Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Reverse (-)

62382866 .. 62386241

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCGGCAAGTGCTCGGCAAACGACGTCGTCAAACGCTCGTCCACTCGGTGCTCGTCACTCCAACTTCTCGGATTCCAACCTCCAATTCCGAGTCCAATTCCGAGTTTCGCAAGGGAAGATTTACACACTTGGCAGGTTGGGTTGTGATGATGCATCGGAGTGTGGTATTATGGTTAGAGCTTTGGAGGACATTATTTTGAGTACGGCTCCGGAGTTTGATACGGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTGCTTGCACTAGAAAAGACTAATATTCCCATTCACGAGGACCCCAAGACCGGTGAGGTGTCACTTTACGGTGCTTCGCGGGCTACCCATGACCATTTTGAATACCAGGATGAAATTTGGGGTGGGTCCTGGCAGACAAGCCTGAGATCCATAGACCAAAAGTACCCCCGATGTTCACTGCCCCACCAACGAACAAATTGGAAACATCATGCAAGTCAATTTCAAGTCATCCACCCCACCCCACAAGACATCAACTTCACTGCAACGAAACTCCAATTCAACTTAGATCAAGCCAGAATTAACACTCACCACCCAAACCTTGTTGCGGCGAAGCGGTATAAGTCACTGTTCTTCTCCCGTGCAACCACCACCACCACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

217

Amino Acids

24.67

Weight (kDa)

