Rmu_sc0000145.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000145.1
OG0000187
Physical Location & Seq
Forward (+)
61517 .. 62439
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000145.1_g000010.1.cds

Sequence Viewer

Length: 831 bp
atgccgctctctctttatctctctagggttagggttttcacgctctgttcaagtttcaactgcctcatcatgagttccgttgatgccatggctgcccaattcgcctcctctcttgcattggtagagggaaagaagaaggtagatctccgtccatcgcaaggcaagggcttgcgacaatctgaagtttttatggttggaaaactccttactgctagggagttcaaggtccgttccttcctaggtatgtttcgatatgcctggagggtcaatgggacgctgcaagttgaagaagctgaaggaggtagagttttgttcactttttcagatcctaccgaccgagctaggttttggaggggcgcaccatggggttttaaccgtgctcctgtagctttggctgagtatgatggggttatgctaattgagaaggtgccattggtgaaatcctcctattggatcacgctgcagggtattccacctgcgtttagatctgaaagggtgatgacgatgatcggatatacgttgggagactttcaggagattgataagcaggagaagaaggttggcaagtaccggattagggttgagattcctcggatcaggccattgtcctttcaacattggtattgggtggaggacatggtggagtttctatgcaaattcaggtatgataagttgtttgggaggtggccgccgccggtggcgcagggtaatgccatgcatgtcgggatcggcggcttgactacggggtcgggttctgaaggttgcagccatgaagctgcgttcaatcctcgggtttctttcaatgggcacagtttgatcttcaagacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

276

Amino Acids

31.33

Weight (kDa)

