FvH4_3g02200

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005179
Physical Location & Seq
Reverse (-)
1122569 .. 1124236
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02200.t1

Sequence Viewer

Length: 1464 bp
ATGAGCTCTGGAACCATGGGTGAAGATATCAATGAAGATTTGGGCCAGGTTTCCCATATCTGTTGTTTTGGTGCGAGTTATGATGGGATTTTGAGTATGGCGGTAATGGCCCAGTATCACCCGGAGATTACGTTTAAGATAGTGGATATGGATCAGGATTTGATTAAGAAATGGGAAGGGGGTGAGATACTTTTCTATGAGCCTGAGTTTGAGGAGTTGATTGGTGCTGTTAGGGGTAAGAACTTGTTCTTTTGTGAAGAAATGAATGCAGCGATTAATGAGGCTGCTATTGTCTTTGTTGCTGTGGATGTACCTGTTGGTCCAACAAACACTTTGGACTTGACTGATTGGGAATTTGCTATTCAAAAGATAATAGGAGCGTCCACTACTAGAAAGATAATAGTTGAGAAGTCCATGCCTTTCATTCCTCGTAACTGGACTGAAGAAATCATACGATACCAAAATCCATTGGGCTTGAAGTTTTCAGTGTTCTCAAATCCTGACTTTATTTTACAAGGGACAGCAGTACGAGATTTAAGAGACCCGAAGAGGGTGGTTATTGCAAGAAATCATGGCCATGAAGAGGATGTACTTAGGTTAAAACAACTTTATTCTGGATATGTTCCTGTAAAAAGGATTCAAATTGTTGATGATCACAAAACCGCTGCGCTGGGGAAGCTTTGGAGTAGTGTATATCCTGCCATGATGCACACATTTGGGAATGTGATACCTAGCATTTGTGATAGTATAGGTGCTGATTCTAATGATGTTGAAAGAGTTATTGGATGTGCAAATTCTGAAAATTATATGGATGCTTCTATTGGCTTTGGAGGACCAGTAATCCAAGACATTTCTTATTTGAAGTCTGTTCTCCTTCTACACTGTAATGACTGTATTCGTCCAGATCGTCTCATTGGTGGATTGAAGATGGAGTCAGACCTGCTTAATCAGATCATCAAGTTGAACGAGGAGAAAAAGAAGAGGTTTGTAAAGTTGATGTTAAATAAGACGATTTCTTTGTCAGGGATGAAAATTGCTGTCTTTGGTATCTCATATAAAAAGGACACAGACGATATTAGAGACTCACCCGCAATTTACATATGTAAAGCTCTCTTGGAAGAAGGCTGTAAGGTTAGGATTTTTGATCCTAGGGTGAATGAGAACACAATCAGGAATTGTTTTGACTTGAAAGTGAAAAAGAACAAACTCAGGAATCGTTTTCCAAAAACACTCAGTTCAAAACTATGTGTTTGTACTACAATGCCCGAAGCATGGTCTAAAGCAGATGCTGTTGTGTTTTTGGTTAATTGGGATGAATTTCAACAGATTGATTTTGAAGCTATGTATAGAGAAATGAAAGGCTGGCCACGCTTCATGTTTGTGGGATGCAAATCAGGGTTAGACTACAATCGTATTAAGACCCTCGGGTTTGAGCTGTATGTGGATGGAAGGCATTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

488

Amino Acids

55.28

Weight (kDa)

