagaaattcaaaagatgatgctttaaaaaaatgggagtgtattttagctggaaaaatgcaaaagcacaaaaaagcagttgtaggcgacataactggctcaaaattgcctcgtttccaagctgctgatatgcacaagacacagttttgcaacttgaaatttcaacttggtgctggatatctatactgtcaccagggtgactgcagacacacagttgtgattagagacatgcggttgcttcatccagaggatatacaaaacagggcagcttatccaatactcttattccagttgaagctacatgtacagaaatgtagagtgtgtaggatatatagagctacaaagatgactgtcaatgacaaatggactccggagaatccctgctacttttgcgataattgctacttccttcttcattatacgaaagatggttctcttcagtatcaggacttcgaagtgcatgattatcaccatgatcaaccgcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

1000

Amino Acids

112.64

Weight (kDa)

9.33

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 457
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 2 cut(s) 119, 542
AccB7I CCANNNNNTGG 1 cut(s) 1121
AccII CGCG 2 cut(s) 1188, 2998
AccIII TCCGGA 3 cut(s) 914, 1900, 2884
AciI CCGC 8 cut(s) 538, 802, 824, 1019, 1205, 1378, 2746, 2996
AclI AACGTT 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 2413
AcsI RAATTY 6 cut(s) 531, 1849, 1956, 2330, 2521, 2672
AcuI CTGAAG 2 cut(s) 330, 2936
AcvI CACGTG 1 cut(s) 898
AcyI GRCGYC 2 cut(s) 629, 1415
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 5 cut(s) 121, 809, 1185, 2262, 2820
AflIII ACRYGT 4 cut(s) 679, 1174, 1941, 2815
AgeI ACCGGT 1 cut(s) 568
AjiI CACGTC 1 cut(s) 1944
AjnI CCWGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
AjuI GAANNNNNNNTTGG 2 cut(s) 1271, 1303
AleI CACNNNNGTG 4 cut(s) 896, 1041, 2709, 2729
Alw21I GWGCWC 2 cut(s) 529, 1747
Alw26I GTCTC 5 cut(s) 1538, 1656, 1667, 1783, 2733
AlwNI CAGNNNCTG 1 cut(s) 1121
Ama87I CYCGRG 1 cut(s) 1225
Aor13HI TCCGGA 3 cut(s) 914, 1900, 2884
AoxI GGCC 1 cut(s) 2413
ApeKI GCWGC 8 cut(s) 149, 278, 837, 1432, 2111, 2216, 2636, 2780
ApoI RAATTY 6 cut(s) 531, 1849, 1956, 2330, 2521, 2672
ArsI GACNNNNNNTTYG 4 cut(s) 845, 877, 1457, 1489
AsiGI ACCGGT 1 cut(s) 568
Asp718I GGTACC 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 2341
AspS9I GGNCC 4 cut(s) 412, 917, 1124, 2338
AsuHPI GGTGA 6 cut(s) 12, 1463, 2410, 2696, 2723, 2975
AsuII TTCGAA 1 cut(s) 2967
AvaI CYCGRG 1 cut(s) 1225
AvaII GGWCC 4 cut(s) 412, 917, 1124, 2338
AvrII CCTAGG 1 cut(s) 2341
AxyI CCTNAGG 1 cut(s) 2173
BaeGI GKGCMC 4 cut(s) 547, 618, 1038, 1094
BalI TGGCCA 1 cut(s) 2415
BamHI GGATCC 3 cut(s) 511, 965, 2473
BanI GGYRCC 2 cut(s) 119, 542
BanII GRGCYC 3 cut(s) 529, 1004, 1911
BarI GAAGNNNNNNTAC 2 cut(s) 2948, 2980
BbrPI CACGTG 1 cut(s) 898
BbsI GAAGAC 3 cut(s) 749, 939, 1850
Bbv12I GWGCWC 2 cut(s) 529, 1747
BbvI GCAGC 8 cut(s) 136, 265, 824, 1444, 2123, 2228, 2623, 2792
