Rh5CG011000

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005179
Physical Location & Seq
Reverse (-)
711194 .. 711844
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG011000.1

Sequence Viewer

Length: 651 bp
ATGGCAGATCAGGGTCCTCTTAATGTTGTTCCTTTAGCGGTCATTCTTCCGGACCCAAATTTAGACGTTGTTCCTTTAGCAGTCATTCTTCCGGGTCAAAACATCCTTCCTCCAAATAATGTTCTTCCTCCGGATTTCGATCATATCACCAACGTATGTTGCATCGGTGCCACCCAATCCAGCGTTATGCACATGGCAGTAATAGCAGAGCGATACCCAAGACTTAACGTCGTTGTGGCAGATTTCAATCAACAACTAATCGGGAACATAGATTTTGAAGAGGAAGGTATGTTCGAGTTGTTAGAAAATCTTGCCGTTGCTAATCTACAGTTTGTCGATGATGTGAACGAAGCAATCGTAGATGCCCAGATGATTTTTATTGGAGTTGAAATACCTATCAAGGTAATTGGCTGTCGTGAAGGATTTGACCTAAGGCTATGGGTAAAAGCCATAAGGAGGATTGTGAAAGTGGCACCAACGTCAAAGATTATCGTAGAAAGATCGACCATGCCAATTGATTCTTTCGATATGACAACCACATTATTAGCCCGAAGACCTCCGCCTCCTTATGGCCAACCTGCTGTGCAATTTGCCGTTATGTCCAATCCGGACTTTTCCTCTCCGGGCTCTAGACCTGAGGAACCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

216

Amino Acids

23.76

Weight (kDa)

