Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

30642034 .. 30643057

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG250200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGGGGAAATCGTACCAGGGTGAAAATCCGTTAAATGAGGGCACGACTACCTCAAGTTTGAGCTCCGCGACACCGACGCGAGCGTGGCCAATGCGCTCCGGCGCTGATGATCACCGAGCGCTCCGTCACTCCCACTTCTCGGATTCCGACCTCCAATTCCGAGTTTTAGCAGGATGCTGGAAGAGTGAGTGGTTGCTATTAGAGTTCGGCCAAGAAATGATGAGGATCGAATTTCTGATTCAGATTATGGCGACAGTGTTGAGGTCTAGCCAGAGAGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.88

Weight (kDa)

6.26

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	71, 82
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	2 cut(s)	89, 211
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	17
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	236
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	2 cut(s)	89, 211
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	3 cut(s)	99, 107, 124
AsuHPI	GGTGA	2 cut(s)	35, 107
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	112
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	2 cut(s)	108, 125
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	71, 82
BshFI	GGCC	2 cut(s)	91, 213
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	2 cut(s)	91, 213
Bsp1286I	GDGCHC	2 cut(s)	47, 68
Bsp143I	GATC	2 cut(s)	112, 228
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	91, 213
BspFNI	CGCG	2 cut(s)	71, 82
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	112, 228
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	2 cut(s)	71, 82
BstH2I	RGCGCY	2 cut(s)	108, 125
BstHHI	GCGC	3 cut(s)	99, 107, 124
BstKTI	GATC	2 cut(s)	115, 231
BstMBI	GATC	2 cut(s)	112, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	71, 82
BsuRI	GGCC	2 cut(s)	91, 213
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	3 cut(s)	99, 107, 124
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	4 cut(s)	66, 91, 213, 273
CviKI_1	RGCY	4 cut(s)	66, 91, 213, 273
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	2 cut(s)	114, 230
DpnII	GATC	2 cut(s)	112, 228
EaeI	YGGCCR	2 cut(s)	89, 211
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	68
FaiI	YATR	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	3 cut(s)	98, 106, 123
HaeII	RGCGCY	2 cut(s)	108, 125
HaeIII	GGCC	2 cut(s)	91, 213
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	99, 107, 124
Hin6I	GCGC	3 cut(s)	97, 105, 122
HinP1I	GCGC	3 cut(s)	97, 105, 122
HinfI	GANTC	2 cut(s)	146, 241
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	35, 107
Hpy188I	TCNGA	5 cut(s)	145, 151, 164, 240, 246
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HspAI	GCGC	3 cut(s)	97, 105, 122
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	112, 228
LmnI	GCTCC	3 cut(s)	71, 104, 129
LpnPI	CCDG	5 cut(s)	5, 32, 115, 159, 166
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	114, 230
MboI	GATC	2 cut(s)	112, 228
MboII	GAAGA	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	47, 68
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	2 cut(s)	158, 233
MluNI	TGGCCA	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	34, 64, 164, 219, 258
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	71, 82
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	112, 228
NmuCI	GTSAC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	146, 241
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	112, 228
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	47, 68
SetI	ASST	4 cut(s)	56, 68, 156, 269
SfaNI	GCATC	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	158, 233
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	158, 233
TfiI	GAWTC	2 cut(s)	146, 241
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspGWI	ACGGA	2 cut(s)	21, 116
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.