Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

80112346 .. 80113631

Gene Structure 1286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG571000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 536 bp

ATGGATTATCATTATGAAGTCGCGAAGGGGGCCTCACTGCCTACAAGGTTGATTCTAATACTGGCAAGTTGCTCGGCAAACGACGTCGTCTGTTCGCTCCAATCCAACGTCTTCTTCCACTTCACAGCGCTCCGTCACTCCCACTTCTCGGATTCCGACCTCCAATTCCGAGTTTTAGCAAGAGTTCGGCCAAGAAATGATGAGGATCGAATTTCTGATTCGGATTACGGCGACAGTGTTGAGATCCAGCCAGAGAGTGTATTGAATGGAAATAATGGGACAGTCATGGCTTACGGTCAAACTGGTACAGGGAAGATTTACACACTTGGCAGGCTGGGTTGTGATGATGCATCGGAGCGTGGTATTATGGTTAGAGCTTTGGAGGACATTATTTTGAGTACGGCTCCGGAGTCTGATACAGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTGCTTGCACTAGAAAAGACTAATATTCCCATTCACAAGGACCCTAAGACCAGTGAGGTGTCACTTCCTTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

178

Amino Acids

19.71

Weight (kDa)

4.74

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	83 - 173	4.5e-21	Kinesin motor domain
Microtub_bd	PF16796	85 - 157	9.3e-09	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	406
AclWI	GGATC	2 cut(s)	213, 238
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	307, 400, 446
AfeI	AGCGCT	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	377, 442
AluI	AGCT	2 cut(s)	377, 442
AlwI	GGATC	2 cut(s)	213, 238
Aor13HI	TCCGGA	1 cut(s)	406
Aor51HI	AGCGCT	1 cut(s)	129
AoxI	GGCC	2 cut(s)	30, 188
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	30, 505
AvaII	GGWCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	451
BceAI	ACGGC	2 cut(s)	244, 417
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BfaI	CTAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	30, 505
BmiI	GGNNCC	3 cut(s)	31, 405, 507
BmsI	GCATC	2 cut(s)	337, 359
BpiI	GAAGAC	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	66, 307, 516
Bse8I	GATNNNNATC	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	3 cut(s)	66, 307, 516
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	32, 190
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	32, 190
Bsp13I	TCCGGA	1 cut(s)	406
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	205, 243
Bsp68I	TCGCGA	1 cut(s)	23
BspANI	GGCC	2 cut(s)	32, 190
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	31, 405, 507
BspPI	GGATC	2 cut(s)	213, 238
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	3 cut(s)	66, 307, 516
BssMI	GATC	2 cut(s)	205, 243
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	4 cut(s)	236, 283, 296, 421
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	332, 471
BstDEI	CTNAG	1 cut(s)	510
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	208, 246
BstMBI	GATC	2 cut(s)	205, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	32, 190
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	4 cut(s)	35, 241, 426, 523
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	332, 471
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	30, 505
Csp6I	GTAC	3 cut(s)	306, 399, 445
CviAII	CATG	2 cut(s)	286, 448
CviJI	RGCY	8 cut(s)	32, 190, 250, 290, 334, 377, 404, 442
CviKI_1	RGCY	8 cut(s)	32, 190, 250, 290, 334, 377, 404, 442
CviQI	GTAC	3 cut(s)	306, 399, 445
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	2 cut(s)	207, 245
DpnII	GATC	2 cut(s)	205, 243
EaeI	YGGCCR	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	505
Eco47III	AGCGCT	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	30, 505
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	2 cut(s)	289, 451
FaiI	YATR	6 cut(s)	15, 287, 368, 433, 449, 458
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	285, 447
Fnu4HI	GCNGC	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	440
GsaI	CCCAGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	32, 190
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	289, 451
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	5 cut(s)	52, 152, 218, 410, 452
HpaII	CCGG	1 cut(s)	407
Hpy188I	TCNGA	7 cut(s)	151, 157, 170, 217, 223, 355, 415
Hpy188III	TCNNGA	2 cut(s)	22, 407
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	4 cut(s)	236, 283, 296, 421
HpyCH4IV	ACGT	2 cut(s)	84, 108
HpyCH4V	TGCA	3 cut(s)	350, 439, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	2 cut(s)	84, 108
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	289, 451
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	205, 243
LmnI	GCTCC	4 cut(s)	102, 135, 355, 409
LpnPI	CCDG	9 cut(s)	47, 260, 264, 288, 294, 316, 320, 420, 529
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	337, 359
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	84, 108
MaeIII	GTNAC	2 cut(s)	134, 525
MalI	GATC	2 cut(s)	207, 245
MboI	GATC	2 cut(s)	205, 243
MboII	GAAGA	3 cut(s)	103, 106, 325
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	164, 210
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	129, 180
MnlI	CCTC	5 cut(s)	43, 170, 196, 376, 514
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	205, 243
NlaIII	CATG	2 cut(s)	289, 451
NlaIV	GGNNCC	3 cut(s)	31, 405, 507
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	134, 525
NruI	TCGCGA	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	52, 152, 218, 452
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	31, 405, 507
PspPI	GGNCC	2 cut(s)	30, 505
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	442
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	3 cut(s)	307, 400, 446
RsaNI	GTAC	3 cut(s)	306, 399, 445
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	2 cut(s)	205, 243
Sau96I	GGNCC	2 cut(s)	30, 505
SchI	GAGTC	1 cut(s)	419
SetI	ASST	7 cut(s)	50, 87, 111, 162, 379, 444, 525
SfaNI	GCATC	2 cut(s)	337, 359
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	2 cut(s)	164, 210
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	1 cut(s)	476
TaaI	ACNGT	4 cut(s)	236, 283, 296, 421
TaiI	ACGT	2 cut(s)	87, 111
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	164, 210
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	4 cut(s)	52, 152, 218, 452
TscAI	CASTG	4 cut(s)	42, 241, 426, 523
TseFI	GTSAC	2 cut(s)	134, 525
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	2 cut(s)	134, 525
TspDTI	ATGAA	2 cut(s)	30, 420
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	4 cut(s)	42, 241, 426, 523
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	476
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.