4.53

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 51 - 211 3.7e-19 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 2 cut(s) 167, 472
AccIII TCCGGA 3 cut(s) 49, 130, 607
AciI CCGC 2 cut(s) 38, 560
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 456, 569
AgsI TTSAA 3 cut(s) 247, 278, 389
AhdI GACNNNNNGTC 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
Aor13HI TCCGGA 3 cut(s) 49, 130, 607
AoxI GGCC 1 cut(s) 571
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 14, 52
AsuC2I CCSGG 2 cut(s) 93, 624
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 14, 52
AxyI CCTNAGG 2 cut(s) 431, 636
BalI TGGCCA 1 cut(s) 573
BanI GGYRCC 2 cut(s) 167, 472
BanII GRGCYC 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 559
BceAI ACGGC 2 cut(s) 299, 578
BcnI CCSGG 2 cut(s) 93, 624
BfaI CTAG 1 cut(s) 630
BfmI CTRYAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 586
Bme1390I CCNGG 2 cut(s) 93, 624
Bme18I GGWCC 2 cut(s) 14, 52
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 14, 52
BmiI GGNNCC 5 cut(s) 15, 54, 169, 474, 642
BmrFI CCNGG 2 cut(s) 93, 624
BmsI GCATC 2 cut(s) 171, 352
BpiI GAAGAC 1 cut(s) 559
BpuMI CCSGG 2 cut(s) 93, 624
BsaBI GATNNNNATC 2 cut(s) 138, 246
BsaWI WCCGGW 3 cut(s) 49, 130, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 569
Bse21I CCTNAGG 2 cut(s) 431, 636
Bse8I GATNNNNATC 2 cut(s) 138, 246
BseAI TCCGGA 3 cut(s) 49, 130, 607
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 2 cut(s) 138, 246
BseLI CCNNNNNNNGG 2 cut(s) 456, 569
BseMII CTCAG 1 cut(s) 627
BshFI GGCC 1 cut(s) 573
BshNI GGYRCC 2 cut(s) 167, 472
BsiSI CCGG 5 cut(s) 50, 92, 131, 608, 623
BslI CCNNNNNNNGG 2 cut(s) 456, 569
BsnI GGCC 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 629
Bsp13I TCCGGA 3 cut(s) 49, 130, 607
Bsp143I GATC 3 cut(s) 7, 139, 500
BspACI CCGC 2 cut(s) 38, 560
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 628
BspEI TCCGGA 3 cut(s) 49, 130, 607
BspLI GGNNCC 5 cut(s) 15, 54, 169, 474, 642
BspMI ACCTGC 1 cut(s) 586
BspT107I GGYRCC 2 cut(s) 167, 472
BssMI GATC 3 cut(s) 7, 139, 500
Bst4CI ACNGT 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 431, 636
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 3 cut(s) 10, 142, 503
BstMBI GATC 3 cut(s) 7, 139, 500
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 91, 622
BstSFI CTRYAG 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 559
Bsu36I CCTNAGG 2 cut(s) 431, 636
BsuRI GGCC 1 cut(s) 573
BtsCI GGATG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 586
Cfr13I GGNCC 2 cut(s) 14, 52
CviAII CATG 2 cut(s) 193, 508
CviJI RGCY 6 cut(s) 411, 436, 449, 548, 573, 627
CviKI_1 RGCY 6 cut(s) 411, 436, 449, 548, 573, 627
DdeI CTNAG 2 cut(s) 431, 636
DpnI GATC 3 cut(s) 9, 141, 502
DpnII GATC 3 cut(s) 7, 139, 500
DriI GACNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 14, 52
Eco81I CCTNAGG 2 cut(s) 431, 636
EcoO109I RGGNCCY 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 629
FaeI CATG 2 cut(s) 196, 511
FatI CATG 2 cut(s) 192, 507
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 629
FspBI CTAG 1 cut(s) 630
HaeIII GGCC 1 cut(s) 573
HapII CCGG 5 cut(s) 50, 92, 131, 608, 623
Hin1II CATG 2 cut(s) 196, 511
HinfI GANTC 1 cut(s) 518
HpaII CCGG 5 cut(s) 50, 92, 131, 608, 623
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 6 cut(s) 50, 131, 262, 416, 608, 630
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 116, 278, 413
HpyCH4III ACNGT 1 cut(s) 330
HpyCH4IV ACGT 4 cut(s) 66, 153, 228, 479
HpyCH4V TGCA 3 cut(s) 162, 190, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 431, 636
HpySE526I ACGT 4 cut(s) 66, 153, 228, 479
Hsp92II CATG 2 cut(s) 196, 511
Kpn2I TCCGGA 3 cut(s) 49, 130, 607
Kzo9I GATC 3 cut(s) 7, 139, 500
LpnPI CCDG 8 cut(s) 63, 105, 144, 193, 380, 591, 621, 636
LweI GCATC 2 cut(s) 171, 352
MaeI CTAG 1 cut(s) 630
MaeII ACGT 4 cut(s) 66, 153, 228, 479
MalI GATC 3 cut(s) 9, 141, 502
MboI GATC 3 cut(s) 7, 139, 500
MboII GAAGA 5 cut(s) 38, 80, 116, 290, 564
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 629
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 4 cut(s) 58, 405, 513, 587
MluNI TGGCCA 1 cut(s) 573
MnlI CCTC 9 cut(s) 27, 120, 138, 274, 450, 567, 573, 628, 631
Mox20I TGGCCA 1 cut(s) 573
MroI TCCGGA 3 cut(s) 49, 130, 607
MscI TGGCCA 1 cut(s) 573
MseI TTAA 2 cut(s) 21, 225
Msp20I TGGCCA 1 cut(s) 573
MspI CCGG 5 cut(s) 50, 92, 131, 608, 623
MspR9I CCNGG 2 cut(s) 93, 624
MunI CAATTG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 2 cut(s) 93, 624
NdeII GATC 3 cut(s) 7, 139, 500
NlaIII CATG 2 cut(s) 196, 511
NlaIV GGNNCC 5 cut(s) 15, 54, 169, 474, 642
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 1 cut(s) 518
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 5 cut(s) 15, 54, 169, 474, 642
PspPI GGNCC 2 cut(s) 14, 52
PspPPI RGGWCCY 1 cut(s) 14
SaqAI TTAA 2 cut(s) 21, 225
Sau3AI GATC 3 cut(s) 7, 139, 500
Sau96I GGNCC 2 cut(s) 14, 52
ScrFI CCNGG 2 cut(s) 93, 624
SduI GDGCHC 1 cut(s) 629
SfaNI GCATC 2 cut(s) 171, 352
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 2 cut(s) 14, 52
Sse9I AATT 4 cut(s) 58, 405, 513, 587
SsiI CCGC 2 cut(s) 38, 560
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 2 cut(s) 91, 622
TaaI ACNGT 1 cut(s) 330
TaiI ACGT 4 cut(s) 69, 156, 231, 482
TaqI TCGA 5 cut(s) 138, 294, 336, 503, 525
TasI AATT 4 cut(s) 58, 405, 513, 587
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 21, 225
Tru9I TTAA 2 cut(s) 21, 225
VpaK11BI GGWCC 2 cut(s) 14, 52
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 629
XspI CTAG 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.