Rorug01G0242800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001728
Physical Location & Seq
Forward (+)
34794281 .. 34795030
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0242800.1

Sequence Viewer

Length: 600 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCGTGGGAACTAGTTCTACTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACCGGTGCTGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACATCTTTAGCGACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTGTTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACCCCTCCGGAGCTGCTGACTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.8

Weight (kDa)

4.96

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.3e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 2 cut(s) 498, 528
AclWI GGATC 3 cut(s) 141, 330, 343
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 449
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 362
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 7, 199, 562, 584
AluI AGCT 4 cut(s) 7, 199, 562, 584
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 3 cut(s) 141, 330, 343
Ama87I CYCGRG 2 cut(s) 261, 523
Aor13HI TCCGGA 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 50, 199, 293, 584
AseI ATTAAT 1 cut(s) 348
AsiGI ACCGGT 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 316, 429
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 404, 464
AvaI CYCGRG 2 cut(s) 261, 523
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 262, 564
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 4 cut(s) 62, 186, 280, 571
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 94, 416
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 362
BfaI CTAG 2 cut(s) 315, 363
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 6 cut(s) 51, 200, 294, 499, 529, 585
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 6 cut(s) 52, 201, 295, 500, 530, 586
Bme1390I CCNGG 3 cut(s) 55, 94, 416
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 2 cut(s) 261, 523
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 3 cut(s) 245, 337, 358
BmrFI CCNGG 3 cut(s) 55, 94, 416
BpmI CTGGAG 2 cut(s) 93, 179
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 3 cut(s) 113, 282, 578
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 306, 486
BsaWI WCCGGW 3 cut(s) 371, 515, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 328, 334
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 2 cut(s) 306, 486
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 2 cut(s) 328, 334
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 4 cut(s) 62, 186, 280, 571
BseYI CCCAGC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 2 cut(s) 261, 523
BsiSI CCGG 4 cut(s) 54, 372, 516, 579
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 2 cut(s) 261, 523
Bsp1286I GDGCHC 3 cut(s) 262, 306, 564
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 5 cut(s) 112, 133, 186, 335, 409
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 2 cut(s) 498, 528
BspCNI CTCAG 1 cut(s) 576
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 3 cut(s) 245, 337, 358
BspPI GGATC 3 cut(s) 141, 330, 343
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 328, 334
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 306, 486
BssMI GATC 5 cut(s) 112, 133, 186, 335, 409
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 4 cut(s) 207, 452, 512, 539
Bst6I CTCTTC 2 cut(s) 272, 435
BstDEI CTNAG 2 cut(s) 563, 597
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 5 cut(s) 115, 136, 189, 338, 412
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 112, 133, 186, 335, 409
BstMWI GCNNNNNNNGC 3 cut(s) 504, 528, 593
BstNI CCWGG 2 cut(s) 94, 416
BstSCI CCNGG 3 cut(s) 53, 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 62, 186, 280, 571
BstX2I RGATCY 3 cut(s) 133, 186, 335
BstYI RGATCY 3 cut(s) 133, 186, 335
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 2 cut(s) 391, 445
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 563, 597
DpnI GATC 5 cut(s) 114, 135, 188, 337, 411
DpnII GATC 5 cut(s) 112, 133, 186, 335, 409
Eam1104I CTCTTC 2 cut(s) 272, 435
EarI CTCTTC 2 cut(s) 272, 435
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 262, 564
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 562
Eco88I CYCGRG 2 cut(s) 261, 523
EcoICRI GAGCTC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 2 cut(s) 262, 564
FaeI CATG 2 cut(s) 394, 448
FaiI YATR 5 cut(s) 177, 210, 392, 446, 504
FatI CATG 2 cut(s) 390, 444
Fnu4HI GCNGC 6 cut(s) 51, 200, 294, 499, 529, 585
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 262, 564
Fsp4HI GCNGC 6 cut(s) 51, 200, 294, 499, 529, 585
FspBI CTAG 2 cut(s) 315, 363
GluI GCNGC 6 cut(s) 51, 200, 294, 499, 529, 585
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 93, 179
HapII CCGG 4 cut(s) 54, 372, 516, 579
Hin1II CATG 2 cut(s) 394, 448
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 4 cut(s) 54, 372, 516, 579
HphI GGTGA 2 cut(s) 404, 464
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 579
Hpy8I GTNNAC 1 cut(s) 360
HpyCH4III ACNGT 4 cut(s) 207, 452, 512, 539
HpyCH4V TGCA 3 cut(s) 202, 285, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 504, 528, 593
HpyF3I CTNAG 2 cut(s) 563, 597
Hsp92II CATG 2 cut(s) 394, 448
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 5 cut(s) 112, 133, 186, 335, 409
LmnI GCTCC 2 cut(s) 4, 581
Lsp1109I GCAGC 4 cut(s) 62, 186, 280, 571
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 363
MalI GATC 5 cut(s) 114, 135, 188, 337, 411
MboI GATC 5 cut(s) 112, 133, 186, 335, 409
MboII GAAGA 3 cut(s) 289, 419, 422
MflI RGATCY 3 cut(s) 133, 186, 335
MhlI GDGCHC 3 cut(s) 262, 306, 564
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 2 cut(s) 316, 429
MseI TTAA 2 cut(s) 156, 348
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 4 cut(s) 54, 372, 516, 579
MspR9I CCNGG 3 cut(s) 55, 94, 416
MvaI CCWGG 2 cut(s) 94, 416
MwoI GCNNNNNNNGC 3 cut(s) 504, 528, 593
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 112, 133, 186, 335, 409
NlaIII CATG 2 cut(s) 394, 448
NlaIV GGNNCC 3 cut(s) 245, 337, 358
PaeR7I CTCGAG 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 316, 429
PfeI GAWTC 2 cut(s) 100, 123
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 6 cut(s) 52, 201, 295, 500, 530, 586
PshBI ATTAAT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 92, 414
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 3 cut(s) 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsrI GAACNNNNNNTAC 2 cut(s) 304, 336
PsuI RGATCY 3 cut(s) 133, 186, 335
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 2 cut(s) 156, 348
SatI GCNGC 6 cut(s) 51, 200, 294, 499, 529, 585
Sau3AI GATC 5 cut(s) 112, 133, 186, 335, 409
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 3 cut(s) 55, 94, 416
SduI GDGCHC 3 cut(s) 262, 306, 564
SetI ASST 9 cut(s) 9, 98, 201, 219, 284, 474, 496, 564, 586
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 557
SmoI CTYRAG 4 cut(s) 128, 261, 297, 557
SpeI ACTAGT 2 cut(s) 314, 362
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 498, 528
SspMI CTAG 2 cut(s) 315, 363
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 3 cut(s) 53, 92, 414
TaaI ACNGT 4 cut(s) 207, 452, 512, 539
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
TauI GCSGC 2 cut(s) 501, 531
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 348
Tru9I TTAA 2 cut(s) 156, 348
TseI GCWGC 4 cut(s) 50, 199, 293, 584
TspDTI ATGAA 2 cut(s) 290, 379
TspGWI ACGGA 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 357
VspI ATTAAT 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 429
XspI CTAG 2 cut(s) 315, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.