Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Reverse (-)

63788749 .. 63789144

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGTTCTTCCCAGAAAAGCTCCCAATGGAGGAGCGTCTTCGACGGCGTGAAACTCAAGACCATCCCATCAGTGCCAGAAGCTCTAATGGCCGAAATCAACACTGCAATTTGCAATCTTGAATACGCACGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCAATCTCGAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGTCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATATCTCTCACATCTCAGCAGCTGCACAAACCCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.88

Weight (kDa)

8.48

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	30, 220
AgsI	TTSAA	3 cut(s)	122, 171, 292
AluBI	AGCT	6 cut(s)	21, 83, 189, 268, 343, 376
AluI	AGCT	6 cut(s)	21, 83, 189, 268, 343, 376
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	4 cut(s)	248, 257, 373, 376
AspLEI	GCGC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	4 cut(s)	235, 244, 363, 385
BccI	CCATC	2 cut(s)	71, 76
BceAI	ACGGC	2 cut(s)	61, 317
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	214
BisI	GCNGC	4 cut(s)	249, 258, 374, 377
BlsI	GCNGC	4 cut(s)	250, 259, 375, 378
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 220
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	30, 220
BseMII	CTCAG	2 cut(s)	215, 383
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	235, 244, 363, 385
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	30, 220
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	223, 319
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	214, 382
BspFNI	CGCG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	223, 319
BssT1I	CCWWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	130, 241
BstDEI	CTNAG	2 cut(s)	201, 369
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	226, 322
BstMBI	GATC	2 cut(s)	223, 319
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 218, 227, 236, 245, 254, 257, 349
BstSCI	CCNGG	1 cut(s)	212
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	235, 244, 363, 385
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	78, 102
Cac8I	GCNNGC	2 cut(s)	130, 241
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	201, 369
DpnI	GATC	2 cut(s)	225, 321
DpnII	GATC	2 cut(s)	223, 319
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	1 cut(s)	356
FaqI	GGGAC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	4 cut(s)	249, 258, 374, 377
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	249, 258, 374, 377
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	249, 258, 374, 377
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	58, 119, 146, 175
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	107, 114, 379
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 218, 227, 236, 245, 254, 257, 349
HpyF3I	CTNAG	2 cut(s)	201, 369
HpySE526I	ACGT	1 cut(s)	155
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	223, 319
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	26, 33
LpnPI	CCDG	7 cut(s)	26, 90, 212, 225, 227, 246, 330
Lsp1109I	GCAGC	4 cut(s)	235, 244, 363, 385
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	155
MalI	GATC	2 cut(s)	225, 321
MboI	GATC	2 cut(s)	223, 319
MboII	GAAGA	6 cut(s)	31, 134, 156, 159, 190, 272
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	5 cut(s)	24, 145, 210, 268, 337
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	8 cut(s)	89, 218, 227, 236, 245, 254, 257, 349
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	223, 319
NspV	TTCGAA	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	250, 259, 375, 378
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	285
SatI	GCNGC	4 cut(s)	249, 258, 374, 377
Sau3AI	GATC	2 cut(s)	223, 319
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	5 cut(s)	42, 147, 176, 270, 305
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	78, 109
TseI	GCWGC	4 cut(s)	248, 257, 373, 376
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	78, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.