Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

31948727 .. 31951480

Gene Structure 2754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGGGGAAATCGTACCAGGGTGAAAATCCGTTAAATGAGGGCACGACTACCTCAAGTTTGAGCTCCGCGACACCGACGCGAGCGTGGCCAATGCGCTCCGGCGCTGATGATCGCCGAGGTCCCACGAGGGATTATCATTATGAAGTTGCGAAGGGGGCCTCACTGCCTGCAAGGTTGATTCTAATGTTGCTCGGCAAACGACGTCGTCTGTTCGCTCCAATCCAACGTCTTCTTCCACTTCACAGCGCTCCGTCACTCCCACTTCTCGGATTCCGACCTCCAATTCCGAGTTTTAGCAGGAGTGTATTGAATGGAAATAATGGGACAGTCATGGCTTACGGTCAAATTGGTACAGGGAAGATTTACACACTTGGCAGGCTGGGTTGTGATGATGCATCGGAGCGTGGTATTATGGCTAGAGCTTTGCAGGACATTATTTTGAGTACGGCTCCGGAGTCTGATACAGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTGCTTGCACTAGAAAAGACTAATATTCCCATTCACGAGGACCCTAAGGCCAGTGAGGTGTCACTTCCTGGTGCTTCGGTACCTCTTAGCAAGGATACAAAGATTTGGGAGTCTCAAGTTGGAGGATCATTCACAGTGACTAGGGACTCTAGCGAGCCTCTTGGCATGGGTACAAAACTATCGTCACTTGACCTCAAGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

239

Amino Acids

25.92

Weight (kDa)