6.0

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 19 - 197 3.5e-30 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 221 - 286 1.2e-06 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 346 - 453 6.9e-24 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 948
AciI CCGC 3 cut(s) 101, 663, 1089
AclWI GGATC 2 cut(s) 159, 1139
AcoI YGGCCR 2 cut(s) 574, 1364
AcsI RAATTY 3 cut(s) 353, 793, 1316
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 4 cut(s) 312, 528, 591, 1255
AfiI CCNNNNNNNGG 3 cut(s) 550, 583, 1272
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 5 cut(s) 6, 679, 1109, 1340, 1435
AluI AGCT 5 cut(s) 6, 679, 1109, 1340, 1435
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 534, 914, 1074
AlwI GGATC 2 cut(s) 159, 1139
AlwNI CAGNNNCTG 1 cut(s) 1289
Ama87I CYCGRG 1 cut(s) 1424
AoxI GGCC 4 cut(s) 43, 108, 574, 1364
ApeKI GCWGC 3 cut(s) 269, 284, 665
ApoI RAATTY 3 cut(s) 353, 793, 1316
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
AseI ATTAAT 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 245
AspA2I CCTAGG 1 cut(s) 1148
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 43, 109, 320, 833
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 5 cut(s) 32, 110, 194, 1077, 1165
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 2 cut(s) 320, 833
AvrII CCTAGG 1 cut(s) 1148
BalI TGGCCA 2 cut(s) 576, 1366
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 4 cut(s) 435, 467, 573, 605
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 271, 281, 652
BccI CCATC 3 cut(s) 77, 922, 1439
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 534, 914, 1074
BfaI CTAG 3 cut(s) 390, 732, 1149
BfuAI ACCTGC 1 cut(s) 948
BisI GCNGC 3 cut(s) 270, 285, 666
BlnI CCTAGG 1 cut(s) 1148
BlsI GCNGC 3 cut(s) 271, 286, 667
Bme1390I CCNGG 2 cut(s) 47, 122
Bme18I GGWCC 2 cut(s) 320, 833
BmeT110I CYCGRG 1 cut(s) 1424
BmgT120I GGNCC 4 cut(s) 43, 109, 320, 833
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 47, 122
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 4 cut(s) 696, 802, 1276, 1376
BmuI ACTGGG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 122
BsaBI GATNNNNATC 2 cut(s) 150, 1390
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 15, 1148, 1423
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 822, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 583, 1272
Bse1I ACTGG 3 cut(s) 112, 440, 836
Bse8I GATNNNNATC 2 cut(s) 150, 1390
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 15, 1148, 1423
BseGI GGATG 8 cut(s) 313, 592, 791, 817, 1032, 1318, 1391, 1450
BseJI GATNNNNATC 2 cut(s) 150, 1390
BseLI CCNNNNNNNGG 3 cut(s) 550, 583, 1272
BseMII CTCAG 3 cut(s) 195, 1222, 1246
BseNI ACTGG 3 cut(s) 112, 440, 836
BseRI GAGGAG 2 cut(s) 227, 983
BseXI GCAGC 3 cut(s) 271, 281, 652
BseYI CCCAGC 1 cut(s) 670
BshFI GGCC 4 cut(s) 45, 110, 576, 1366
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 1424
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 550, 583, 1272
BsmAI GTCTC 3 cut(s) 534, 914, 1074
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 4 cut(s) 45, 110, 576, 1366
Bso31I GGTCTC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 1424
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 151, 652, 904, 951, 1144
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 101, 663, 1089
BspANI GGCC 4 cut(s) 45, 110, 576, 1366
BspCNI CTCAG 3 cut(s) 196, 1221, 1245
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 2 cut(s) 159, 1139
BspTNI GGTCTC 1 cut(s) 534
BsrI ACTGG 3 cut(s) 112, 440, 836
BssECI CCNNGG 3 cut(s) 15, 1148, 1423
BssMI GATC 5 cut(s) 151, 652, 904, 951, 1144
BssT1I CCWWGG 2 cut(s) 15, 1148
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 884, 893
Bst6I CTCTTC 3 cut(s) 542, 576, 974
BstC8I GCNNGC 1 cut(s) 1364
BstDEI CTNAG 4 cut(s) 204, 593, 1208, 1232
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 8 cut(s) 313, 592, 791, 817, 1032, 1318, 1391, 1450
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 5 cut(s) 154, 655, 907, 954, 1147
BstMAI GTCTC 3 cut(s) 534, 914, 1074
BstMBI GATC 5 cut(s) 151, 652, 904, 951, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 107, 676, 1368
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 120
BstV1I GCAGC 3 cut(s) 271, 281, 652
BsuRI GGCC 4 cut(s) 45, 110, 576, 1366
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 8 cut(s) 313, 592, 791, 817, 1032, 1318, 1391, 1450
BtsIMutI CAGTG 2 cut(s) 492, 880
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 1 cut(s) 1364
CaiI CAGNNNCTG 1 cut(s) 1289
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 4 cut(s) 43, 109, 320, 833
CseI GACGC 1 cut(s) 369
Csp6I GTAC 4 cut(s) 311, 527, 590, 1254
CviAII CATG 7 cut(s) 16, 415, 572, 578, 703, 1272, 1375
CviQI GTAC 4 cut(s) 311, 527, 590, 1254
DdeI CTNAG 4 cut(s) 204, 593, 1208, 1232
DpnI GATC 5 cut(s) 153, 654, 906, 953, 1146
DpnII GATC 5 cut(s) 151, 652, 904, 951, 1144
EaeI YGGCCR 2 cut(s) 574, 1364
Eam1104I CTCTTC 3 cut(s) 542, 576, 974