BccI CCATC 9 cut(s) 64, 85, 584, 1418, 1633, 2274, 2395, 2405, 2936
BceAI ACGGC 1 cut(s) 1218
BcgI CGANNNNNNTGC 2 cut(s) 1724, 1758
BciT130I CCWGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
BclI TGATCA 1 cut(s) 2989
BcoDI GTCTC 5 cut(s) 1538, 1656, 1667, 1783, 2733
BfaI CTAG 7 cut(s) 282, 287, 578, 620, 1041, 1074, 2342
BfmI CTRYAG 2 cut(s) 231, 2716
BfuAI ACCTGC 1 cut(s) 457
BglII AGATCT 1 cut(s) 2204
BisI GCNGC 8 cut(s) 150, 279, 838, 1433, 2112, 2217, 2637, 2781
BlnI CCTAGG 1 cut(s) 2341
BlsI GCNGC 8 cut(s) 151, 280, 839, 1434, 2113, 2218, 2638, 2782
Bme1390I CCNGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
Bme18I GGWCC 4 cut(s) 412, 917, 1124, 2338
BmeT110I CYCGRG 1 cut(s) 1225
BmgBI CACGTC 1 cut(s) 1944
BmgT120I GGNCC 4 cut(s) 412, 917, 1124, 2338
BmiI GGNNCC 8 cut(s) 121, 513, 544, 967, 1080, 1137, 1641, 2475
BmrFI CCNGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
BmrI ACTGGG 2 cut(s) 756, 2323
BmsI GCATC 7 cut(s) 41, 259, 811, 860, 1867, 2177, 2524
BmuI ACTGGG 2 cut(s) 756, 2323
BpiI GAAGAC 3 cut(s) 749, 939, 1850
BpmI CTGGAG 4 cut(s) 466, 1098, 1178, 1197
Bpu10I CCTNAGC 2 cut(s) 339, 399
Bpu14I TTCGAA 1 cut(s) 2967
BpuEI CTTGAG 2 cut(s) 1763, 2033
Bsa29I ATCGAT 2 cut(s) 59, 696
BsaAI YACGTR 1 cut(s) 898
BsaBI GATNNNNATC 1 cut(s) 1608
BsaHI GRCGYC 2 cut(s) 629, 1415
BsaI GGTCTC 2 cut(s) 1538, 1783
BsaJI CCNNGG 5 cut(s) 548, 624, 1195, 2341, 2707
BsaWI WCCGGW 4 cut(s) 568, 914, 1900, 2884
BsaXI ACNNNNNCTCC 4 cut(s) 1176, 1206, 1249, 1279
Bse118I RCCGGY 3 cut(s) 568, 601, 919
Bse1I ACTGG 6 cut(s) 415, 751, 2163, 2318, 2614, 2803
Bse21I CCTNAGG 1 cut(s) 2173
Bse3DI GCAATG 2 cut(s) 279, 788
Bse8I GATNNNNATC 1 cut(s) 1608
BseAI TCCGGA 3 cut(s) 914, 1900, 2884
BseBI CCWGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
BseCI ATCGAT 2 cut(s) 59, 696
BseDI CCNNGG 5 cut(s) 548, 624, 1195, 2341, 2707
BseJI GATNNNNATC 1 cut(s) 1608
BseMI GCAATG 2 cut(s) 279, 788
BseMII CTCAG 7 cut(s) 413, 1533, 1662, 2187, 2215, 2352, 2459
BseNI ACTGG 6 cut(s) 415, 751, 2163, 2318, 2614, 2803
BseRI GAGGAG 4 cut(s) 283, 380, 1003, 1674
BseSI GKGCMC 4 cut(s) 547, 618, 1038, 1094
BseXI GCAGC 8 cut(s) 136, 265, 824, 1444, 2123, 2228, 2623, 2792
BseYI CCCAGC 1 cut(s) 706
BsgI GTGCAG 2 cut(s) 106, 2235
Bsh1236I CGCG 2 cut(s) 1188, 2998
Bsh1285I CGRYCG 1 cut(s) 828
BshFI GGCC 1 cut(s) 2415
BshNI GGYRCC 2 cut(s) 119, 542
BshTI ACCGGT 1 cut(s) 568
BshVI ATCGAT 2 cut(s) 59, 696
BsiEI CGRYCG 1 cut(s) 828
BsiHKAI GWGCWC 2 cut(s) 529, 1747
BsiHKCI CYCGRG 1 cut(s) 1225
BsiSI CCGG 6 cut(s) 569, 602, 915, 920, 1901, 2885
