Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Forward (+)

34878625 .. 34885110

Gene Structure 6486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAGGGGAAATCGTACCAGGGTGAAAATCCGTTAAATGAGGGCACGACTACCTCAAGTTTGAGCTCCGCGACACCGACGCGAGCGTGGCCAATACGCTCCGGCGCTGATGATCGCCGAGGTCCCACGAGGGATTATCATTATGAAGTTGCGAAGGGGGCCTCACTGCCTGCAAGGTTGATTCTAATGTTGCTCGGCAAACGACGTCGTCTGTTCGCTCCAATCCAACGTCTTCTTCCACTTCACAGCGCTCTGTCACTCCCACTTCTCGGATTCCGACCTCCAATTCCGAGTTTTAGCAGGAGTGTATTGAATGGAAATAATGGGACAGTCATGGCTTACGGTCAAATTGGTACAGGGAAGATTTACACACTTGGCAGGCTGGGTTGTGATGATGCATCGGAGCGTGGTATTATGGCTAGAGCTTTGCAGGACATTATTTTGAGTACGGCTCCGGAGTCTGATACAGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTGCTTGCACTAGAAAAGACTAATATTCCCATTCACGAGGACCCTAAGGCCAGTGAGGTGTCACTTCCTGGTGCTTCGGTAATGGATTCTGCTCAAGTCCCCCGTGCTGCAACAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGTGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGCTGTTCAAAGTGAAACCAAAACCACAAAGAAAGCTAAAGGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCATCAATGGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAAAATTTGGGTGTATTTCTATGAGGAGAAGAACTTTGAACTGGAGTGTGATCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

325

Amino Acids

35.58

Weight (kDa)

