RchiOBHm_Chr5g0002021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001728
Physical Location & Seq
Forward (+)
1144473 .. 1144811
339 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28340

Sequence Viewer

Length: 252 bp
ATGGGTTCTTCCCAGAAAAGCTCCCAATGGAGGAGCGTCTTCGACGGCGTGAAACTCAAGACCATCCCATCAATGCCAGAAGTTCTAATGGCTGAGATCAACACTGCAATTTGCAATCTTGAATACGCATGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCAAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.91

Weight (kDa)

6.14

Isoelectric Point (pI)

74.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 30, 229
AgsI TTSAA 2 cut(s) 122, 180
AluBI AGCT 2 cut(s) 21, 198
AluI AGCT 2 cut(s) 21, 198
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 223
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 2 cut(s) 71, 76
BceAI ACGGC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 229
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 30, 229
BseMII CTCAG 2 cut(s) 84, 224
BseRI GAGGAG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 30, 229
BsmFI GGGAC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 96, 232
BspACI CCGC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 85, 223
BspPI GGATC 1 cut(s) 240
BssMI GATC 2 cut(s) 96, 232
Bst6I CTCTTC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 93, 210
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 2 cut(s) 99, 235
BstMBI GATC 2 cut(s) 96, 232
BstMWI GCNNNNNNNGC 3 cut(s) 227, 236, 245
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 134
CseI GACGC 1 cut(s) 25
CviAII CATG 1 cut(s) 129
CviJI RGCY 4 cut(s) 21, 92, 198, 239
CviKI_1 RGCY 4 cut(s) 21, 92, 198, 239
DdeI CTNAG 2 cut(s) 93, 210
DpnI GATC 2 cut(s) 98, 234
DpnII GATC 2 cut(s) 96, 232
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 1 cut(s) 132
FaiI YATR 2 cut(s) 130, 250
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 128
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 200
GlaI GCGC 1 cut(s) 133
HapII CCGG 1 cut(s) 223
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 223
Hpy188III TCNNGA 3 cut(s) 58, 119, 146
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 107, 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 236, 245
HpyF3I CTNAG 2 cut(s) 93, 210
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 96, 232
LmnI GCTCC 2 cut(s) 26, 33
LpnPI CCDG 4 cut(s) 26, 90, 221, 236
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 155
MalI GATC 2 cut(s) 98, 234
MboI GATC 2 cut(s) 96, 232
MboII GAAGA 6 cut(s) 31, 134, 156, 159, 165, 168
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 108
MnlI CCTC 4 cut(s) 24, 145, 181, 219
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 227, 236, 245
NciI CCSGG 1 cut(s) 223
NdeII GATC 2 cut(s) 96, 232
NlaIII CATG 1 cut(s) 132
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 200
SacI GAGCTC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 96, 232
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 23, 158, 200, 211
SfaNI GCATC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 132
Sse9I AATT 1 cut(s) 108
SsiI CCGC 1 cut(s) 230
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 221
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 42, 147
TasI AATT 1 cut(s) 108
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 1 cut(s) 109
TspRI CASTG 1 cut(s) 109
XceI RCATGY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.