BslFI GGGAC 3 cut(s) 1459, 1534, 2191
BsmAI GTCTC 5 cut(s) 1538, 1656, 1667, 1783, 2733
BsmFI GGGAC 3 cut(s) 1459, 1534, 2191
BsmI GAATGC 2 cut(s) 739, 2241
BsnI GGCC 1 cut(s) 2415
Bso31I GGTCTC 2 cut(s) 1538, 1783
BsoBI CYCGRG 1 cut(s) 1225
Bsp119I TTCGAA 1 cut(s) 2967
Bsp1286I GDGCHC 8 cut(s) 529, 547, 618, 1004, 1038, 1094, 1747, 1911
Bsp13I TCCGGA 3 cut(s) 914, 1900, 2884
Bsp1407I TGTACA 1 cut(s) 2818
Bsp19I CCATGG 2 cut(s) 548, 624
BspACI CCGC 8 cut(s) 538, 802, 824, 1019, 1205, 1378, 2746, 2996
BspANI GGCC 1 cut(s) 2415
BspCNI CTCAG 7 cut(s) 412, 1534, 1663, 2186, 2214, 2353, 2460
BspDI ATCGAT 2 cut(s) 59, 696
BspEI TCCGGA 3 cut(s) 914, 1900, 2884
BspFNI CGCG 2 cut(s) 1188, 2998
BspHI TCATGA 2 cut(s) 171, 684
BspLI GGNNCC 8 cut(s) 121, 513, 544, 967, 1080, 1137, 1641, 2475
BspMAI CTGCAG 2 cut(s) 235, 2720
BspMI ACCTGC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 1899
BspT104I TTCGAA 1 cut(s) 2967
BspT107I GGYRCC 2 cut(s) 119, 542
BspTNI GGTCTC 2 cut(s) 1538, 1783
BsrDI GCAATG 2 cut(s) 279, 788
BsrFI RCCGGY 3 cut(s) 568, 601, 919
BsrGI TGTACA 1 cut(s) 2818
BsrI ACTGG 6 cut(s) 415, 751, 2163, 2318, 2614, 2803
BssAI RCCGGY 3 cut(s) 568, 601, 919
BssECI CCNNGG 5 cut(s) 548, 624, 1195, 2341, 2707
BssNI GRCGYC 2 cut(s) 629, 1415
BssT1I CCWWGG 3 cut(s) 548, 624, 2341
Bst2UI CCWGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
Bst4CI ACNGT 9 cut(s) 99, 507, 979, 2138, 2384, 2658, 2702, 2728, 2866
Bst6I CTCTTC 5 cut(s) 651, 1376, 1899, 1973, 2955
BstACI GRCGYC 2 cut(s) 629, 1415
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 2818
BstBAI YACGTR 1 cut(s) 898
BstBI TTCGAA 1 cut(s) 2967
BstC8I GCNNGC 6 cut(s) 386, 1004, 1038, 1232, 1430, 2417
BstDSI CCRYGG 2 cut(s) 548, 624
BstENI CCTNNNNNAGG 1 cut(s) 182
BstFNI CGCG 2 cut(s) 1188, 2998
BstMAI GTCTC 5 cut(s) 1538, 1656, 1667, 1783, 2733
BstMCI CGRYCG 1 cut(s) 828
BstMWI GCNNNNNNNGC 9 cut(s) 155, 278, 287, 340, 572, 799, 2216, 2904, 2913
BstNI CCWGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
BstNSI RCATGY 3 cut(s) 1178, 2746, 2819
BstSCI CCNGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
BstSFI CTRYAG 2 cut(s) 231, 2716
BstSLI GKGCMC 4 cut(s) 547, 618, 1038, 1094
BstUI CGCG 2 cut(s) 1188, 2998
BstV1I GCAGC 8 cut(s) 136, 265, 824, 1444, 2123, 2228, 2623, 2792
BstV2I GAAGAC 3 cut(s) 749, 939, 1850
BstX2I RGATCY 6 cut(s) 511, 965, 1117, 1609, 2204, 2473
BstYI RGATCY 6 cut(s) 511, 965, 1117, 1609, 2204, 2473
Bsu15I ATCGAT 2 cut(s) 59, 696
Bsu36I CCTNAGG 1 cut(s) 2173
BsuRI GGCC 1 cut(s) 2415
BsuTUI ATCGAT 2 cut(s) 59, 696
