Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

8100440 .. 8103213

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACTCTCGCGAACTCACTCTGGTCTCCACCGCCACCGTCTTCGGTGCCCTAGCCTCTGCGCTAGCCATCCGCGTCTTCTTCACAAAACCTAAGAAGCAGTCCCCAAAACTCAATTCCTCGCAAAACGGCGTCGTTTCCAGGAAGTGCTCTTCTCAGAGCCCTTTTGACCCCTCAAAACGCAAAGGGTATTTGACATGGGATGATTACTTTATGGCAATTGCGTTTTTATCAGCTGAAAGATCCAAAGACCCTAACAGGCAGGTTGGAGCATGCTTGGTGAGTCAAAGTGGTATAATTCTAGGAATAGGGTATAATGGTTTCCCAAGAGGTTGTTCGGACGACAAGCTCCCTTGGGCAAAGATATCCAGAACTGGGGATCCTTTGGAGACAAAATATCCTTATGTTTGTCATGCTGAAGTCAATGCAATCCTAAACACCAATCATGCTTCTGCTGCTGGACAGAGGCTTTATGTGACCATGTTCCCCTGCAATGAGTGTGCCAAGATAATCATTCAGTCAGGAGTTGCTGAAGTTGTATATTTTGTGGAAAAGAGGTTAAACAATCCAGATATCACGTACATTGCTTCTCACAAACTACTCTCAATGGCTGGTGTTAAAGTCAGGAAACATCAACCACAAATGAACCAAATTCTAATCAACTTTGAGGAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

225

Amino Acids

24.9

Weight (kDa)

9.39

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	66 - 182	3.8e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	67 - 189	5.7e-13	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	2 cut(s)	12, 75
AciI	CCGC	2 cut(s)	33, 73
AclWI	GGATC	3 cut(s)	237, 374, 387
AcsI	RAATTY	1 cut(s)	651
AcuI	CTGAAG	2 cut(s)	438, 552
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	4 cut(s)	100, 132, 319, 351
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	2 cut(s)	236, 349
AluI	AGCT	2 cut(s)	236, 349
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	31, 383
AlwI	GGATC	3 cut(s)	237, 374, 387
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	164, 675
BbsI	GAAGAC	2 cut(s)	34, 70
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	31, 383
BfaI	CTAG	3 cut(s)	53, 65, 302
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	49, 381, 672
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	384
BmtI	GCTAGC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	34, 70
BsaAI	YACGTR	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	499, 582
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	69, 208
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	2 cut(s)	499, 582
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	12, 75
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	31, 383
BsmFI	GGGAC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	4 cut(s)	52, 152, 164, 675
Bsp143I	GATC	2 cut(s)	242, 379
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	2 cut(s)	33, 73
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	12, 75
BspLI	GGNNCC	3 cut(s)	49, 381, 672
BspMI	ACCTGC	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	237, 374, 387
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	499, 582
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	242, 379
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	66, 274
BstDEI	CTNAG	2 cut(s)	93, 156
BstF5I	GGATG	2 cut(s)	69, 208
BstFNI	CGCG	2 cut(s)	12, 75
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	245, 382
BstMAI	GTCTC	2 cut(s)	31, 383
BstMBI	GATC	2 cut(s)	242, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	2 cut(s)	12, 75
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	2 cut(s)	34, 70
BstX2I	RGATCY	2 cut(s)	242, 379
BstYI	RGATCY	2 cut(s)	242, 379
BtsCI	GGATG	2 cut(s)	69, 208
BtuMI	TCGCGA	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	66, 274
CfoI	GCGC	1 cut(s)	64
CseI	GACGC	2 cut(s)	64, 121
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	5 cut(s)	198, 273, 413, 446, 481
CviJI	RGCY	8 cut(s)	56, 68, 162, 236, 349, 469, 611, 673
CviKI_1	RGCY	8 cut(s)	56, 68, 162, 236, 349, 469, 611, 673
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	93, 156
DpnI	GATC	2 cut(s)	244, 381
DpnII	GATC	2 cut(s)	242, 379
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	164, 675
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	2 cut(s)	366, 574
Eco57I	CTGAAG	2 cut(s)	438, 552
EcoRII	CCWGG	1 cut(s)	140
EcoRV	GATATC	2 cut(s)	366, 574
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	164, 675
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	5 cut(s)	201, 276, 416, 449, 484
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	5 cut(s)	197, 272, 412, 445, 480
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	56, 215
FriOI	GRGCYC	2 cut(s)	164, 675
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	53, 65, 302
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	456
HgaI	GACGC	2 cut(s)	64, 121
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	201, 276, 416, 449, 484
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	159, 340
Hpy188III	TCNNGA	5 cut(s)	11, 369, 522, 569, 625
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	2 cut(s)	428, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	93, 156
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	201, 276, 416, 449, 484
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	242, 379
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	269, 354, 670
Lsp1109I	GCAGC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	53, 65, 302
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	244, 381
MboI	GATC	2 cut(s)	242, 379
MboII	GAAGA	4 cut(s)	34, 70, 73, 144
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	242, 379
MhlI	GDGCHC	4 cut(s)	52, 152, 164, 675
MluCI	AATT	4 cut(s)	115, 219, 297, 651
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	67, 130, 184, 323, 459, 549, 661
MseI	TTAA	2 cut(s)	560, 618
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	2 cut(s)	12, 75
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	2 cut(s)	242, 379
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	201, 276, 416, 449, 484
NlaIV	GGNNCC	3 cut(s)	49, 381, 672
NmuCI	GTSAC	1 cut(s)	475
NruI	TCGCGA	1 cut(s)	12
NspI	RCATGY	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	49, 381, 672
PsuI	RGATCY	2 cut(s)	242, 379
PvuII	CAGCTG	1 cut(s)	236
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	560, 618
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	242, 379
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	4 cut(s)	52, 152, 164, 675
SetI	ASST	7 cut(s)	94, 238, 267, 334, 351, 560, 581
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	4 cut(s)	115, 219, 297, 651
SsiI	CCGC	2 cut(s)	33, 73
SspMI	CTAG	3 cut(s)	53, 65, 302
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	581
TasI	AATT	4 cut(s)	115, 219, 297, 651
Tru1I	TTAA	2 cut(s)	560, 618
Tru9I	TTAA	2 cut(s)	560, 618
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	17, 659
XapI	RAATTY	1 cut(s)	651
XceI	RCATGY	1 cut(s)	276
XspI	CTAG	3 cut(s)	53, 65, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.