9.69

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
AasI GACNNNNNNGTC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 7
AciI CCGC 4 cut(s) 5, 689, 692, 732
AclWI GGATC 4 cut(s) 320, 461, 602, 734
AcoI YGGCCR 1 cut(s) 686
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 3 cut(s) 201, 315, 777
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 158, 450, 577
AgsI TTSAA 8 cut(s) 51, 58, 223, 287, 614, 784, 802, 823
AjnI CCWGG 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 4 cut(s) 293, 341, 389, 776
AluI AGCT 4 cut(s) 293, 341, 389, 776
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 4 cut(s) 320, 461, 602, 734
Ama87I CYCGRG 1 cut(s) 789
AoxI GGCC 2 cut(s) 599, 686
ApeKI GCWGC 5 cut(s) 92, 277, 460, 765, 776
ApoI RAATTY 1 cut(s) 656
AspA2I CCTAGG 1 cut(s) 238
AspLEI GCGC 2 cut(s) 359, 703
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 448, 508
AvaI CYCGRG 1 cut(s) 789
AvaII GGWCC 1 cut(s) 226
AvrII CCTAGG 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 5 cut(s) 79, 264, 447, 763, 777
BccI CCATC 2 cut(s) 160, 398
BciT130I CCWGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 4 cut(s) 24, 213, 239, 342
BfmI CTRYAG 2 cut(s) 384, 461
BfuAI ACCTGC 1 cut(s) 484
BglII AGATCT 2 cut(s) 142, 485
BisI GCNGC 9 cut(s) 5, 93, 278, 461, 689, 692, 733, 766, 777
BlnI CCTAGG 1 cut(s) 238
BlsI GCNGC 9 cut(s) 6, 94, 279, 462, 690, 693, 734, 767, 778
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 789
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 280
BsaJI CCNNGG 5 cut(s) 87, 238, 362, 590, 788
BsaWI WCCGGW 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 450, 577
Bse118I RCCGGY 1 cut(s) 694
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 5 cut(s) 87, 238, 362, 590, 788
BseLI CCNNNNNNNGG 3 cut(s) 158, 450, 577
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 5 cut(s) 79, 264, 447, 763, 777
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 601, 688
BshNI GGYRCC 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 789
BsiSI CCGG 2 cut(s) 571, 695
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 158, 450, 577
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 2 cut(s) 601, 688
BsoBI CYCGRG 1 cut(s) 789
Bsp1286I GDGCHC 2 cut(s) 382, 810
Bsp143I GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
Bsp19I CCATGG 2 cut(s) 87, 362
BspACI CCGC 4 cut(s) 5, 689, 692, 732
BspANI GGCC 2 cut(s) 601, 688
BspCNI CTCAG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 465
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 4 cut(s) 320, 461, 602, 734
BspT107I GGYRCC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 5 cut(s) 87, 238, 362, 590, 788
BssMI GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
BssT1I CCWWGG 3 cut(s) 87, 238, 362
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 377, 812
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 2 cut(s) 87, 362
BstHHI GCGC 2 cut(s) 359, 703
BstKTI GATC 8 cut(s) 145, 328, 456, 488, 510, 597, 729, 819
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 92, 101, 386, 700
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 2 cut(s) 384, 461
BstSLI GKGCMC 1 cut(s) 810
BstV1I GCAGC 5 cut(s) 79, 264, 447, 763, 777
BstX2I RGATCY 3 cut(s) 142, 325, 485
BstYI RGATCY 3 cut(s) 142, 325, 485
BsuRI GGCC 2 cut(s) 601, 688
BtgI CCRYGG 2 cut(s) 87, 362
BtgZI GCGATG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 170
CciI TCATGA 1 cut(s) 69
CfoI GCGC 2 cut(s) 359, 703
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 568
CviAII CATG 7 cut(s) 70, 88, 363, 637, 715, 719, 770
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 1 cut(s) 396
DpnI GATC 8 cut(s) 144, 327, 455, 487, 509, 596, 728, 818
DpnII GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
DrdI GACNNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 686
Eco130I CCWWGG 3 cut(s) 87, 238, 362
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 201, 315, 777
Eco88I CYCGRG 1 cut(s) 789
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 3 cut(s) 87, 238, 362
EcoT22I ATGCAT 1 cut(s) 720
ErhI CCWWGG 3 cut(s) 87, 238, 362
FaeI CATG 7 cut(s) 73, 91, 366, 640, 718, 722, 773
FaqI GGGAC 1 cut(s) 286
FatI CATG 7 cut(s) 69, 87, 362, 636, 714, 718, 769
Fnu4HI GCNGC 9 cut(s) 5, 93, 278, 461, 689, 692, 733, 766, 777
Fsp4HI GCNGC 9 cut(s) 5, 93, 278, 461, 689, 692, 733, 766, 777
FspBI CTAG 4 cut(s) 24, 213, 239, 342
GlaI GCGC 2 cut(s) 358, 702
GluI GCNGC 9 cut(s) 5, 93, 278, 461, 689, 692, 733, 766, 777
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 2 cut(s) 601, 688
HapII CCGG 2 cut(s) 571, 695
HgaI GACGC 1 cut(s) 283
HhaI GCGC 2 cut(s) 359, 703
Hin1II CATG 7 cut(s) 73, 91, 366, 640, 718, 722, 773
Hin6I GCGC 2 cut(s) 357, 701
HinP1I GCGC 2 cut(s) 357, 701
HinfI GANTC 1 cut(s) 586
HpaII CCGG 2 cut(s) 571, 695
HphI GGTGA 2 cut(s) 448, 508
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 6 cut(s) 181, 325, 490, 512, 594, 757
Hpy188III TCNNGA 4 cut(s) 70, 533, 724, 823
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 6 cut(s) 130, 244, 290, 418, 550, 752
HpyCH4III ACNGT 2 cut(s) 377, 812
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 6 cut(s) 116, 280, 463, 654, 718, 765
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 101, 386, 700
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 7 cut(s) 73, 91, 366, 640, 718, 722, 773
HspAI GCGC 2 cut(s) 357, 701
Kzo9I GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 5 cut(s) 79, 264, 447, 763, 777
LweI GCATC 1 cut(s) 73
MaeI CTAG 4 cut(s) 24, 213, 239, 342
MaeII ACGT 1 cut(s) 518
MalI GATC 8 cut(s) 144, 327, 455, 487, 509, 596, 728, 818
MbiI CCGCTC 1 cut(s) 7
MboI GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
MboII GAAGA 4 cut(s) 145, 299, 565, 811
MflI RGATCY 3 cut(s) 142, 325, 485
MhlI GDGCHC 2 cut(s) 382, 810
MluCI AATT 3 cut(s) 98, 417, 656
MmeI TCCRAC 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 720
MseI TTAA 2 cut(s) 372, 829
MspI CCGG 2 cut(s) 571, 695
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 92, 101, 386, 700
NcoI CCATGG 2 cut(s) 87, 362
NdeII GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
NlaIII CATG 7 cut(s) 73, 91, 366, 640, 718, 722, 773
NlaIV GGNNCC 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 720
NspI RCATGY 1 cut(s) 722
PagI TCATGA 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 9 cut(s) 6, 94, 279, 462, 690, 693, 734, 767, 778
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 465
PsuI RGATCY 3 cut(s) 142, 325, 485
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 372, 829
SatI GCNGC 9 cut(s) 5, 93, 278, 461, 689, 692, 733, 766, 777
Sau3AI GATC 8 cut(s) 142, 325, 453, 485, 507, 594, 726, 816
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 2 cut(s) 382, 810
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 2 cut(s) 384, 461
SgrAI CRCCGGYG 1 cut(s) 694
SinI GGWCC 1 cut(s) 226
Sse9I AATT 3 cut(s) 98, 417, 656
SsiI CCGC 4 cut(s) 5, 689, 692, 732
SspMI CTAG 4 cut(s) 24, 213, 239, 342
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 3 cut(s) 87, 238, 362
TaaI ACNGT 2 cut(s) 377, 812
TaiI ACGT 1 cut(s) 521
TaqI TCGA 1 cut(s) 250
TaqII GACCGA 1 cut(s) 351
TasI AATT 3 cut(s) 98, 417, 656
TauI GCSGC 4 cut(s) 7, 691, 694, 735
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 2 cut(s) 372, 829
Tru9I TTAA 2 cut(s) 372, 829
TseI GCWGC 5 cut(s) 92, 277, 460, 765, 776
TspDTI ATGAA 1 cut(s) 786
TspGWI ACGGA 3 cut(s) 67, 137, 218
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 656
XceI RCATGY 1 cut(s) 722
XmaJI CCTAGG 1 cut(s) 238
XspI CTAG 4 cut(s) 24, 213, 239, 342
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.