Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8281713.1

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 807

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8281713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggcttatggtcagacgggtacagggaaaacatttactctaggacgactaggagaagaagatacttctgatcgtggaatcatggttcgtgcaatggaggacattttagctgatatatctttagagactgattctgtctctgtctcgtatctgcagctttatatggagaccctccaagacctgctggatccagcaaatgataatattcccattgttgaagatccaaaaactggagatgtttcagtacctagggcaactgttgtagatatcaaggaccagttaagtttcctggagctgttaagagttggtgaagctcatcgcattgccgctaatacaaagttgaatactgaatcttctcgcagtcatgcgattctgatggtaaatgttaagaggtgtgttatgggaagtgaagataatgtttcgagtgaaaatggtgatccttctcacttgaccaagccttctagaccacttgttcggaaaagcaaacttgttgttgtagatttggcaggttcggaacgcatccagaaatcaggtggctatccaacttgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

183

Amino Acids

19.92

Weight (kDa)

4.99

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	189, 497
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	4 cut(s)	182, 195, 215, 431
AfaI	GTAC	2 cut(s)	22, 246
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	218, 343
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	110, 157, 295, 314
AluI	AGCT	4 cut(s)	110, 157, 295, 314
Alw26I	GTCTC	4 cut(s)	119, 142, 148, 161
AlwI	GGATC	4 cut(s)	182, 195, 215, 431
ApeKI	GCWGC	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AspA2I	CCTAGG	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	320, 446
AvaII	GGWCC	1 cut(s)	274
AvrII	CCTAGG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	4 cut(s)	119, 142, 148, 161
BfaI	CTAG	4 cut(s)	41, 50, 249, 462
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	189, 497
BisI	GCNGC	2 cut(s)	155, 327
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	156, 328
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	528
BpmI	CTGGAG	2 cut(s)	252, 311
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	235, 277
Bse3DI	GCAATG	2 cut(s)	99, 321
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	2 cut(s)	99, 321
BseNI	ACTGG	2 cut(s)	235, 277
BseXI	GCAGC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	4 cut(s)	119, 142, 148, 161
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	70, 187, 220, 436
BspACI	CCGC	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	2 cut(s)	189, 497
BspPI	GGATC	4 cut(s)	182, 195, 215, 431
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	99, 321
BsrI	ACTGG	2 cut(s)	235, 277
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	4 cut(s)	70, 187, 220, 436
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	4 cut(s)	73, 190, 223, 439
BstMAI	GTCTC	4 cut(s)	119, 142, 148, 161
BstMBI	GATC	4 cut(s)	70, 187, 220, 436
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	187, 220
BstYI	RGATCY	2 cut(s)	187, 220
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	519
BveI	ACCTGC	2 cut(s)	189, 497
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	21, 245
CviAII	CATG	2 cut(s)	82, 365
CviJI	RGCY	7 cut(s)	5, 110, 157, 295, 314, 457, 537
CviKI_1	RGCY	7 cut(s)	5, 110, 157, 295, 314, 457, 537
CviQI	GTAC	2 cut(s)	21, 245
DpnI	GATC	4 cut(s)	72, 189, 222, 438
DpnII	GATC	4 cut(s)	70, 187, 220, 436
Eco130I	CCWWGG	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	288
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	2 cut(s)	85, 368
FaiI	YATR	7 cut(s)	9, 83, 116, 162, 164, 366, 401
FatI	CATG	2 cut(s)	81, 364
Fnu4HI	GCNGC	2 cut(s)	155, 327
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	155, 327
FspBI	CTAG	4 cut(s)	41, 50, 249, 462
GluI	GCNGC	2 cut(s)	155, 327
GsuI	CTGGAG	2 cut(s)	252, 311
Hin1II	CATG	2 cut(s)	85, 368
HinfI	GANTC	4 cut(s)	78, 131, 350, 370
HphI	GGTGA	2 cut(s)	320, 446
Hpy188I	TCNGA	5 cut(s)	15, 70, 375, 477, 514
Hpy188III	TCNNGA	2 cut(s)	462, 523
HpyAV	CCTTC	2 cut(s)	450, 468
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	92, 154
Hsp92II	CATG	2 cut(s)	85, 368
Kzo9I	GATC	4 cut(s)	70, 187, 220, 436
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	4 cut(s)	41, 50, 249, 462
MalI	GATC	4 cut(s)	72, 189, 222, 438
MboI	GATC	4 cut(s)	70, 187, 220, 436
MboII	GAAGA	5 cut(s)	68, 71, 230, 345, 422
MflI	RGATCY	2 cut(s)	187, 220
MnlI	CCTC	3 cut(s)	91, 182, 384
MseI	TTAA	3 cut(s)	281, 299, 387
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
NdeII	GATC	4 cut(s)	70, 187, 220, 436
NlaIII	CATG	2 cut(s)	85, 368
NlaIV	GGNNCC	1 cut(s)	189
PfeI	GAWTC	4 cut(s)	78, 131, 350, 370
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	156, 328
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	187, 220
RsaI	GTAC	2 cut(s)	22, 246
RsaNI	GTAC	2 cut(s)	21, 245
SaqAI	TTAA	3 cut(s)	281, 299, 387
SatI	GCNGC	2 cut(s)	155, 327
Sau3AI	GATC	4 cut(s)	70, 187, 220, 436
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	9 cut(s)	112, 159, 183, 250, 297, 316, 395, 511, 535
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	274
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	4 cut(s)	41, 50, 249, 462
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	422
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	4 cut(s)	78, 131, 350, 370
Tru1I	TTAA	3 cut(s)	281, 299, 387
Tru9I	TTAA	3 cut(s)	281, 299, 387
TseI	GCWGC	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	4 cut(s)	41, 50, 249, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.