BtgI CCRYGG 2 cut(s) 548, 624
BtrI CACGTC 1 cut(s) 1944
BtsI GCAGTG 3 cut(s) 240, 393, 2226
BtsIMutI CAGTG 6 cut(s) 240, 393, 503, 984, 2170, 2226
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 6 cut(s) 386, 1004, 1038, 1232, 1430, 2417
CaiI CAGNNNCTG 1 cut(s) 1121
CciI TCATGA 2 cut(s) 171, 684
Cfr10I RCCGGY 3 cut(s) 568, 601, 919
Cfr13I GGNCC 4 cut(s) 412, 917, 1124, 2338
ClaI ATCGAT 2 cut(s) 59, 696
CpoI CGGWCCG 1 cut(s) 917
CseI GACGC 3 cut(s) 618, 1223, 1404
Csp6I GTAC 5 cut(s) 120, 808, 1184, 2261, 2819
CspAI ACCGGT 1 cut(s) 568
CspI CGGWCCG 1 cut(s) 917
CviQI GTAC 5 cut(s) 120, 808, 1184, 2261, 2819
DraI TTTAAA 1 cut(s) 2541
DraIII CACNNNGTG 1 cut(s) 1089
EaeI YGGCCR 1 cut(s) 2413
Eam1104I CTCTTC 5 cut(s) 651, 1376, 1899, 1973, 2955
EarI CTCTTC 5 cut(s) 651, 1376, 1899, 1973, 2955
EciI GGCGGA 1 cut(s) 1220
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 3 cut(s) 548, 624, 2341
Eco24I GRGCYC 3 cut(s) 529, 1004, 1911
Eco31I GGTCTC 2 cut(s) 1538, 1783
Eco32I GATATC 1 cut(s) 2693
Eco47I GGWCC 4 cut(s) 412, 917, 1124, 2338
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 330, 2936
Eco72I CACGTG 1 cut(s) 898
Eco81I CCTNAGG 1 cut(s) 2173
Eco88I CYCGRG 1 cut(s) 1225
EcoICRI GAGCTC 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 2330
EcoRII CCWGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
EcoRV GATATC 1 cut(s) 2693
EcoT14I CCWWGG 3 cut(s) 548, 624, 2341
EcoT38I GRGCYC 3 cut(s) 529, 1004, 1911
ErhI CCWWGG 3 cut(s) 548, 624, 2341
FalI AAGNNNNNCTT 2 cut(s) 2265, 2297
FaqI GGGAC 3 cut(s) 1459, 1534, 2191
FauI CCCGC 2 cut(s) 531, 1012
FbaI TGATCA 1 cut(s) 2989
Fnu4HI GCNGC 8 cut(s) 150, 279, 838, 1433, 2112, 2217, 2637, 2781
FriOI GRGCYC 3 cut(s) 529, 1004, 1911
Fsp4HI GCNGC 8 cut(s) 150, 279, 838, 1433, 2112, 2217, 2637, 2781
FspBI CTAG 7 cut(s) 282, 287, 578, 620, 1041, 1074, 2342
GluI GCNGC 8 cut(s) 150, 279, 838, 1433, 2112, 2217, 2637, 2781
GsaI CCCAGC 1 cut(s) 710
GsuI CTGGAG 4 cut(s) 466, 1098, 1178, 1197
HaeIII GGCC 1 cut(s) 2415
HapII CCGG 6 cut(s) 569, 602, 915, 920, 1901, 2885
HgaI GACGC 3 cut(s) 618, 1223, 1404
Hin1I GRCGYC 2 cut(s) 629, 1415
HincII GTYRAC 2 cut(s) 250, 1026
HindII GTYRAC 2 cut(s) 250, 1026
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 52, 1111, 1319, 2881, 2890
HpaII CCGG 6 cut(s) 569, 602, 915, 920, 1901, 2885
HphI GGTGA 6 cut(s) 12, 1463, 2410, 2696, 2723, 2975
Hpy166II GTNNAC 3 cut(s) 250, 1026, 2498
Hpy8I GTNNAC 3 cut(s) 250, 1026, 2498
Hpy99I CGWCG 4 cut(s) 941, 1239, 1420, 1739
