Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001912

Physical Location & Seq

Genomic Coordinates Forward (+)

14131717 .. 14132754

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTACGGTCAAACTGGTACAGGGAAGACCTACACACTTGGCAGGCTGGGTTGTGATGATGCATCGGAGCGTGGTATTATGGTTAGAGCTTTGGAGGACATTATTTTGAGCACCTCTCCGGAGTCTGATACTGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTACTTGCACCAGAAAAGACTAATATTCCCATTCACGAGGACCCTAAGACCGGTGAGGTGTCACTTCCTGGTGCTTCGGTAGTAAGAATCAAAGACCTTGATCATTTCTTACAACTTCTGCAAATTGGTGAGGCAAACCGGCATGCAGCTAACACAAATCTAAACACGGAATCTTCTCGTAGTCATGCCATTCTCATGGTTTTCATTCGTAGATCTGTGGAAGACAAATCTACAGATGAGATCATTTCTCAGGAGAAAGCCTCAAGAAATGGCTTACCTATAATTCGAAGAAGCAAGTTGCTCATTGTTGATCTTGCTGGATCCGAAAGAGTTGATAAATCTGGTGCGTCCTTGACATTGCACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

182

Amino Acids

19.97

Weight (kDa)

5.38

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	1 - 176	1.1e-45	Kinesin motor domain
Microtub_bd	PF16796	1 - 62	1.3e-06	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54870 AT3G54870 AT3G54870
fragaria_vesca	FvH4_2g41290 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790 FvH4_7g18790
malus_domestica	MD01G1103200.v1.1 MD07G1169900.v1.1
prunus_persica	Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1 Prupe.2G208800_v2.0.a1
pyrus_communis	pycom01g12970 pycom07g16380
rosa_chinensis	RchiOBHm_Chr1g0362591 RchiOBHm_Chr3g0488101
rosa_laevigata	RLG00000027636
rosa_multiflora	Rmu_co8281713.1_g000001 Rmu_sc0001716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043680 Rroxscaffold_2G00076710 Rroxscaffold_3G00218650 Rroxscaffold_4G00293920 Rroxscaffold_4G00293930
rosa_rugosa	Rorug01G0299900.1
rosa_samantha	Rh1AG308500 Rh1BG272200 Rh1CG289400 Rh1DG302600 Rh2AG571000 Rh2BG101900 Rh2CG104300 Rh3AG286300 Rh5AG442000 Rh5BG250100 Rh5BG250200 Rh5BG276500
rosa_wichuraiana	Rw1G008860 Rw1G027400 Rw6G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	2 cut(s)	495, 508
AfaI	GTAC	2 cut(s)	22, 161
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	92, 157, 329
AluI	AGCT	3 cut(s)	92, 157, 329
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	495, 508
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	154, 326
AsiGI	ACCGGT	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	245, 320
AsuII	TTCGAA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	35, 408
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	166, 338
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	411
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	2 cut(s)	155, 327
BlsI	GCNGC	2 cut(s)	156, 328
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	222, 502
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	52, 74
BpiI	GAAGAC	2 cut(s)	35, 408
BplI	GAGNNNNNCTC	4 cut(s)	103, 135, 425, 457
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	427
BsaWI	WCCGGW	2 cut(s)	121, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	2 cut(s)	230, 318
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	536
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	166, 338
BseYI	CCCAGC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	122, 231, 319
BslI	CCNNNNNNNGG	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	280, 392, 420, 490, 500
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	222, 502
BspPI	GGATC	2 cut(s)	495, 508
BspT104I	TTCGAA	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	230, 318
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	2 cut(s)	230, 318
BssMI	GATC	5 cut(s)	280, 392, 420, 490, 500
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	11, 136
BstAUI	TGTACA	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	47, 324
