Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Forward (+)

14130724 .. 14140034

Gene Structure 9311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTATGAAGAGAAAATAGCAAAGTTGATGAAGCAGCTAGAAGATGAGCATACTCGTTATGGAAGCACAGAGGATCAGTTAGATGCGATGAGGAAGCTTCTGACTGATGGCCAGAAGACTATTCAGCGACATGAGATGGAACATTCTACATATCAAAAAGCACTTGCTGACACAACTCAGATGTATGAGAGGAAAATAGCCGAGCTAATGGAGCAATTGGAAGATGAGCATTCCCGTTTTGAAGATTTAAAAGAACAAGTTAATTTGGCGAAGAAGCTACGTCATCAACAAAGTTCAATGAAGGGGAAGAAGGAGAGCGATGAACTTAGAGTGAAGTTACAAGACATGAAGCAGCTGCACGAATCAACTCTAAACGAATTTCAGTCCTTGAAATCAGACTATTCTGATCTATCAGAAGAGAAGGCTAGACTAGATAAAGAACTTCAAGATATGAAGCAAAGACTTCTATTGGAAGAGAAGAAGAGGAAAACTATAGAGAATGAGCTGGTCATGCTAAAGAAGGATGTACCAGAGAAAGAAGATGATTTTGTGGACAAGAAATCATATATGAAGGAAAATATATATAAAGGGTCTTCTGCTTTGGGGACTCCAATGGGTTTACACAATTCAAATCCATCAAGGGAGTTGCTATCTAGCCCGAGGGAGACACCTTCTAATCAGAGGGCTACAATTGCAAAAATATGTGAAGAAGTTGGGCTTCAAAAGATTGTACAACTGATGACATCTGATGATTTAGATGTCCAAACCCATGCTGTGAAGATGGTAGCCAATCTTGCAGCTGAAGATATGAATCAGGAAAAGATAATGGAGGAAGGTGGTCTAGATGCTTTGCTTATGCTGTTGCAATCCTCACAAAATACAACTATTCTTAGAGTGGCTTCTGGAGCAATTGCCAATTTGGCAATGAATGAGGTAAATCAAGGTTTAATTATGAGTAGAGGTGGAGCTCAGCTACTTGCAGGGACAGCATCGAAGACAAATGATCCACAAACTCTTAGAATGGTTGCTGGAGCACTTGCTAATTTATGTGGAAATGAAAGATTACACATGATGCTGAAAGAAGATGGAGGCATTAAGGCGCTCTTGGAAATGGCAAGGTCCGGGAGTAGTGACGTTATAGCTCAAGTTGCTAGAGGAATGGCTAATTTTGCGAAGTGTGAATCTCGCGGAACTATTCAAGAGGACAATGCAAACGATTTCATATTCAGTGGAGGGCTGAAAGAGCTTGTGCGAATATCGAATGAATCCAGTAGGGAAGATATCCGAAATTTAGCAAAGAAGACGTTGAGATTGAGTTCAAAATTTCAGACTGAGATCCATGCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

449

Amino Acids

50.73

Weight (kDa)