HpyCH4III ACNGT 9 cut(s) 99, 507, 979, 2138, 2384, 2658, 2702, 2728, 2866
HpyCH4IV ACGT 5 cut(s) 369, 679, 897, 1700, 1943
HpyF10VI GCNNNNNNNGC 9 cut(s) 155, 278, 287, 340, 572, 799, 2216, 2904, 2913
HpySE526I ACGT 5 cut(s) 369, 679, 897, 1700, 1943
Hsp92I GRCGYC 2 cut(s) 629, 1415
Kpn2I TCCGGA 3 cut(s) 914, 1900, 2884
KpnI GGTACC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 2989
LguI GCTCTTC 1 cut(s) 1899
LmnI GCTCC 3 cut(s) 224, 393, 917
Lsp1109I GCAGC 8 cut(s) 136, 265, 824, 1444, 2123, 2228, 2623, 2792
LweI GCATC 7 cut(s) 41, 259, 811, 860, 1867, 2177, 2524
MaeI CTAG 7 cut(s) 282, 287, 578, 620, 1041, 1074, 2342
MaeII ACGT 5 cut(s) 369, 679, 897, 1700, 1943
MaeIII GTNAC 5 cut(s) 889, 2046, 2116, 2702, 2711
MfeI CAATTG 1 cut(s) 2286
MflI RGATCY 6 cut(s) 511, 965, 1117, 1609, 2204, 2473
MhlI GDGCHC 8 cut(s) 529, 547, 618, 1004, 1038, 1094, 1747, 1911
MlsI TGGCCA 1 cut(s) 2415
MluNI TGGCCA 1 cut(s) 2415
MlyI GAGTC 2 cut(s) 1105, 2875
MmeI TCCRAC 5 cut(s) 69, 489, 906, 963, 1533
Mox20I TGGCCA 1 cut(s) 2415
MroI TCCGGA 3 cut(s) 914, 1900, 2884
MscI TGGCCA 1 cut(s) 2415
MseI TTAA 7 cut(s) 453, 1863, 1914, 2076, 2151, 2387, 2540
MslI CAYNNNNRTG 7 cut(s) 428, 602, 689, 896, 1041, 2709, 2729
Msp20I TGGCCA 1 cut(s) 2415
MspA1I CMGCKG 2 cut(s) 2114, 2183
MspI CCGG 6 cut(s) 569, 602, 915, 920, 1901, 2885
MspR9I CCNGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
MunI CAATTG 1 cut(s) 2286
Mva1269I GAATGC 2 cut(s) 739, 2241
MvaI CCWGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
MvnI CGCG 2 cut(s) 1188, 2998
MwoI GCNNNNNNNGC 9 cut(s) 155, 278, 287, 340, 572, 799, 2216, 2904, 2913
NcoI CCATGG 2 cut(s) 548, 624
NlaIV GGNNCC 8 cut(s) 121, 513, 544, 967, 1080, 1137, 1641, 2475
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 5 cut(s) 889, 2046, 2116, 2702, 2711
NspI RCATGY 3 cut(s) 1178, 2746, 2819
NspV TTCGAA 1 cut(s) 2967
OliI CACNNNNGTG 4 cut(s) 896, 1041, 2709, 2729
PagI TCATGA 2 cut(s) 171, 684
PaqCI CACCTGC 1 cut(s) 457
PciI ACATGT 2 cut(s) 1174, 2815
PciSI GCTCTTC 1 cut(s) 1899
PcsI WCGNNNNNNNCGW 2 cut(s) 676, 945
PctI GAATGC 2 cut(s) 739, 2241
PfeI GAWTC 3 cut(s) 52, 1319, 2890
PflMI CCANNNNNTGG 1 cut(s) 1121
PfoI TCCNGGA 1 cut(s) 717
PinAI ACCGGT 1 cut(s) 568
PkrI GCNGC 8 cut(s) 151, 280, 839, 1434, 2113, 2218, 2638, 2782
PleI GAGTC 2 cut(s) 1105, 2875
PmaCI CACGTG 1 cut(s) 898
PmlI CACGTG 1 cut(s) 898
PpsI GAGTC 2 cut(s) 1105, 2875
Ppu21I YACGTR 1 cut(s) 898
PscI ACATGT 2 cut(s) 1174, 2815
Psp124BI GAGCTC 1 cut(s) 529
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
PspCI CACGTG 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