BstDEI	CTNAG	2 cut(s)	225, 429
BstKTI	GATC	5 cut(s)	283, 395, 423, 493, 503
BstMBI	GATC	5 cut(s)	280, 392, 420, 490, 500
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	166, 338
BstV2I	GAAGAC	2 cut(s)	35, 408
BstX2I	RGATCY	2 cut(s)	392, 500
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	392, 500
Cac8I	GCNNGC	2 cut(s)	47, 324
Cfr10I	RCCGGY	2 cut(s)	230, 318
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	21, 160
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	4 cut(s)	163, 323, 365, 376
CviJI	RGCY	7 cut(s)	5, 49, 92, 157, 329, 440, 453
CviKI_1	RGCY	7 cut(s)	5, 49, 92, 157, 329, 440, 453
CviQI	GTAC	2 cut(s)	21, 160
DdeI	CTNAG	2 cut(s)	225, 429
DpnI	GATC	5 cut(s)	282, 394, 422, 492, 502
DpnII	GATC	5 cut(s)	280, 392, 420, 490, 500
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	67
FaeI	CATG	4 cut(s)	166, 326, 368, 379
FaiI	YATR	8 cut(s)	83, 148, 164, 173, 324, 366, 377, 461
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	4 cut(s)	162, 322, 364, 375
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	155, 327
Fsp4HI	GCNGC	2 cut(s)	155, 327
GluI	GCNGC	2 cut(s)	155, 327
GsaI	CCCAGC	1 cut(s)	53
HapII	CCGG	3 cut(s)	122, 231, 319
HgaI	GACGC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	166, 326, 368, 379
HinfI	GANTC	4 cut(s)	125, 167, 267, 350
HpaII	CCGG	3 cut(s)	122, 231, 319
HphI	GGTGA	2 cut(s)	245, 320
Hpy188I	TCNGA	3 cut(s)	70, 130, 505
Hpy188III	TCNNGA	4 cut(s)	122, 215, 431, 444
HpyCH4III	ACNGT	2 cut(s)	11, 136
HpyCH4V	TGCA	6 cut(s)	65, 154, 188, 301, 326, 541
HpyF3I	CTNAG	2 cut(s)	225, 429
Hsp92II	CATG	4 cut(s)	166, 326, 368, 379
Kpn2I	TCCGGA	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	280, 392, 420, 490, 500
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	166, 338
LweI	GCATC	2 cut(s)	52, 74
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	5 cut(s)	282, 394, 422, 492, 502
MboI	GATC	5 cut(s)	280, 392, 420, 490, 500
MboII	GAAGA	4 cut(s)	40, 345, 413, 480
MflI	RGATCY	2 cut(s)	392, 500
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	303, 462
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	91, 127, 211, 229, 304, 451
Mph1103I	ATGCAT	1 cut(s)	67
MroI	TCCGGA	1 cut(s)	121
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	122, 231, 319
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NdeII	GATC	5 cut(s)	280, 392, 420, 490, 500
NlaIII	CATG	4 cut(s)	166, 326, 368, 379
NlaIV	GGNNCC	2 cut(s)	222, 502
NmuCI	GTSAC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	67
NspI	RCATGY	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	466
PaeI	GCATGC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	167, 267, 350
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	156, 328
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	222, 502
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	392, 500
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	22, 161
RsaNI	GTAC	2 cut(s)	21, 160
RseI	CAYNNNNRTG	1 cut(s)	374
SatI	GCNGC	2 cut(s)	155, 327
Sau3AI	GATC	5 cut(s)	280, 392, 420, 490, 500
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	9 cut(s)	35, 94, 119, 159, 240, 279, 331, 460, 548
SfaNI	GCATC	2 cut(s)	52, 74
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	2 cut(s)	303, 462
SspI	AATATT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	11, 136
TaqI	TCGA	1 cut(s)	466
TasI	AATT	2 cut(s)	303, 462
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	167, 267, 350
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	154, 326
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	135, 373
TspGWI	ACGGA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.