Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

8763580 .. 8765385

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1103600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCGGAAGCTCTAATGGCGGAGATCAACACAGCAATTTGCAATCTCGAATACGCACGCGCCACCGATCTTCTCGGCTCTCCGTCTTCTTCGTCTTCGATGGCGAAAACCGAGAGCTCTGATCAACCCGTATTCAATGCAAGAATGGCGGACCAAGCATACAAGGCAGGCTGCGCAGCATTGGCAGCTGGGAAGCTCGACGAGGCCCTTCTCTCTCTAAACACTTCTCTCTCTAAGTGCCCACCTGACCAGACCTCTGCCGTGGCCAAGCTCCACTCTTTGATCTCTCTCACATCTCAGCAGCTCCACAAGCCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.18

Weight (kDa)

5.53

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	175
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	20, 149
AcoI	YGGCCR	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	7 cut(s)	11, 117, 188, 196, 271, 304, 321
AluI	AGCT	7 cut(s)	11, 117, 188, 196, 271, 304, 321
Alw21I	GWGCWC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	204, 264
ApeKI	GCWGC	4 cut(s)	171, 176, 185, 301
AspLEI	GCGC	2 cut(s)	62, 176
AspS9I	GGNCC	2 cut(s)	151, 205
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	78, 87
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	158, 188, 197, 313
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	121
BisI	GCNGC	4 cut(s)	172, 177, 186, 302
BlsI	GCNGC	4 cut(s)	173, 178, 187, 303
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 205
BpiI	GAAGAC	2 cut(s)	78, 87
BsaJI	CCNNGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	158, 188, 197, 313
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	206, 266
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	2 cut(s)	206, 266
Bsp1286I	GDGCHC	2 cut(s)	119, 242
Bsp143I	GATC	4 cut(s)	24, 67, 121, 282
BspACI	CCGC	2 cut(s)	20, 149
BspANI	GGCC	2 cut(s)	206, 266
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	24, 67, 121, 282
BstC8I	GCNNGC	2 cut(s)	58, 169
BstDEI	CTNAG	2 cut(s)	234, 297
BstDSI	CCRYGG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 176
BstKTI	GATC	4 cut(s)	27, 70, 124, 285
BstMBI	GATC	4 cut(s)	24, 67, 121, 282
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 146, 155, 164, 173, 182, 185, 310
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	158, 188, 197, 313
BstV2I	GAAGAC	2 cut(s)	78, 87
BsuRI	GGCC	2 cut(s)	206, 266
BtgI	CCRYGG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	58, 169
CfoI	GCGC	2 cut(s)	62, 176
Cfr13I	GGNCC	2 cut(s)	151, 205
DdeI	CTNAG	2 cut(s)	234, 297
DpnI	GATC	4 cut(s)	26, 69, 123, 284
DpnII	GATC	4 cut(s)	24, 67, 121, 282
EaeI	YGGCCR	1 cut(s)	264
EciI	GGCGGA	2 cut(s)	35, 164
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	119
FaiI	YATR	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	172, 177, 186, 302
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	172, 177, 186, 302
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	2 cut(s)	61, 175
GluI	GCNGC	4 cut(s)	172, 177, 186, 302
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	206, 266
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	2 cut(s)	62, 176
Hin6I	GCGC	2 cut(s)	60, 174
HinP1I	GCGC	2 cut(s)	60, 174
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	42, 140
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 146, 155, 164, 173, 182, 185, 310
HpyF3I	CTNAG	2 cut(s)	234, 297
HspAI	GCGC	2 cut(s)	60, 174
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	24, 67, 121, 282
LmnI	GCTCC	2 cut(s)	276, 309
LpnPI	CCDG	5 cut(s)	18, 153, 174, 258, 263
Lsp1109I	GCAGC	4 cut(s)	158, 188, 197, 313
MalI	GATC	4 cut(s)	26, 69, 123, 284
MboI	GATC	4 cut(s)	24, 67, 121, 282
MboII	GAAGA	4 cut(s)	62, 78, 81, 87
MhlI	GDGCHC	2 cut(s)	119, 242
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	2 cut(s)	196, 265
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	188, 321
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	8 cut(s)	17, 146, 155, 164, 173, 182, 185, 310
NdeII	GATC	4 cut(s)	24, 67, 121, 282
NmeAIII	GCCGAG	1 cut(s)	54
NsbI	TGCGCA	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	173, 178, 187, 303
Psp124BI	GAGCTC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	151, 205
PvuII	CAGCTG	2 cut(s)	188, 321
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	4 cut(s)	172, 177, 186, 302
Sau3AI	GATC	4 cut(s)	24, 67, 121, 282
Sau96I	GGNCC	2 cut(s)	151, 205
SduI	GDGCHC	2 cut(s)	119, 242
SetI	ASST	9 cut(s)	13, 119, 190, 198, 247, 257, 273, 306, 323
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	20, 149
SstI	GAGCTC	1 cut(s)	119
TaqI	TCGA	3 cut(s)	48, 98, 198
TasI	AATT	1 cut(s)	36
TseI	GCWGC	4 cut(s)	171, 176, 185, 301
TspGWI	ACGGA	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.