5.68

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	235 - 335	3.1e-08	ARMC5
ARM_ARMC5	PF24768	263 - 436	6e-14	ARMC5
Arm	PF00514	271 - 308	5.6e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1188
AciI	CCGC	2 cut(s)	1188, 1343
AclWI	GGATC	3 cut(s)	81, 998, 1330
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	377, 1288, 1322
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	528, 732
AgsI	TTSAA	8 cut(s)	242, 297, 391, 446, 630, 722, 1199, 1320
Alw21I	GWGCWC	2 cut(s)	970, 1036
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	3 cut(s)	81, 998, 1330
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	34, 352, 355, 797
ApoI	RAATTY	3 cut(s)	377, 1288, 1322
AspLEI	GCGC	1 cut(s)	1102
AspS9I	GGNCC	1 cut(s)	1119
AsuC2I	CCSGG	1 cut(s)	1123
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	1119
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	970
BbsI	GAAGAC	4 cut(s)	122, 585, 1001, 1307
Bbv12I	GWGCWC	2 cut(s)	970, 1036
BbvI	GCAGC	4 cut(s)	46, 342, 364, 809
BccI	CCATC	5 cut(s)	101, 130, 643, 775, 1079
BcnI	CCSGG	1 cut(s)	1123
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	6 cut(s)	38, 426, 431, 654, 842, 1152
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	1103
BglI	GCCNNNNNGGC	1 cut(s)	920
BisI	GCNGC	4 cut(s)	35, 353, 356, 798
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	4 cut(s)	36, 354, 357, 799
Bme1390I	CCNGG	1 cut(s)	1123
Bme18I	GGWCC	1 cut(s)	1119
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	1119
BmrFI	CCNGG	1 cut(s)	1123
BmsI	GCATC	4 cut(s)	73, 835, 998, 1062
BpiI	GAAGAC	4 cut(s)	122, 585, 1001, 1307
BpmI	CTGGAG	2 cut(s)	924, 1050
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	1128
BpuMI	CCSGG	1 cut(s)	1123
BsaBI	GATNNNNATC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	1269
Bse3DI	GCAATG	1 cut(s)	930
Bse8I	GATNNNNATC	1 cut(s)	810
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	1 cut(s)	529
BseJI	GATNNNNATC	1 cut(s)	810
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	3 cut(s)	191, 983, 1323
BseNI	ACTGG	1 cut(s)	1269
BseXI	GCAGC	4 cut(s)	46, 342, 364, 809
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	1188
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	970, 1036
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	1122
BslFI	GGGAC	2 cut(s)	619, 997
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	2 cut(s)	619, 997
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	970, 1036
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	73, 406, 1003, 1335
Bsp1720I	GCTNAGC	1 cut(s)	969
BspACI	CCGC	2 cut(s)	1188, 1343
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	190, 982, 1324
BspFNI	CGCG	1 cut(s)	1188
BspPI	GGATC	3 cut(s)	81, 998, 1330
BsrDI	GCAATG	1 cut(s)	930
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	1269
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	73, 406, 1003, 1335
Bst6I	CTCTTC	4 cut(s)	3, 411, 468, 476
BstAUI	TGTACA	1 cut(s)	730
BstDEI	CTNAG	6 cut(s)	177, 326, 890, 969, 1016, 1332
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	1188
BstH2I	RGCGCY	1 cut(s)	1103
BstHHI	GCGC	1 cut(s)	1102
BstKTI	GATC	4 cut(s)	76, 409, 1006, 1338
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	4 cut(s)	73, 406, 1003, 1335
BstSCI	CCNGG	1 cut(s)	1121
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	1188
BstV1I	GCAGC	4 cut(s)	46, 342, 364, 809
BstV2I	GAAGAC	4 cut(s)	122, 585, 1001, 1307
BstX2I	RGATCY	1 cut(s)	1335
BstYI	RGATCY	1 cut(s)	1335
BsuRI	GGCC	1 cut(s)	111
BtgZI	GCGATG	2 cut(s)	101, 333
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	1234
CfoI	GCGC	1 cut(s)	1102
Cfr13I	GGNCC	1 cut(s)	1119
Csp6I	GTAC	2 cut(s)	527, 731
CviAII	CATG	6 cut(s)	131, 346, 511, 770, 1069, 1340
CviQI	GTAC	2 cut(s)	527, 731
DdeI	CTNAG	6 cut(s)	177, 326, 890, 969, 1016, 1332
DpnI	GATC	4 cut(s)	75, 408, 1005, 1337
DpnII	GATC	4 cut(s)	73, 406, 1003, 1335
DraI	TTTAAA	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	4 cut(s)	3, 411, 468, 476
EarI	CTCTTC	4 cut(s)	3, 411, 468, 476
