Rmu_sc0026820.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026820.1
OG0000187
Physical Location & Seq
Forward (+)
1 .. 573
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026820.1_g000001.1.cds

Sequence Viewer

Length: 573 bp
cgtctgtcgcaaggcaagggattgcaacaatctaaaatttttatggttgggaaacccctcattgccaaggagttcaaggtctgctccttccttggtatgtttcgatctgcagggagggtcaatcggacgttgcaagttgaagagactgaaggaggtagggttttgtttactttttcggatcctgcagactgggctagggtttggaggagtgcgccaagggggtttaaccgtgctcctgtggcttgggctgaatatgatggggttattccgattgagaaggtatttccggtgaagtcatcttattggatcactttgcaaggtattccacctgctttcagatccgaaagggtgatgacgatgattgggtataccttgggggattttcaggagattgataagcagggaaagaaggttggtaagtatcatatccaggttgagattcctttgattcagccaatatcttttcagcgatggtattgggtggaggatacggtcaagttaagttgtttggaaggtgtggggtgtgtggcttggtcacacacattggcttgccgtgctcggggatggcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

190

Amino Acids

21.7

Weight (kDa)

9.69

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 368
AclWI GGATC 4 cut(s) 173, 186, 314, 333
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 2 cut(s) 76, 140
AjnI CCWGG 1 cut(s) 429
Alw21I GWGCWC 2 cut(s) 235, 559
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 4 cut(s) 173, 186, 314, 333
Ama87I CYCGRG 1 cut(s) 558
ApoI RAATTY 1 cut(s) 36
AspLEI GCGC 2 cut(s) 214, 570
AsuHPI GGTGA 2 cut(s) 301, 361
AvaI CYCGRG 1 cut(s) 558
BamHI GGATCC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 235, 559
BccI CCATC 3 cut(s) 251, 465, 558
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 108, 183
BfoI RGCGCY 1 cut(s) 571
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 558
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 66, 91, 215, 372
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 66, 91, 215, 372
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 235, 559
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 235, 559
Bsp143I GATC 4 cut(s) 104, 178, 306, 338
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 2 cut(s) 112, 187
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 4 cut(s) 173, 186, 314, 333
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 66, 91, 215, 372
BssMI GATC 4 cut(s) 104, 178, 306, 338
BssNAI GTATAC 1 cut(s) 369
BssT1I CCWWGG 4 cut(s) 66, 91, 215, 372
Bst1107I GTATAC 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 230, 493
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 550
BstF5I GGATG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 2 cut(s) 214, 570
BstKTI GATC 4 cut(s) 107, 181, 309, 341
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 104, 178, 306, 338
BstMWI GCNNNNNNNGC 3 cut(s) 191, 239, 554
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 2 cut(s) 108, 183
BstX2I RGATCY 2 cut(s) 178, 338
BstYI RGATCY 2 cut(s) 178, 338
BstZ17I GTATAC 1 cut(s) 369
BsuI GTATCC 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 1 cut(s) 569
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 2 cut(s) 214, 570
CviJI RGCY 6 cut(s) 194, 242, 248, 454, 530, 548
CviKI_1 RGCY 6 cut(s) 194, 242, 248, 454, 530, 548
DpnI GATC 4 cut(s) 106, 180, 308, 340
DpnII GATC 4 cut(s) 104, 178, 306, 338
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 4 cut(s) 66, 91, 215, 372
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 4 cut(s) 66, 91, 215, 372
ErhI CCWWGG 4 cut(s) 66, 91, 215, 372
FaiI YATR 5 cut(s) 44, 98, 255, 369, 426
FblI GTMKAC 1 cut(s) 368
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 213, 569
HaeII RGCGCY 1 cut(s) 571
HapII CCGG 1 cut(s) 287
HhaI GCGC 2 cut(s) 214, 570
Hin6I GCGC 2 cut(s) 212, 568
HinP1I GCGC 2 cut(s) 212, 568
HinfI GANTC 2 cut(s) 439, 448
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 301, 361
Hpy166II GTNNAC 2 cut(s) 168, 369
Hpy188I TCNGA 5 cut(s) 126, 178, 270, 338, 343
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 2 cut(s) 168, 369
HpyAV CCTTC 5 cut(s) 97, 143, 271, 403, 506
HpyCH4III ACNGT 2 cut(s) 230, 493
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 25, 110, 133, 185, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 239, 554
HpySE526I ACGT 1 cut(s) 128
HspAI GCGC 2 cut(s) 212, 568
Kzo9I GATC 4 cut(s) 104, 178, 306, 338
LmnI GCTCC 2 cut(s) 89, 238
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 534
MalI GATC 4 cut(s) 106, 180, 308, 340
MboI GATC 4 cut(s) 104, 178, 306, 338
MboII GAAGA 1 cut(s) 152
MflI RGATCY 2 cut(s) 178, 338
MhlI GDGCHC 2 cut(s) 235, 559
MluCI AATT 1 cut(s) 36
MnlI CCTC 5 cut(s) 68, 108, 146, 198, 478
MseI TTAA 2 cut(s) 225, 500
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 191, 239, 554
NdeII GATC 4 cut(s) 104, 178, 306, 338
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 534
PaqCI CACCTGC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 439, 448
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 180
PstI CTGCAG 2 cut(s) 112, 187
PsuI RGATCY 2 cut(s) 178, 338
SaqAI TTAA 2 cut(s) 225, 500
Sau3AI GATC 4 cut(s) 104, 178, 306, 338
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 235, 559
SfcI CTRYAG 2 cut(s) 108, 183
Sse9I AATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 4 cut(s) 66, 91, 215, 372
TaaI ACNGT 2 cut(s) 230, 493
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 36
TfiI GAWTC 2 cut(s) 439, 448
Tru1I TTAA 2 cut(s) 225, 500
Tru9I TTAA 2 cut(s) 225, 500
TseFI GTSAC 1 cut(s) 534
Tsp45I GTSAC 1 cut(s) 534
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.