Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

38385151 .. 38385486

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG193900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAACTCAAGACCATCCCATCAATGCCAGAAGCTCTAATGGCCGAGATCAACACTGCAATTTGCAATCTTGAAGACGCACGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCAAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGCCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.55

Weight (kDa)

5.73

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	74, 132, 253
AluBI	AGCT	4 cut(s)	35, 150, 229, 304
AluI	AGCT	4 cut(s)	35, 150, 229, 304
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	209, 218
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	196, 205
BccI	CCATC	2 cut(s)	23, 28
BceAI	ACGGC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	175
BisI	GCNGC	2 cut(s)	210, 219
BlsI	GCNGC	2 cut(s)	211, 220
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
Bpu14I	TTCGAA	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	196, 205
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	48, 184, 280
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	48, 184, 280
BssT1I	CCWWGG	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	130, 246
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	82, 202
BstDEI	CTNAG	2 cut(s)	162, 330
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	51, 187, 283
BstMBI	GATC	3 cut(s)	48, 184, 280
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 179, 188, 197, 206, 215, 218, 310
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	196, 205
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	82, 202
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	86
CviJI	RGCY	9 cut(s)	35, 44, 150, 191, 204, 218, 229, 239, 304
CviKI_1	RGCY	9 cut(s)	35, 44, 150, 191, 204, 218, 229, 239, 304
DdeI	CTNAG	2 cut(s)	162, 330
DpnI	GATC	3 cut(s)	50, 186, 282
DpnII	GATC	3 cut(s)	48, 184, 280
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	130, 246
EarI	CTCTTC	2 cut(s)	130, 246
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	210, 219
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	210, 219
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	210, 219
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	3 cut(s)	10, 71, 98
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	59, 66
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 179, 188, 197, 206, 215, 218, 310
HpyF3I	CTNAG	2 cut(s)	162, 330
HpySE526I	ACGT	1 cut(s)	107
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	48, 184, 280
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	42, 173, 186, 188, 207, 291
Lsp1109I	GCAGC	2 cut(s)	196, 205
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	107
MalI	GATC	3 cut(s)	50, 186, 282
MboI	GATC	3 cut(s)	48, 184, 280
MboII	GAAGA	7 cut(s)	86, 86, 108, 111, 117, 120, 233
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	5 cut(s)	97, 133, 171, 229, 298
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	8 cut(s)	41, 179, 188, 197, 206, 215, 218, 310
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	48, 184, 280
NmeAIII	GCCGAG	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	211, 220
Psp124BI	GAGCTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	2 cut(s)	210, 219
Sau3AI	GATC	3 cut(s)	48, 184, 280
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	8 cut(s)	37, 110, 152, 163, 231, 280, 290, 306
SfaNI	GCATC	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	99, 231, 266
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	2 cut(s)	209, 218
TspDTI	ATGAA	2 cut(s)	17, 296
TspRI	CASTG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.