5.63

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	100 - 201	5.6e-20	Kinesin motor domain
Microtub_bd	PF16796	101 - 173	6.4e-07	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	71, 82
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	704
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	817, 921
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	4 cut(s)	17, 355, 448, 494
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	269, 722, 884
AgsI	TTSAA	6 cut(s)	313, 702, 758, 776, 830, 956
AjnI	CCWGG	3 cut(s)	18, 580, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	6 cut(s)	66, 425, 490, 675, 738, 803
AluI	AGCT	6 cut(s)	66, 425, 490, 675, 738, 803
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	869
Aor13HI	TCCGGA	1 cut(s)	454
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	3 cut(s)	89, 159, 561
ApeKI	GCWGC	3 cut(s)	487, 620, 905
ApoI	RAATTY	2 cut(s)	817, 921
AspLEI	GCGC	2 cut(s)	107, 251
AspS9I	GGNCC	3 cut(s)	122, 159, 553
AsuHPI	GGTGA	2 cut(s)	35, 737
AvaII	GGWCC	2 cut(s)	122, 553
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	2 cut(s)	127, 548
BbsI	GAAGAC	2 cut(s)	224, 840
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	499, 607, 892
BccI	CCATC	1 cut(s)	886
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	3 cut(s)	20, 582, 856
BclI	TGATCA	2 cut(s)	892, 967
BfaI	CTAG	2 cut(s)	420, 524
BfmI	CTRYAG	1 cut(s)	739
BfoI	RGCGCY	2 cut(s)	108, 252
BisI	GCNGC	3 cut(s)	488, 621, 906
BlsI	GCNGC	3 cut(s)	489, 622, 907
Bme1390I	CCNGG	3 cut(s)	20, 582, 856
Bme18I	GGWCC	2 cut(s)	122, 553
BmgT120I	GGNCC	3 cut(s)	122, 159, 553
BmiI	GGNNCC	5 cut(s)	124, 160, 453, 555, 811
BmrFI	CCNGG	3 cut(s)	20, 582, 856
BmsI	GCATC	4 cut(s)	385, 407, 718, 728
BpiI	GAAGAC	2 cut(s)	224, 840
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu10I	CCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	2 cut(s)	40, 591
BsaHI	GRCGYC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	19, 118
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 722, 884
Bse1I	ACTGG	2 cut(s)	564, 963
Bse21I	CCTNAGG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	3 cut(s)	20, 582, 856
BseDI	CCNNGG	2 cut(s)	19, 118
BseLI	CCNNNNNNNGG	3 cut(s)	269, 722, 884
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	564, 963
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	499, 607, 892
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	2 cut(s)	71, 82
BshFI	GGCC	3 cut(s)	91, 161, 563
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	102, 455
BslFI	GGGAC	3 cut(s)	108, 340, 596
BslI	CCNNNNNNNGG	3 cut(s)	269, 722, 884
BsmFI	GGGAC	3 cut(s)	108, 340, 596
BsnI	GGCC	3 cut(s)	91, 161, 563
Bsp1286I	GDGCHC	2 cut(s)	47, 68
Bsp13I	TCCGGA	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	112, 874, 892, 967
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	91, 161, 563
BspCNI	CTCAG	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	71, 82
BspLI	GGNNCC	5 cut(s)	124, 160, 453, 555, 811
BspPI	GGATC	1 cut(s)	869
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	564, 963
BssECI	CCNNGG	2 cut(s)	19, 118
BssMI	GATC	4 cut(s)	112, 874, 892, 967
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	2 cut(s)	127, 548
Bst2BI	CACGAG	2 cut(s)	127, 548
Bst2UI	CCWGG	3 cut(s)	20, 582, 856
Bst4CI	ACNGT	3 cut(s)	331, 344, 469
BstACI	GRCGYC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	4 cut(s)	84, 171, 380, 519
BstDEI	CTNAG	2 cut(s)	558, 676
BstFNI	CGCG	2 cut(s)	71, 82
BstH2I	RGCGCY	2 cut(s)	108, 252
BstHHI	GCGC	2 cut(s)	107, 251
BstKTI	GATC	4 cut(s)	115, 877, 895, 970
BstMBI	GATC	4 cut(s)	112, 874, 892, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 158, 809
BstNI	CCWGG	3 cut(s)	20, 582, 856
BstSCI	CCNGG	3 cut(s)	18, 580, 854
BstSFI	CTRYAG	1 cut(s)	739
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	71, 82
BstV1I	GCAGC	3 cut(s)	499, 607, 892
BstV2I	GAAGAC	2 cut(s)	224, 840
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	91, 161, 563
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 474, 571
Cac8I	GCNNGC	4 cut(s)	84, 171, 380, 519
CfoI	GCGC	2 cut(s)	107, 251
Cfr13I	GGNCC	3 cut(s)	122, 159, 553
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	4 cut(s)	16, 354, 447, 493
CviAII	CATG	2 cut(s)	334, 496
CviQI	GTAC	4 cut(s)	16, 354, 447, 493
DdeI	CTNAG	2 cut(s)	558, 676
DpnI	GATC	4 cut(s)	114, 876, 894, 969
DpnII	GATC	4 cut(s)	112, 874, 892, 967
DraI	TTTAAA	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	122, 553
Eco47III	AGCGCT	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	3 cut(s)	122, 159, 553