6.33

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	100 - 197	6e-20	Kinesin motor domain
Microtub_bd	PF16796	101 - 173	3.6e-07	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	2 cut(s)	71, 82
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	6 cut(s)	17, 355, 448, 494, 594, 685
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	269, 712
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	18, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	3 cut(s)	66, 425, 490
AluI	AGCT	3 cut(s)	66, 425, 490
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	454
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	3 cut(s)	89, 159, 561
ApeKI	GCWGC	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	3 cut(s)	99, 107, 251
AspS9I	GGNCC	3 cut(s)	122, 159, 553
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	122, 553
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	2 cut(s)	127, 548
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	499
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	20, 582
BciVI	GTATCC	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	5 cut(s)	420, 524, 654, 663, 718
BfoI	RGCGCY	2 cut(s)	108, 252
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	20, 582
Bme18I	GGWCC	2 cut(s)	122, 553
BmgT120I	GGNCC	3 cut(s)	122, 159, 553
BmiI	GGNNCC	5 cut(s)	124, 160, 453, 555, 594
BmrFI	CCNGG	2 cut(s)	20, 582
BmsI	GCATC	2 cut(s)	385, 407
BpiI	GAAGAC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpuEI	CTTGAG	3 cut(s)	40, 612, 692
BsaHI	GRCGYC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	19, 118
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 712
Bse1I	ACTGG	1 cut(s)	564
Bse21I	CCTNAGG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	20, 582
BseDI	CCNNGG	2 cut(s)	19, 118
BseLI	CCNNNNNNNGG	2 cut(s)	269, 712
BseNI	ACTGG	1 cut(s)	564
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	2 cut(s)	71, 82
BshFI	GGCC	3 cut(s)	91, 161, 563
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	102, 455
BslFI	GGGAC	3 cut(s)	108, 340, 671
BslI	CCNNNNNNNGG	2 cut(s)	269, 712
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	3 cut(s)	108, 340, 671
BsnI	GGCC	3 cut(s)	91, 161, 563
Bsp1286I	GDGCHC	2 cut(s)	47, 68
Bsp13I	TCCGGA	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	112, 638
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	91, 161, 563
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	71, 82
BspLI	GGNNCC	5 cut(s)	124, 160, 453, 555, 594
BspPI	GGATC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	2 cut(s)	19, 118
BssMI	GATC	2 cut(s)	112, 638
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	2 cut(s)	127, 548
Bst2BI	CACGAG	2 cut(s)	127, 548
Bst2UI	CCWGG	2 cut(s)	20, 582
Bst4CI	ACNGT	4 cut(s)	331, 344, 469, 649
BstACI	GRCGYC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	5 cut(s)	84, 171, 380, 519, 668
BstDEI	CTNAG	2 cut(s)	558, 599
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstFNI	CGCG	2 cut(s)	71, 82
BstH2I	RGCGCY	2 cut(s)	108, 252
BstHHI	GCGC	3 cut(s)	99, 107, 251
BstKTI	GATC	2 cut(s)	115, 641
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	112, 638
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 158
BstNI	CCWGG	2 cut(s)	20, 582
BstSCI	CCNGG	2 cut(s)	18, 580
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	71, 82
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	224
Bsu36I	CCTNAGG	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	91, 161, 563
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	4 cut(s)	164, 474, 571, 654
Cac8I	GCNNGC	5 cut(s)	84, 171, 380, 519, 668
CfoI	GCGC	3 cut(s)	99, 107, 251
Cfr13I	GGNCC	3 cut(s)	122, 159, 553
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	6 cut(s)	16, 354, 447, 493, 593, 684
CviAII	CATG	3 cut(s)	334, 496, 679
CviQI	GTAC	6 cut(s)	16, 354, 447, 493, 593, 684
DdeI	CTNAG	2 cut(s)	558, 599
DpnI	GATC	2 cut(s)	114, 640
DpnII	GATC	2 cut(s)	112, 638
EaeI	YGGCCR	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	122, 553
Eco47III	AGCGCT	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	3 cut(s)	122, 159, 553
EcoRII	CCWGG	2 cut(s)	18, 580
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	337, 499, 682
FaiI	YATR	7 cut(s)	144, 335, 416, 481, 497, 506, 680
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	108, 340, 671
FatI	CATG	3 cut(s)	333, 495, 678
Fnu4HI	GCNGC	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	5 cut(s)	420, 524, 654, 663, 718
GlaI	GCGC	3 cut(s)	98, 106, 250
GluI	GCNGC	1 cut(s)	488
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	108, 252
HaeIII	GGCC	3 cut(s)	91, 161, 563
HapII	CCGG	2 cut(s)	102, 455
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	99, 107, 251
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	337, 499, 682
Hin6I	GCGC	3 cut(s)	97, 105, 249
HinP1I	GCGC	3 cut(s)	97, 105, 249
HinfI	GANTC	6 cut(s)	181, 273, 458, 500, 623, 659
HpaII	CCGG	2 cut(s)	102, 455
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	5 cut(s)	272, 278, 291, 403, 463
Hpy188III	TCNNGA	2 cut(s)	455, 548
Hpy99I	CGWCG	3 cut(s)	82, 207, 210
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	4 cut(s)	331, 344, 469, 649
HpyCH4IV	ACGT	2 cut(s)	205, 229
HpyCH4V	TGCA	5 cut(s)	173, 398, 430, 487, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 158
HpyF3I	CTNAG	2 cut(s)	558, 599
HpySE526I	ACGT	2 cut(s)	205, 229
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	337, 499, 682
HspAI	GCGC	3 cut(s)	97, 105, 249
Kpn2I	TCCGGA	1 cut(s)	454
KpnI	GGTACC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	112, 638
LmnI	GCTCC	6 cut(s)	71, 104, 223, 256, 403, 457
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	385, 407
MaeI	CTAG	5 cut(s)	420, 524, 654, 663, 718
MaeII	ACGT	2 cut(s)	205, 229
MaeIII	GTNAC	4 cut(s)	255, 573, 649, 696
MalI	GATC	2 cut(s)	114, 640
MboI	GATC	2 cut(s)	112, 638
MboII	GAAGA	3 cut(s)	224, 227, 373
MhlI	GDGCHC	2 cut(s)	47, 68
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	2 cut(s)	285, 348
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	3 cut(s)	467, 632, 653
MmeI	TCCRAC	3 cut(s)	250, 301, 613
Mox20I	TGGCCA	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	102, 455
MspR9I	CCNGG	2 cut(s)	20, 582
MvaI	CCWGG	2 cut(s)	20, 582
MvnI	CGCG	2 cut(s)	71, 82
MwoI	GCNNNNNNNGC	2 cut(s)	88, 158
NdeII	GATC	2 cut(s)	112, 638
NlaIII	CATG	3 cut(s)	337, 499, 682
NlaIV	GGNNCC	5 cut(s)	124, 160, 453, 555, 594
NmeAIII	GCCGAG	2 cut(s)	143, 174
NmuCI	GTSAC	4 cut(s)	255, 573, 649, 696
NsiI	ATGCAT	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	181, 273, 500
PflFI	GACNNNGTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	3 cut(s)	466, 631, 653
PpsI	GAGTC	3 cut(s)	466, 631, 653
PpuMI	RGGWCCY	2 cut(s)	122, 553
Psp124BI	GAGCTC	1 cut(s)	68
Psp5II	RGGWCCY	2 cut(s)	122, 553
Psp6I	CCWGG	2 cut(s)	18, 580
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	18, 580
PspN4I	GGNNCC	5 cut(s)	124, 160, 453, 555, 594
PspPI	GGNCC	3 cut(s)	122, 159, 553
PspPPI	RGGWCCY	2 cut(s)	122, 553
PsyI	GACNNNGTC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	6 cut(s)	17, 355, 448, 494, 594, 685
RsaNI	GTAC	6 cut(s)	16, 354, 447, 493, 593, 684
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	112, 638
Sau96I	GGNCC	3 cut(s)	122, 159, 553
SchI	GAGTC	3 cut(s)	467, 632, 653
ScrFI	CCNGG	2 cut(s)	20, 582
SduI	GDGCHC	2 cut(s)	47, 68
SfaNI	GCATC	2 cut(s)	385, 407
SinI	GGWCC	2 cut(s)	122, 553
SmlI	CTYRAG	3 cut(s)	55, 627, 707
SmoI	CTYRAG	3 cut(s)	55, 627, 707
Sse9I	AATT	2 cut(s)	285, 348
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	5 cut(s)	420, 524, 654, 663, 718
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	18, 580
TaaI	ACNGT	4 cut(s)	331, 344, 469, 649
TaiI	ACGT	2 cut(s)	208, 232
TasI	AATT	2 cut(s)	285, 348
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	181, 273, 500
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	4 cut(s)	171, 474, 571, 654
TseFI	GTSAC	4 cut(s)	255, 573, 649, 696
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	4 cut(s)	255, 573, 649, 696
TspDTI	ATGAA	2 cut(s)	159, 468
TspGWI	ACGGA	2 cut(s)	21, 243
TspRI	CASTG	4 cut(s)	171, 474, 571, 654
Tth111I	GACNNNGTC	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	122, 553
XagI	CCTNNNNNAGG	1 cut(s)	710
XspI	CTAG	5 cut(s)	420, 524, 654, 663, 718
ZraI	GACGTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.