Ecl136II	GAGCTC	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	970
Eco32I	GATATC	1 cut(s)	1282
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	968
EcoRV	GATATC	1 cut(s)	1282
EcoT38I	GRGCYC	1 cut(s)	970
FaeI	CATG	6 cut(s)	134, 349, 514, 773, 1072, 1343
FalI	AAGNNNNNCTT	4 cut(s)	702, 734, 1088, 1120
FaqI	GGGAC	2 cut(s)	619, 997
FatI	CATG	6 cut(s)	130, 345, 510, 769, 1068, 1339
Fnu4HI	GCNGC	4 cut(s)	35, 353, 356, 798
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	4 cut(s)	35, 353, 356, 798
FspBI	CTAG	6 cut(s)	38, 426, 431, 654, 842, 1152
GlaI	GCGC	1 cut(s)	1101
GluI	GCNGC	4 cut(s)	35, 353, 356, 798
GsuI	CTGGAG	2 cut(s)	924, 1050
HaeII	RGCGCY	1 cut(s)	1103
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	1122
HhaI	GCGC	1 cut(s)	1102
Hin1II	CATG	6 cut(s)	134, 349, 514, 773, 1072, 1343
Hin6I	GCGC	1 cut(s)	1100
HinP1I	GCGC	1 cut(s)	1100
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	5 cut(s)	362, 607, 811, 1181, 1265
HpaII	CCGG	1 cut(s)	1122
Hpy166II	GTNNAC	2 cut(s)	553, 620
Hpy188I	TCNGA	9 cut(s)	102, 180, 397, 406, 415, 681, 748, 1286, 1329
Hpy188III	TCNNGA	5 cut(s)	446, 815, 842, 903, 1199
Hpy8I	GTNNAC	2 cut(s)	553, 620
HpyAV	CCTTC	7 cut(s)	295, 304, 415, 514, 565, 681, 827
HpyCH4IV	ACGT	3 cut(s)	280, 1134, 1304
HpyCH4V	TGCA	6 cut(s)	358, 695, 797, 865, 980, 1211
HpyF3I	CTNAG	6 cut(s)	177, 326, 890, 969, 1016, 1332
HpySE526I	ACGT	3 cut(s)	280, 1134, 1304
Hsp92II	CATG	6 cut(s)	134, 349, 514, 773, 1072, 1343
HspAI	GCGC	1 cut(s)	1100
Kzo9I	GATC	4 cut(s)	73, 406, 1003, 1335
LmnI	GCTCC	4 cut(s)	211, 905, 965, 1031
LpnPI	CCDG	9 cut(s)	125, 491, 543, 800, 888, 966, 1014, 1135, 1282
Lsp1109I	GCAGC	4 cut(s)	46, 342, 364, 809
LweI	GCATC	4 cut(s)	73, 835, 998, 1062
MaeI	CTAG	6 cut(s)	38, 426, 431, 654, 842, 1152
MaeII	ACGT	3 cut(s)	280, 1134, 1304
MaeIII	GTNAC	2 cut(s)	336, 1130
MalI	GATC	4 cut(s)	75, 408, 1005, 1337
MboI	GATC	4 cut(s)	73, 406, 1003, 1335
MfeI	CAATTG	3 cut(s)	215, 690, 909
MflI	RGATCY	1 cut(s)	1335
MhlI	GDGCHC	2 cut(s)	970, 1036
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	601
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	4 cut(s)	248, 261, 947, 1095
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	355, 800
MspI	CCGG	1 cut(s)	1122
MspR9I	CCNGG	1 cut(s)	1123
MunI	CAATTG	3 cut(s)	215, 690, 909
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	1188
NciI	CCSGG	1 cut(s)	1123
NdeII	GATC	4 cut(s)	73, 406, 1003, 1335
NlaIII	CATG	6 cut(s)	134, 349, 514, 773, 1072, 1343
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	1130
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	362, 811, 1181, 1265
PfoI	TCCNGGA	1 cut(s)	1121
PkrI	GCNGC	4 cut(s)	36, 354, 357, 799
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	970
PspPI	GGNCC	1 cut(s)	1119
PsuI	RGATCY	1 cut(s)	1335
PvuII	CAGCTG	2 cut(s)	355, 800
RsaI	GTAC	2 cut(s)	528, 732
RsaNI	GTAC	2 cut(s)	527, 731
SacI	GAGCTC	1 cut(s)	970
SaqAI	TTAA	4 cut(s)	248, 261, 947, 1095
SatI	GCNGC	4 cut(s)	35, 353, 356, 798
Sau3AI	GATC	4 cut(s)	73, 406, 1003, 1335
Sau96I	GGNCC	1 cut(s)	1119
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	1123
SduI	GDGCHC	2 cut(s)	970, 1036
SfaNI	GCATC	4 cut(s)	73, 835, 998, 1062
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	1119
SmlI	CTYRAG	1 cut(s)	1143
SmoI	CTYRAG	1 cut(s)	1143
SsiI	CCGC	2 cut(s)	1188, 1343
SspMI	CTAG	6 cut(s)	38, 426, 431, 654, 842, 1152
SstI	GAGCTC	1 cut(s)	970
StyD4I	CCNGG	1 cut(s)	1121
TaiI	ACGT	3 cut(s)	283, 1137, 1307
TaqI	TCGA	2 cut(s)	992, 1259
TatI	WGTACW	1 cut(s)	730
TfiI	GAWTC	4 cut(s)	362, 811, 1181, 1265
Tru1I	TTAA	4 cut(s)	248, 261, 947, 1095
Tru9I	TTAA	4 cut(s)	248, 261, 947, 1095
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	1 cut(s)	1130
TseI	GCWGC	4 cut(s)	34, 352, 355, 797
Tsp45I	GTSAC	1 cut(s)	1130
TspRI	CASTG	1 cut(s)	1234
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	3 cut(s)	377, 1288, 1322
XbaI	TCTAGA	1 cut(s)	841
XspI	CTAG	6 cut(s)	38, 426, 431, 654, 842, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.