EarI CTCTTC 3 cut(s) 542, 576, 974
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 15, 1148
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 534
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 320, 833
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 1424
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 2 cut(s) 15, 1148
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 15, 1148
Esp3I CGTCTC 1 cut(s) 914
FaeI CATG 7 cut(s) 19, 418, 575, 581, 706, 1275, 1378
FaqI GGGAC 1 cut(s) 532
FatI CATG 7 cut(s) 15, 414, 571, 577, 702, 1271, 1374
FauI CCCGC 1 cut(s) 1096
FauNDI CATATG 1 cut(s) 1100
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 270, 285, 666
FokI GGATG 8 cut(s) 320, 599, 798, 824, 1039, 1325, 1398, 1457
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 270, 285, 666
FspBI CTAG 3 cut(s) 390, 732, 1149
GlaI GCGC 1 cut(s) 669
GluI GCNGC 3 cut(s) 270, 285, 666
GsaI CCCAGC 1 cut(s) 674
HaeIII GGCC 4 cut(s) 45, 110, 576, 1366
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 670
Hin1II CATG 7 cut(s) 19, 418, 575, 581, 706, 1275, 1378
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 5 cut(s) 637, 758, 932, 1082, 1213
HpaII CCGG 1 cut(s) 122
HphI GGTGA 5 cut(s) 32, 110, 194, 1077, 1165
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 3 cut(s) 799, 937, 951
Hpy188III TCNNGA 7 cut(s) 9, 155, 500, 615, 902, 1171, 1210
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 4 cut(s) 170, 884, 1115, 1443
HpyCH4III ACNGT 2 cut(s) 884, 893
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 269, 563, 709, 791, 1389
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 676, 1368
HpyF3I CTNAG 4 cut(s) 204, 593, 1208, 1232
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 7 cut(s) 19, 418, 575, 581, 706, 1275, 1378
HspAI GCGC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 5 cut(s) 151, 652, 904, 951, 1144
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 3 cut(s) 271, 281, 652
LweI GCATC 4 cut(s) 696, 802, 1276, 1376
MaeI CTAG 3 cut(s) 390, 732, 1149
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 431
MalI GATC 5 cut(s) 153, 654, 906, 953, 1146
MboI GATC 5 cut(s) 151, 652, 904, 951, 1144
MboII GAAGA 9 cut(s) 35, 47, 269, 455, 559, 593, 937, 991, 1130
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 2 cut(s) 576, 1366
MluCI AATT 9 cut(s) 353, 642, 793, 802, 1032, 1092, 1174, 1306, 1316
MluNI TGGCCA 2 cut(s) 576, 1366
MlyI GAGTC 2 cut(s) 941, 1076
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 9 cut(s) 205, 274, 438, 543, 577, 824, 961, 975, 1433
Mox20I TGGCCA 2 cut(s) 576, 1366
MroXI GAANNNNTTC 1 cut(s) 245
MscI TGGCCA 2 cut(s) 576, 1366
MseI TTAA 9 cut(s) 135, 165, 276, 536, 599, 945, 1001, 1305, 1416
MslI CAYNNNNRTG 3 cut(s) 576, 885, 1379
Msp20I TGGCCA 2 cut(s) 576, 1366
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 47, 122
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 107, 676, 1368
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 1100
NdeII GATC 5 cut(s) 151, 652, 904, 951, 1144
NlaIII CATG 7 cut(s) 19, 418, 575, 581, 706, 1275, 1378
NlaIV GGNNCC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PctI GAATGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 637, 758, 1213
PkrI GCNGC 3 cut(s) 271, 286, 667
PleI GAGTC 2 cut(s) 940, 1076
PpsI GAGTC 2 cut(s) 940, 1076
PshBI ATTAAT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 4 cut(s) 43, 109, 320, 833
PstNI CAGNNNCTG 1 cut(s) 1289
RsaI GTAC 4 cut(s) 312, 528, 591, 1255
RsaNI GTAC 4 cut(s) 311, 527, 590, 1254
RseI CAYNNNNRTG 3 cut(s) 576, 885, 1379
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 9 cut(s) 135, 165, 276, 536, 599, 945, 1001, 1305, 1416
SatI GCNGC 3 cut(s) 270, 285, 666
Sau3AI GATC 5 cut(s) 151, 652, 904, 951, 1144
Sau96I GGNCC 4 cut(s) 43, 109, 320, 833
SchI GAGTC 2 cut(s) 941, 1076
ScrFI CCNGG 2 cut(s) 47, 122
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 696, 802, 1276, 1376
SinI GGWCC 2 cut(s) 320, 833
SmiMI CAYNNNNRTG 3 cut(s) 576, 885, 1379
Sse9I AATT 9 cut(s) 353, 642, 793, 802, 1032, 1092, 1174, 1306, 1316
SsiI CCGC 3 cut(s) 101, 663, 1089
SspMI CTAG 3 cut(s) 390, 732, 1149
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 45, 120
StyI CCWWGG 2 cut(s) 15, 1148
TaaI ACNGT 2 cut(s) 884, 893
TaiI ACGT 1 cut(s) 134
TasI AATT 9 cut(s) 353, 642, 793, 802, 1032, 1092, 1174, 1306, 1316
TatI WGTACW 2 cut(s) 589, 1253
TfiI GAWTC 3 cut(s) 637, 758, 1213
Tru1I TTAA 9 cut(s) 135, 165, 276, 536, 599, 945, 1001, 1305, 1416
Tru9I TTAA 9 cut(s) 135, 165, 276, 536, 599, 945, 1001, 1305, 1416
TscAI CASTG 2 cut(s) 492, 887
TseI GCWGC 3 cut(s) 269, 284, 665
TspDTI ATGAA 8 cut(s) 48, 278, 412, 594, 1043, 1329, 1363, 1370
TspRI CASTG 2 cut(s) 492, 887
VpaK11BI GGWCC 2 cut(s) 320, 833
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 3 cut(s) 353, 793, 1316
XmaJI CCTAGG 1 cut(s) 1148
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 3 cut(s) 390, 732, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.