EcoRII	CCWGG	3 cut(s)	18, 580, 854
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	2 cut(s)	337, 499
FalI	AAGNNNNNCTT	4 cut(s)	501, 533, 825, 857
FaqI	GGGAC	3 cut(s)	108, 340, 596
FatI	CATG	2 cut(s)	333, 495
FbaI	TGATCA	2 cut(s)	892, 967
Fnu4HI	GCNGC	3 cut(s)	488, 621, 906
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	488, 621, 906
FspBI	CTAG	2 cut(s)	420, 524
GlaI	GCGC	2 cut(s)	106, 250
GluI	GCNGC	3 cut(s)	488, 621, 906
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	108, 252
HaeIII	GGCC	3 cut(s)	91, 161, 563
HapII	CCGG	2 cut(s)	102, 455
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	107, 251
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	337, 499
Hin6I	GCGC	2 cut(s)	105, 249
HinP1I	GCGC	2 cut(s)	105, 249
HinfI	GANTC	5 cut(s)	181, 273, 458, 500, 599
HpaII	CCGG	2 cut(s)	102, 455
HphI	GGTGA	2 cut(s)	35, 737
Hpy188I	TCNGA	6 cut(s)	272, 278, 291, 403, 463, 747
Hpy188III	TCNNGA	3 cut(s)	455, 548, 830
Hpy99I	CGWCG	3 cut(s)	82, 207, 210
HpyAV	CCTTC	2 cut(s)	148, 851
HpyCH4III	ACNGT	3 cut(s)	331, 344, 469
HpyCH4IV	ACGT	3 cut(s)	205, 229, 704
HpyCH4V	TGCA	7 cut(s)	173, 398, 430, 487, 521, 623, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 158, 809
HpyF3I	CTNAG	2 cut(s)	558, 676
HpySE526I	ACGT	3 cut(s)	205, 229, 704
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	337, 499
HspAI	GCGC	2 cut(s)	105, 249
Kpn2I	TCCGGA	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	892, 967
Kzo9I	GATC	4 cut(s)	112, 874, 892, 967
LmnI	GCTCC	6 cut(s)	71, 104, 223, 403, 457, 809
Lsp1109I	GCAGC	3 cut(s)	499, 607, 892
LweI	GCATC	4 cut(s)	385, 407, 718, 728
MaeI	CTAG	2 cut(s)	420, 524
MaeII	ACGT	3 cut(s)	205, 229, 704
MaeIII	GTNAC	2 cut(s)	255, 573
MalI	GATC	4 cut(s)	114, 876, 894, 969
MboI	GATC	4 cut(s)	112, 874, 892, 967
MboII	GAAGA	5 cut(s)	224, 227, 373, 845, 958
MhlI	GDGCHC	2 cut(s)	47, 68
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	6 cut(s)	285, 348, 649, 817, 921, 973
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	250, 301
Mox20I	TGGCCA	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	3 cut(s)	35, 647, 976
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	102, 455
MspR9I	CCNGG	3 cut(s)	20, 582, 856
MvaI	CCWGG	3 cut(s)	20, 582, 856
MvnI	CGCG	2 cut(s)	71, 82
MwoI	GCNNNNNNNGC	3 cut(s)	88, 158, 809
NdeII	GATC	4 cut(s)	112, 874, 892, 967
NlaIII	CATG	2 cut(s)	337, 499
NlaIV	GGNNCC	5 cut(s)	124, 160, 453, 555, 811
NmeAIII	GCCGAG	2 cut(s)	143, 174
NmuCI	GTSAC	2 cut(s)	255, 573
NsiI	ATGCAT	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	181, 273, 500, 599
PflFI	GACNNNGTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	489, 622, 907
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PpuMI	RGGWCCY	2 cut(s)	122, 553
Psp124BI	GAGCTC	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	704
Psp5II	RGGWCCY	2 cut(s)	122, 553
Psp6I	CCWGG	3 cut(s)	18, 580, 854
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	3 cut(s)	18, 580, 854
PspN4I	GGNNCC	5 cut(s)	124, 160, 453, 555, 811
PspPI	GGNCC	3 cut(s)	122, 159, 553
PspPPI	RGGWCCY	2 cut(s)	122, 553
PsyI	GACNNNGTC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	4 cut(s)	17, 355, 448, 494
RsaNI	GTAC	4 cut(s)	16, 354, 447, 493
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	35, 647, 976
SatI	GCNGC	3 cut(s)	488, 621, 906
Sau3AI	GATC	4 cut(s)	112, 874, 892, 967
Sau96I	GGNCC	3 cut(s)	122, 159, 553
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	3 cut(s)	20, 582, 856
SduI	GDGCHC	2 cut(s)	47, 68
SfaNI	GCATC	4 cut(s)	385, 407, 718, 728
SfcI	CTRYAG	1 cut(s)	739
SinI	GGWCC	2 cut(s)	122, 553
SmlI	CTYRAG	2 cut(s)	55, 606
SmoI	CTYRAG	2 cut(s)	55, 606
Sse9I	AATT	6 cut(s)	285, 348, 649, 817, 921, 973
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	420, 524
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	18, 580, 854
TaaI	ACNGT	3 cut(s)	331, 344, 469
TaiI	ACGT	3 cut(s)	208, 232, 707
TasI	AATT	6 cut(s)	285, 348, 649, 817, 921, 973
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	181, 273, 500, 599
Tru1I	TTAA	3 cut(s)	35, 647, 976
Tru9I	TTAA	3 cut(s)	35, 647, 976
TscAI	CASTG	3 cut(s)	171, 474, 571
TseFI	GTSAC	2 cut(s)	255, 573
TseI	GCWGC	3 cut(s)	487, 620, 905
Tsp45I	GTSAC	2 cut(s)	255, 573
TspDTI	ATGAA	2 cut(s)	159, 468
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	171, 474, 571
Tth111I	GACNNNGTC	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	122, 553
XapI	RAATTY	2 cut(s)	817, 921
XspI	CTAG	2 cut(s)	420, 524
ZraI	GACGTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.