Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1310

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggaggggaaatcgtaccagggtgaaaatccgttaaatgagggcacgactacctcaagtttgagctccgcgacaccgacgcgagcgtggccaatgcgctccggcgctgatgatcgccgaggtcccacgagggattatcattatgaagttgcgaagggggcctcactgcctgcaaggttgattctaatgttgctcggcaaacgacgtcgtctgttcgctccaatccaacgtcttcttccacttcacagcgctctgtcactcccacttctcggattccgacctccaattccgagttttagcaggagtgtattgaatggaaataatgggacagtcatggcttacggtcaaattggtacagggaagatttacacacttggcaggctgggttgtgatgatgcatcggagcgtggtattatggctagagctttgcaggacattattttgagtacggctccggagtctgatacagtggaagtttcatacttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

163

Amino Acids

17.72

Weight (kDa)

9.66

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	71, 82
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	3 cut(s)	17, 355, 448
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	2 cut(s)	66, 425
AluI	AGCT	2 cut(s)	66, 425
Alw21I	GWGCWC	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	454
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	2 cut(s)	89, 159
AspLEI	GCGC	3 cut(s)	99, 107, 251
AspS9I	GGNCC	2 cut(s)	122, 159
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	108, 252
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 159
BmiI	GGNNCC	3 cut(s)	124, 160, 453
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	385, 407
BpiI	GAAGAC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpuEI	CTTGAG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	19, 118
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	19, 118
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	2 cut(s)	71, 82
BshFI	GGCC	2 cut(s)	91, 161
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	102, 455
BslFI	GGGAC	2 cut(s)	108, 340
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	108, 340
BsnI	GGCC	2 cut(s)	91, 161
Bsp1286I	GDGCHC	2 cut(s)	47, 68
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	91, 161
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	71, 82
BspLI	GGNNCC	3 cut(s)	124, 160, 453
BssECI	CCNNGG	2 cut(s)	19, 118
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	331, 344, 469
BstACI	GRCGYC	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	84, 171, 380
BstFNI	CGCG	2 cut(s)	71, 82
BstH2I	RGCGCY	2 cut(s)	108, 252
BstHHI	GCGC	3 cut(s)	99, 107, 251
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 158
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	71, 82
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	91, 161
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 474
Cac8I	GCNNGC	3 cut(s)	84, 171, 380
CfoI	GCGC	3 cut(s)	99, 107, 251
Cfr13I	GGNCC	2 cut(s)	122, 159
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	16, 354, 447
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	8 cut(s)	66, 91, 161, 338, 382, 419, 425, 452
CviKI_1	RGCY	8 cut(s)	66, 91, 161, 338, 382, 419, 425, 452
CviQI	GTAC	3 cut(s)	16, 354, 447
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	122
Eco47III	AGCGCT	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	2 cut(s)	122, 159
EcoRII	CCWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	144, 335, 416, 481
FaqI	GGGAC	2 cut(s)	108, 340
FatI	CATG	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	3 cut(s)	98, 106, 250
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	108, 252
HaeIII	GGCC	2 cut(s)	91, 161
HapII	CCGG	2 cut(s)	102, 455
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	99, 107, 251
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	3 cut(s)	97, 105, 249
HinP1I	GCGC	3 cut(s)	97, 105, 249
HinfI	GANTC	3 cut(s)	181, 273, 458
HpaII	CCGG	2 cut(s)	102, 455
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	5 cut(s)	272, 278, 291, 403, 463
Hpy188III	TCNNGA	1 cut(s)	455
Hpy99I	CGWCG	3 cut(s)	82, 207, 210
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	331, 344, 469
HpyCH4IV	ACGT	2 cut(s)	205, 229
HpyCH4V	TGCA	4 cut(s)	173, 398, 430, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 158
HpySE526I	ACGT	2 cut(s)	205, 229
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	3 cut(s)	97, 105, 249
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	5 cut(s)	71, 104, 223, 403, 457
LweI	GCATC	2 cut(s)	385, 407
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	205, 229
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	224, 227, 373
MhlI	GDGCHC	2 cut(s)	47, 68
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	2 cut(s)	285, 348
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	250, 301
MnlI	CCTC	6 cut(s)	34, 64, 113, 123, 172, 291
Mox20I	TGGCCA	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	2 cut(s)	102, 455
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	71, 82
MwoI	GCNNNNNNNGC	2 cut(s)	88, 158
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	3 cut(s)	124, 160, 453
NmeAIII	GCCGAG	2 cut(s)	143, 174
NmuCI	GTSAC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	181, 273
PflFI	GACNNNGTC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	124, 160, 453
PspPI	GGNCC	2 cut(s)	122, 159
PspPPI	RGGWCCY	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	207
RsaI	GTAC	3 cut(s)	17, 355, 448
RsaNI	GTAC	3 cut(s)	16, 354, 447
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	122, 159
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	47, 68
SetI	ASST	8 cut(s)	56, 68, 124, 179, 208, 232, 283, 427
SfaNI	GCATC	2 cut(s)	385, 407
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	285, 348
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	331, 344, 469
TaiI	ACGT	2 cut(s)	208, 232
TasI	AATT	2 cut(s)	285, 348
TfiI	GAWTC	2 cut(s)	181, 273
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	171, 474
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	159, 468
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	171, 474
Tth111I	GACNNNGTC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	122
XspI	CTAG	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.