Rroxscaffold_2G00076710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001912
Physical Location & Seq
Forward (+)
462383 .. 472350
9968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076710.1

Sequence Viewer

Length: 237 bp
ATGATCGCCGAGGTCCCCACGGCCGCCATCGACTTCGTTGAGATCGAAATCAACTCCTCTCGCCTCGCCCTCATCCCCTTGACTACGGCCTCGGCCTCATCCACACCGTCGTCCCCGTCGATTTCTCCGGCGCTCCGATTTGGGAGTCTCAAGTTGGAGGATCATTCACAAGTGACTAGGGACTCTAGCGAGCCTCTTGGCATGGCTGCTCTACGAAAACTGAAATCCAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.28

Weight (kDa)

6.72

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 168
AoxI GGCC 3 cut(s) 21, 87, 93
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 35
BceAI ACGGC 2 cut(s) 36, 102
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 177, 186
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 2 cut(s) 24, 207
BlsI GCNGC 2 cut(s) 25, 208
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 9, 18, 90
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 9, 18, 90
BseGI GGATG 2 cut(s) 72, 98
BseJI GATNNNNATC 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 23, 89, 95
BsiEI CGRYCG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 97, 194
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 97, 194
BsnI GGCC 3 cut(s) 23, 89, 95
Bsp143I GATC 3 cut(s) 3, 42, 160
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 23, 89, 95
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 168
BssECI CCNNGG 3 cut(s) 9, 18, 90
BssMI GATC 3 cut(s) 3, 42, 160
Bst4CI ACNGT 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 72, 98
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 3 cut(s) 6, 45, 163
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 3, 42, 160
BstMCI CGRYCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 23, 89, 95
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 72, 98
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 23, 89, 95, 193, 206
CviKI_1 RGCY 5 cut(s) 23, 89, 95, 193, 206
DpnI GATC 3 cut(s) 5, 44, 162
DpnII GATC 3 cut(s) 3, 42, 160
EaeI YGGCCR 1 cut(s) 21
EagI CGGCCG 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 13
Eco52I CGGCCG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 13
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FaqI GGGAC 2 cut(s) 97, 194
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 24, 207
FokI GGATG 2 cut(s) 59, 85
Fsp4HI GCNGC 2 cut(s) 24, 207
FspBI CTAG 2 cut(s) 177, 186
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 24, 207
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 3 cut(s) 23, 89, 95
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 2 cut(s) 145, 182
HpaII CCGG 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 112, 121
HpyCH4III ACNGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 3 cut(s) 3, 42, 160
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 2 cut(s) 177, 186
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 5, 44, 162
MboI GATC 3 cut(s) 3, 42, 160
MlyI GAGTC 2 cut(s) 154, 176
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 8 cut(s) 4, 67, 74, 80, 100, 106, 151, 204
MspI CCGG 1 cut(s) 128
NdeII GATC 3 cut(s) 3, 42, 160
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 2 cut(s) 34, 71
NmuCI GTSAC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 116
PkrI GCNGC 2 cut(s) 25, 208
PleI GAGTC 2 cut(s) 153, 176
PpsI GAGTC 2 cut(s) 153, 176
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
SatI GCNGC 2 cut(s) 24, 207
Sau3AI GATC 3 cut(s) 3, 42, 160
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 154, 176
SetI ASST 1 cut(s) 15
SinI GGWCC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 177, 186
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 30, 45, 119
TauI GCSGC 1 cut(s) 26
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 13
XspI CTAG 2 cut(s) 177, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.