Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Forward (+)

29239974 .. 29242616

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTCATCTCGGGAAGAGTACGATTCAAAGAGTTTTAAATGGTTACAATGGGACCGTGATGACTTATGGTCAGACGGGTACTGGTAAAACATTTACCTTAGGACAACTAGGAGACAAAGAAACATCTGATCGTGAAATCATAGTTCGTGCAATGGAGGACATTTTCGCTGGTATATCTTTGGAGACTGATTCTGTCTCTGTCTTAAAATTTAACGTTGATTCCGAGCCCAAATTGTGTAGCTTTATATGGATAACCTCAACATCAAATGATGATATTCCCATTGTTGAAGATCCAAAAACCGGAGATAACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

106

Amino Acids

11.43

Weight (kDa)

4.53

Isoelectric Point (pI)

6.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	5 - 65	9.8e-16	Kinesin motor domain
Microtub_bd	PF16796	9 - 62	2.5e-08	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	314
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	22, 82
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	29, 290
AhdI	GACNNNNNGTC	1 cut(s)	69
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	108, 179, 202
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	108, 179, 202
BfaI	CTAG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	54
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	3 cut(s)	108, 179, 202
BsmFI	GGGAC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	130, 292
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	130, 292
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	133, 295
BstMAI	GTCTC	3 cut(s)	108, 179, 202
BstMBI	GATC	2 cut(s)	130, 292
BstUI	CGCG	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	21, 81
CviJI	RGCY	2 cut(s)	229, 243
CviKI_1	RGCY	2 cut(s)	229, 243
CviQI	GTAC	2 cut(s)	21, 81
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	2 cut(s)	132, 294
DpnII	GATC	2 cut(s)	130, 292
DraI	TTTAAA	1 cut(s)	39
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	5 cut(s)	69, 143, 176, 248, 250
FaqI	GGGAC	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	303
HinfI	GANTC	3 cut(s)	25, 191, 221
HpaII	CCGG	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	75, 130, 226
Hpy188III	TCNNGA	2 cut(s)	13, 134
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	130, 292
LpnPI	CCDG	2 cut(s)	69, 156
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	132, 294
MboI	GATC	2 cut(s)	130, 292
MboII	GAAGA	2 cut(s)	28, 302
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	209, 233
MluI	ACGCGT	1 cut(s)	312
MnlI	CCTC	2 cut(s)	151, 268
MseI	TTAA	3 cut(s)	38, 206, 213
MspI	CCGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	314
NdeII	GATC	2 cut(s)	130, 292
NlaIV	GGNNCC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	25, 191, 221
Psp1406I	AACGTT	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	22, 82
RsaNI	GTAC	2 cut(s)	21, 81
SaqAI	TTAA	3 cut(s)	38, 206, 213
Sau3AI	GATC	2 cut(s)	130, 292
Sau96I	GGNCC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	101, 219, 245, 260
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	2 cut(s)	209, 233
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	219
TasI	AATT	2 cut(s)	209, 233
TfiI	GAWTC	3 cut(s)	25, 191, 221
Tru1I	TTAA	3 cut(s)	38, 206, 213
Tru9I	TTAA	3 cut(s)	38, 206, 213
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.