Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Forward (+)

948222 .. 950870

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATCGCAGAGGTCCCCATGGTTGCCATCGACTTCGTTGAGATCGAAATCAACTCCTCTCGCCTCGCCCTCATCCCCTTGACTACGGCCTCGGCCTCATCCACACCGTCGTCCCCGTCGATTTCTCCGGCGCCTCCGGTTATGAAGCTTCCAAATAGAGTTGCAAGTAGGGATTATCATTGTGAAGTTGCGAAGGGAGCCTCACCGCCTGCAAGAGTTCGACCAAGAAATGATGAGGATCAAATTTCTGATTCGGATTATGACGACAGTGTTGAGGTCCAGCTAGAGAGTGTATTGAATGGAAATAATGGGACAGTCATGGCTTACGGTCAACCTGGTACGGGGAAGATTTACACACTTGGCAGGCGGGTTGTGATGATGCATCGGAGTGTGCTGTACATGGAATGTATACAAGATTTGCTTGCACTAGAAAAGACTAATATTCCCATTCACGAGGACCCTAAGACCGGTAATCCGGTGAGCCTCTTAGCAAGGATCGATACAAAGATTTGGGAGTCTCAAGTTGGAGGATCATTCACGGTGACTAGGGACTCTAGCGAGCCTCTTGGCATGGGTACAAAATTGTCGTCACTTGACCTCAAGGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

203

Amino Acids

22.03

Weight (kDa)