7.16

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	38 - 122	3.6e-09	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	126
AccII	CGCG	1 cut(s)	349
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	3 cut(s)	349, 596, 604
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	205, 251, 434
AfiI	CCNNNNNNNGG	2 cut(s)	320, 595
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	371, 494, 550
AjnI	CCWGG	2 cut(s)	375, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	182, 247
AluI	AGCT	2 cut(s)	182, 247
Alw21I	GWGCWC	2 cut(s)	16, 55
AlwI	GGATC	1 cut(s)	411
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	384
AsiGI	ACCGGT	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	310, 396
AsuHPI	GGTGA	2 cut(s)	335, 569
AvaII	GGWCC	2 cut(s)	310, 396
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	16, 55
BbvI	GCAGC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	377, 400
BfaI	CTAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	245, 597
BlsI	GCNGC	2 cut(s)	246, 598
Bme1390I	CCNGG	2 cut(s)	377, 400
Bme18I	GGWCC	2 cut(s)	310, 396
BmgT120I	GGNCC	2 cut(s)	310, 396
BmiI	GGNNCC	3 cut(s)	210, 312, 397
BmrFI	CCNGG	2 cut(s)	377, 400
BmsI	GCATC	2 cut(s)	142, 164
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BsaHI	GRCGYC	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	211, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 595
Bse118I	RCCGGY	2 cut(s)	4, 320
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	377, 400
BseGI	GGATG	2 cut(s)	385, 498
BseLI	CCNNNNNNNGG	2 cut(s)	320, 595
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	16, 55
BsiSI	CCGG	3 cut(s)	5, 212, 321
BslI	CCNNNNNNNGG	2 cut(s)	320, 595
Bsp1286I	GDGCHC	2 cut(s)	16, 55
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	416, 556
BspACI	CCGC	3 cut(s)	349, 596, 604
BspCNI	CTCAG	1 cut(s)	405
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	210, 312, 397
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	411
BsrFI	RCCGGY	2 cut(s)	4, 320
BsrGI	TGTACA	1 cut(s)	249
BssAI	RCCGGY	2 cut(s)	4, 320
BssMI	GATC	2 cut(s)	416, 556
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	377, 400
Bst4CI	ACNGT	3 cut(s)	226, 341, 618
BstACI	GRCGYC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	6, 276, 351
BstDEI	CTNAG	2 cut(s)	413, 553
BstF5I	GGATG	2 cut(s)	385, 498
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	419, 559
BstMBI	GATC	2 cut(s)	416, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	377, 400
BstSCI	CCNGG	2 cut(s)	375, 398
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	385, 498
BtsI	GCAGTG	2 cut(s)	446, 528
BtsIMutI	CAGTG	3 cut(s)	446, 528, 614
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	6, 276, 351
Cfr10I	RCCGGY	2 cut(s)	4, 320
Cfr13I	GGNCC	2 cut(s)	310, 396
Csp6I	GTAC	3 cut(s)	204, 250, 433
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	3 cut(s)	253, 359, 479
CviJI	RGCY	6 cut(s)	182, 209, 247, 353, 411, 563
CviKI_1	RGCY	6 cut(s)	182, 209, 247, 353, 411, 563
CviQI	GTAC	3 cut(s)	204, 250, 433
DdeI	CTNAG	2 cut(s)	413, 553
DpnI	GATC	2 cut(s)	418, 558
DpnII	GATC	2 cut(s)	416, 556
DraIII	CACNNNGTG	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	310, 396
EcoO109I	RGGNCCY	2 cut(s)	310, 396
EcoRII	CCWGG	2 cut(s)	375, 398
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	3 cut(s)	256, 362, 482
FaiI	YATR	8 cut(s)	173, 238, 254, 263, 360, 422, 480, 609
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	3 cut(s)	252, 358, 478
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	245, 597
FokI	GGATG	2 cut(s)	392, 485
Fsp4HI	GCNGC	2 cut(s)	245, 597
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	2 cut(s)	245, 597
HapII	CCGG	3 cut(s)	5, 212, 321
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	256, 362, 482
HinfI	GANTC	3 cut(s)	74, 93, 257
HpaII	CCGG	3 cut(s)	5, 212, 321
HphI	GGTGA	2 cut(s)	335, 569
Hpy166II	GTNNAC	2 cut(s)	44, 446
Hpy188I	TCNGA	4 cut(s)	73, 92, 104, 160
Hpy188III	TCNNGA	2 cut(s)	212, 305
Hpy8I	GTNNAC	2 cut(s)	44, 446
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyCH4III	ACNGT	3 cut(s)	226, 341, 618
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	155, 244, 278, 482, 533, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	413, 553
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	256, 362, 482
Kpn2I	TCCGGA	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	416, 556
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	142, 164
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	3 cut(s)	56, 330, 612
MalI	GATC	2 cut(s)	418, 558
MboI	GATC	2 cut(s)	416, 556
MboII	GAAGA	2 cut(s)	130, 613
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	16, 55
MluCI	AATT	7 cut(s)	86, 98, 384, 466, 488, 545, 567
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	87, 102
MnlI	CCTC	4 cut(s)	92, 181, 301, 319
Mph1103I	ATGCAT	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	211
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	3 cut(s)	5, 212, 321
MspR9I	CCNGG	2 cut(s)	377, 400
MvaI	CCWGG	2 cut(s)	377, 400
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	2 cut(s)	416, 556
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	256, 362, 482
NlaIV	GGNNCC	3 cut(s)	210, 312, 397
NmuCI	GTSAC	3 cut(s)	56, 330, 612
NsiI	ATGCAT	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	74, 257
PflFI	GACNNNGTC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	246, 598
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	2 cut(s)	310, 396
Psp5II	RGGWCCY	2 cut(s)	310, 396
Psp6I	CCWGG	2 cut(s)	375, 398
PspGI	CCWGG	2 cut(s)	375, 398
PspN4I	GGNNCC	3 cut(s)	210, 312, 397
PspPI	GGNCC	2 cut(s)	310, 396
PspPPI	RGGWCCY	2 cut(s)	310, 396
PsuI	RGATCY	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	3 cut(s)	205, 251, 434
RsaNI	GTAC	3 cut(s)	204, 250, 433
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	2 cut(s)	245, 597
Sau3AI	GATC	2 cut(s)	416, 556
Sau96I	GGNCC	2 cut(s)	310, 396
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	377, 400
SduI	GDGCHC	2 cut(s)	16, 55
SetI	ASST	7 cut(s)	29, 84, 140, 184, 249, 330, 591
SfaNI	GCATC	2 cut(s)	142, 164
SinI	GGWCC	2 cut(s)	310, 396
SmiMI	CAYNNNNRTG	1 cut(s)	160
Sse9I	AATT	7 cut(s)	86, 98, 384, 466, 488, 545, 567
SsiI	CCGC	3 cut(s)	349, 596, 604
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	375, 398
TaaI	ACNGT	3 cut(s)	226, 341, 618
TaiI	ACGT	1 cut(s)	29
TasI	AATT	7 cut(s)	86, 98, 384, 466, 488, 545, 567
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	74, 257
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	3 cut(s)	453, 535, 621
TseFI	GTSAC	3 cut(s)	56, 330, 612
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	3 cut(s)	56, 330, 612
TspDTI	ATGAA	2 cut(s)	225, 396
TspRI	CASTG	3 cut(s)	453, 535, 621
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	310, 396
XapI	RAATTY	1 cut(s)	384
XspI	CTAG	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.