Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

44419314 .. 44424930

Gene Structure 5617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGCGTCGGATGACTGAGATACCAAGTGGAGCGAGGGACCGAACTCGTCGAATCCCAAAAGTTAATGGGGGGACCAAACAGAGCCTCGATGATGAATCTCCAATTAAATTCAGCAACTACTGCAAATTAAACAGAGTGAATCATCATCATCATCTTCGTTTGTGTAAGGGCAGCAGGACAGCATACTGTTACTTCTATTATGTTAGAAAAAACAGTCCCATTAGTCCTCCACCTCCTACAGTCAGTAGTGAGATTGTGATCAGAGAGACTGTTCAAGTTGTCCATGATGAGTCTGATCCAGTGAAGAATGGAGCGAACAAAGAACGAGAAGAAGAGATTGCAAATGCAAAGAAGGAAGTCGAAGAGCAGCTAAGATTGCACAGATCATGGATATCAAATAAGAAGCATGAAGGGTATGAAGGAAGAGGAGTCATGTGTATGACTTGCCATCCAAGTTTAACAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0042546 GO:0043170 GO:0044085 GO:0044238 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

157

Amino Acids

18.19

Weight (kDa)

9.48

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	4, 174, 370
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	40, 75
AvaII	GGWCC	2 cut(s)	40, 75
BbvI	GCAGC	3 cut(s)	16, 186, 382
BccI	CCATC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	5, 175, 371
BlsI	GCNGC	3 cut(s)	6, 176, 372
Bme18I	GGWCC	2 cut(s)	40, 75
BmgT120I	GGNCC	2 cut(s)	40, 75
BmiI	GGNNCC	2 cut(s)	41, 76
BsaBI	GATNNNNATC	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	260
BseGI	GGATG	2 cut(s)	18, 451
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	3 cut(s)	16, 186, 382
BslFI	GGGAC	3 cut(s)	53, 88, 204
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	3 cut(s)	53, 88, 204
Bsp143I	GATC	3 cut(s)	261, 298, 386
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	41, 76
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	261, 298, 386
Bst4CI	ACNGT	4 cut(s)	191, 218, 244, 274
Bst6I	CTCTTC	3 cut(s)	330, 360, 421
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstDEI	CTNAG	3 cut(s)	18, 374, 471
BstF5I	GGATG	2 cut(s)	18, 451
BstKTI	GATC	3 cut(s)	264, 301, 389
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	261, 298, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 379
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	16, 186, 382
BtsCI	GGATG	2 cut(s)	18, 451
BtsIMutI	CAGTG	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	40, 75
CviAII	CATG	4 cut(s)	287, 390, 410, 436
CviJI	RGCY	2 cut(s)	87, 373
CviKI_1	RGCY	2 cut(s)	87, 373
DdeI	CTNAG	3 cut(s)	18, 374, 471
DpnI	GATC	3 cut(s)	263, 300, 388
DpnII	GATC	3 cut(s)	261, 298, 386
Eam1104I	CTCTTC	3 cut(s)	330, 360, 421
EarI	CTCTTC	3 cut(s)	330, 360, 421
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	40, 75
EcoRV	GATATC	1 cut(s)	396
FaeI	CATG	4 cut(s)	290, 393, 413, 439
FaiI	YATR	8 cut(s)	187, 204, 288, 391, 411, 420, 437, 443
FaqI	GGGAC	3 cut(s)	53, 88, 204
FatI	CATG	4 cut(s)	286, 389, 409, 435
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	5, 175, 371
FokI	GGATG	2 cut(s)	25, 438
Fsp4HI	GCNGC	3 cut(s)	5, 175, 371
GluI	GCNGC	3 cut(s)	5, 175, 371
Hin1II	CATG	4 cut(s)	290, 393, 413, 439
HinfI	GANTC	5 cut(s)	54, 98, 142, 293, 432
Hpy188I	TCNGA	3 cut(s)	12, 266, 298
Hpy99I	CGWCG	2 cut(s)	12, 54
HpyAV	CCTTC	3 cut(s)	349, 407, 416
HpyCH4III	ACNGT	4 cut(s)	191, 218, 244, 274
HpyCH4V	TGCA	5 cut(s)	4, 126, 344, 350, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 379
HpyF3I	CTNAG	3 cut(s)	18, 374, 471
Hsp92II	CATG	4 cut(s)	290, 393, 413, 439
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	261, 298, 386
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	32, 314
LpnPI	CCDG	2 cut(s)	163, 315
Lsp1109I	GCAGC	3 cut(s)	16, 186, 382
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	263, 300, 388
MboI	GATC	3 cut(s)	261, 298, 386
MboII	GAAGA	6 cut(s)	149, 319, 344, 347, 377, 438
MluCI	AATT	3 cut(s)	105, 110, 128
MlyI	GAGTC	2 cut(s)	302, 441
MnlI	CCTC	5 cut(s)	30, 98, 240, 246, 422
MseI	TTAA	4 cut(s)	66, 108, 131, 461
MslI	CAYNNNNRTG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	123, 379
NdeII	GATC	3 cut(s)	261, 298, 386
NlaIII	CATG	4 cut(s)	290, 393, 413, 439
NlaIV	GGNNCC	2 cut(s)	41, 76
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	54, 98, 142
PkrI	GCNGC	3 cut(s)	6, 176, 372
PleI	GAGTC	2 cut(s)	301, 440
PpsI	GAGTC	2 cut(s)	301, 440
PspN4I	GGNNCC	2 cut(s)	41, 76
PspPI	GGNCC	2 cut(s)	40, 75
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	66, 108, 131, 461
SatI	GCNGC	3 cut(s)	5, 175, 371
Sau3AI	GATC	3 cut(s)	261, 298, 386
Sau96I	GGNCC	2 cut(s)	40, 75
SchI	GAGTC	2 cut(s)	302, 441
SetI	ASST	2 cut(s)	238, 375
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	40, 75
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	105, 110, 128
TaaI	ACNGT	4 cut(s)	191, 218, 244, 274
TaqI	TCGA	3 cut(s)	52, 90, 363
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	105, 110, 128
TfiI	GAWTC	3 cut(s)	54, 98, 142
Tru1I	TTAA	4 cut(s)	66, 108, 131, 461
Tru9I	TTAA	4 cut(s)	66, 108, 131, 461
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	3 cut(s)	4, 174, 370
TspDTI	ATGAA	3 cut(s)	111, 426, 435
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	40, 75
XapI	RAATTY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.