4.99

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	83 - 122	1.6e-07	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	2 cut(s)	206, 367
AclWI	GGATC	3 cut(s)	246, 503, 538
AcsI	RAATTY	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	3 cut(s)	340, 398, 577
AfiI	CCNNNNNNNGG	2 cut(s)	341, 467
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	148, 283
AluI	AGCT	2 cut(s)	148, 283
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	246, 503, 538
AoxI	GGCC	2 cut(s)	87, 93
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AsiGI	ACCGGT	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	13, 277, 457
AsuHPI	GGTGA	3 cut(s)	195, 490, 553
AvaII	GGWCC	3 cut(s)	13, 277, 457
BanI	GGYRCC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	452
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	5 cut(s)	284, 428, 546, 555, 610
BfoI	RGCGCY	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	3 cut(s)	13, 277, 457
BmgT120I	GGNCC	3 cut(s)	13, 277, 457
BmiI	GGNNCC	4 cut(s)	15, 132, 199, 459
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	369, 391
BpuEI	CTTGAG	2 cut(s)	504, 584
Bsa29I	ATCGAT	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	47, 237
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	18, 90
BsaWI	WCCGGW	3 cut(s)	136, 467, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 467
Bse118I	RCCGGY	1 cut(s)	467
Bse8I	GATNNNNATC	2 cut(s)	47, 237
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	18, 90
BseGI	GGATG	2 cut(s)	72, 98
BseJI	GATNNNNATC	2 cut(s)	47, 237
BseLI	CCNNNNNNNGG	2 cut(s)	341, 467
BseRI	GAGGAG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	89, 95
BshNI	GGYRCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	4 cut(s)	128, 137, 468, 476
BslFI	GGGAC	3 cut(s)	97, 325, 563
BslI	CCNNNNNNNGG	2 cut(s)	341, 467
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	3 cut(s)	97, 325, 563
BsnI	GGCC	2 cut(s)	89, 95
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	3, 42, 238, 495, 530
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	206, 367
BspANI	GGCC	2 cut(s)	89, 95
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	15, 132, 199, 459
BspPI	GGATC	3 cut(s)	246, 503, 538
BspT107I	GGYRCC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	18, 90
BssMI	GATC	5 cut(s)	3, 42, 238, 495, 530
BssNAI	GTATAC	1 cut(s)	410
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	5 cut(s)	108, 269, 316, 329, 541
BstACI	GRCGYC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	210, 365, 423, 560
BstDEI	CTNAG	2 cut(s)	462, 487
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	72, 98
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	6, 45, 241, 498, 533
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	5 cut(s)	3, 42, 238, 495, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstZ17I	GTATAC	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	89, 95
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	72, 98
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	4 cut(s)	210, 365, 423, 560
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	13, 277, 457
ClaI	ATCGAT	1 cut(s)	498
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	339, 397, 576
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	4 cut(s)	19, 319, 400, 571
CviJI	RGCY	8 cut(s)	89, 95, 148, 200, 283, 323, 483, 562
CviKI_1	RGCY	8 cut(s)	89, 95, 148, 200, 283, 323, 483, 562
CviQI	GTAC	3 cut(s)	339, 397, 576
DdeI	CTNAG	2 cut(s)	462, 487
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	5 cut(s)	5, 44, 240, 497, 532
DpnII	GATC	5 cut(s)	3, 42, 238, 495, 530
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	3 cut(s)	13, 277, 457
EcoO109I	RGGNCCY	2 cut(s)	13, 457
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	22, 322, 403, 574
FaiI	YATR	7 cut(s)	20, 143, 261, 320, 401, 410, 572
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	3 cut(s)	97, 325, 563
FatI	CATG	4 cut(s)	18, 318, 399, 570
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	409
FokI	GGATG	2 cut(s)	59, 85
FspBI	CTAG	5 cut(s)	284, 428, 546, 555, 610
GlaI	GCGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	89, 95
HapII	CCGG	4 cut(s)	128, 137, 468, 476
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	22, 322, 403, 574
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	251, 515, 551
HpaII	CCGG	4 cut(s)	128, 137, 468, 476
HphI	GGTGA	3 cut(s)	195, 490, 553
Hpy166II	GTNNAC	2 cut(s)	332, 410
Hpy188I	TCNGA	3 cut(s)	250, 256, 387
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	2 cut(s)	332, 410
Hpy99I	CGWCG	2 cut(s)	112, 121
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	5 cut(s)	108, 269, 316, 329, 541
HpyCH4V	TGCA	4 cut(s)	164, 212, 382, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	462, 487
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	22, 322, 403, 574
HspAI	GCGC	1 cut(s)	131
KasI	GGCGCC	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	3, 42, 238, 495, 530
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	9 cut(s)	141, 150, 222, 293, 321, 348, 349, 481, 489
LweI	GCATC	2 cut(s)	369, 391
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	5 cut(s)	284, 428, 546, 555, 610
MaeIII	GTNAC	2 cut(s)	541, 588
MalI	GATC	5 cut(s)	5, 44, 240, 497, 532
MboI	GATC	5 cut(s)	3, 42, 238, 495, 530
MboII	GAAGA	1 cut(s)	358
MluCI	AATT	2 cut(s)	243, 581
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	524, 545
MmeI	TCCRAC	1 cut(s)	505
Mph1103I	ATGCAT	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	4 cut(s)	128, 137, 468, 476
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	197
NarI	GGCGCC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	5 cut(s)	3, 42, 238, 495, 530
NlaIII	CATG	4 cut(s)	22, 322, 403, 574
NlaIV	GGNNCC	4 cut(s)	15, 132, 199, 459
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	541, 588
NsiI	ATGCAT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 116
PfeI	GAWTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	467
PleI	GAGTC	2 cut(s)	523, 545
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	2 cut(s)	523, 545
PpuMI	RGGWCCY	2 cut(s)	13, 457
Psp5II	RGGWCCY	2 cut(s)	13, 457
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	4 cut(s)	15, 132, 199, 459
PspPI	GGNCC	3 cut(s)	13, 277, 457
PspPPI	RGGWCCY	2 cut(s)	13, 457
RsaI	GTAC	3 cut(s)	340, 398, 577
RsaNI	GTAC	3 cut(s)	339, 397, 576
RseI	CAYNNNNRTG	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	3, 42, 238, 495, 530
Sau96I	GGNCC	3 cut(s)	13, 277, 457
SchI	GAGTC	2 cut(s)	524, 545
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	6 cut(s)	15, 150, 279, 285, 337, 600
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	369, 391
SfoI	GGCGCC	1 cut(s)	132
SinI	GGWCC	3 cut(s)	13, 277, 457
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	519, 599
SmoI	CTYRAG	2 cut(s)	519, 599
Sse9I	AATT	2 cut(s)	243, 581
SsiI	CCGC	2 cut(s)	206, 367
SspDI	GGCGCC	1 cut(s)	130
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	5 cut(s)	284, 428, 546, 555, 610
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	5 cut(s)	108, 269, 316, 329, 541
TaqI	TCGA	5 cut(s)	30, 45, 119, 220, 498
TasI	AATT	2 cut(s)	243, 581
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	541, 588
Tsp45I	GTSAC	2 cut(s)	541, 588
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	3 cut(s)	13, 277, 457
XapI	RAATTY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	5 cut(s)	284, 428, 546, 555, 610
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.