PspN4I GGNNCC 8 cut(s) 121, 513, 544, 967, 1080, 1137, 1641, 2475
PspPI GGNCC 4 cut(s) 412, 917, 1124, 2338
PstI CTGCAG 2 cut(s) 235, 2720
PstNI CAGNNNCTG 1 cut(s) 1121
PsuI RGATCY 6 cut(s) 511, 965, 1117, 1609, 2204, 2473
PvuII CAGCTG 2 cut(s) 2114, 2183
RsaI GTAC 5 cut(s) 121, 809, 1185, 2262, 2820
RsaNI GTAC 5 cut(s) 120, 808, 1184, 2261, 2819
RseI CAYNNNNRTG 7 cut(s) 428, 602, 689, 896, 1041, 2709, 2729
Rsr2I CGGWCCG 1 cut(s) 917
RsrII CGGWCCG 1 cut(s) 917
SacI GAGCTC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 1899
SaqAI TTAA 7 cut(s) 453, 1863, 1914, 2076, 2151, 2387, 2540
SatI GCNGC 8 cut(s) 150, 279, 838, 1433, 2112, 2217, 2637, 2781
Sau96I GGNCC 4 cut(s) 412, 917, 1124, 2338
SchI GAGTC 2 cut(s) 1105, 2875
ScrFI CCNGG 6 cut(s) 117, 445, 719, 1122, 1196, 2708
SduI GDGCHC 8 cut(s) 529, 547, 618, 1004, 1038, 1094, 1747, 1911
SfaNI GCATC 7 cut(s) 41, 259, 811, 860, 1867, 2177, 2524
SfcI CTRYAG 2 cut(s) 231, 2716
SfuI TTCGAA 1 cut(s) 2967
SgrAI CRCCGGYG 1 cut(s) 568
SinI GGWCC 4 cut(s) 412, 917, 1124, 2338
SmiMI CAYNNNNRTG 7 cut(s) 428, 602, 689, 896, 1041, 2709, 2729
SmlI CTYRAG 2 cut(s) 1778, 2012
SmoI CTYRAG 2 cut(s) 1778, 2012
SsiI CCGC 8 cut(s) 538, 802, 824, 1019, 1205, 1378, 2746, 2996
SspI AATATT 3 cut(s) 1691, 1725, 2505
SspMI CTAG 7 cut(s) 282, 287, 578, 620, 1041, 1074, 2342
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 6 cut(s) 115, 443, 717, 1120, 1194, 2706
StyI CCWWGG 3 cut(s) 548, 624, 2341
TaaI ACNGT 9 cut(s) 99, 507, 979, 2138, 2384, 2658, 2702, 2728, 2866
TaiI ACGT 5 cut(s) 372, 682, 900, 1703, 1946
TaqI TCGA 8 cut(s) 59, 523, 529, 670, 696, 828, 1237, 2967
TatI WGTACW 1 cut(s) 2818
TfiI GAWTC 3 cut(s) 52, 1319, 2890
Tru1I TTAA 7 cut(s) 453, 1863, 1914, 2076, 2151, 2387, 2540
Tru9I TTAA 7 cut(s) 453, 1863, 1914, 2076, 2151, 2387, 2540
TscAI CASTG 6 cut(s) 240, 400, 510, 984, 2170, 2226
TseFI GTSAC 5 cut(s) 889, 2046, 2116, 2702, 2711
TseI GCWGC 8 cut(s) 149, 278, 837, 1432, 2111, 2216, 2636, 2780
Tsp45I GTSAC 5 cut(s) 889, 2046, 2116, 2702, 2711
TspGWI ACGGA 3 cut(s) 504, 1538, 2042
TspRI CASTG 6 cut(s) 240, 400, 510, 984, 2170, 2226
Van91I CCANNNNNTGG 1 cut(s) 1121
VpaK11BI GGWCC 4 cut(s) 412, 917, 1124, 2338
XagI CCTNNNNNAGG 1 cut(s) 182
XapI RAATTY 6 cut(s) 531, 1849, 1956, 2330, 2521, 2672
XceI RCATGY 3 cut(s) 1178, 2746, 2819
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 2508
XmaJI CCTAGG 1 cut(s) 2341
XspI CTAG 7 cut(s) 282, 287, 578, 620, 1041, 1074, 2342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.