Rh5DG031500

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005179
Physical Location & Seq
Forward (+)
2228129 .. 2229456
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG031500.1

Sequence Viewer

Length: 1167 bp
ATGAGCATGGCGGTAATTGCCGAAGCACACCCCAACATCACTGTCACGATAGTTGACTTTGACCTTAATGTTTTGGAACCTTGGGTGGCAAGGGACGTCGATCTGGTAGAGCCAGGTTTTGAACAGCTGTTGGATGAAGTCTTGGATGTAAACATGTTCTTTAGTGACCAAGTACAAGAATCCATCAATGAAGCACAAATGATTTTCATCGGCGTTGAGATACCTATCAAAAGACGTGGTATAGGAGCAAGATCTCGTTTGGACCTCACCCAATGGGAATTAGCAATTAGAAGCCAGGCGATTGAAGACTTGAGGAACCCAGATCAGGTCATCATTGCACGCAAATCAAATGTTGGGAATGTTGATGTGTTAGTAGAATTGTATGCAGAAATAGTTGAAAATCCAGATAGGATAATCGTGCTACCTGATCATGTCTCTGTCGAGCTTGCCAAAATTGGTACAAGTGTAGCGATTGGTGCAAAAATCACTCTTATGAGTATGATTTCGACCGTCTGCGACAAAACAGGTGCTAACTTCAACAGCGTGCGACAAGTTATTGGAGGTGACTATAGGCTTAATAACAATTATATGGATGCGACATTAGGAATTGGTGGTCCAGACCTAATGAAAGATATTTTGTACTTCAAGGGTACTCTCCGTGAAAATGGATTGGCCACACAAGCGAGCCTAGTTAATCAGATTGTCAAGCTGAGCAAAAAGAGGATAAAGGAATTTGTGGAACTAGTCTTAACCAATATGGTCTCACTTAATAACAAAGTTATTGCCGTGTTTGGTGTCACATATAAGAGCAACATAGCCGATCTTACAAATTCACCTGCAATAGCCGTATGCAAATCTCTCTTGAAGGAAGGTGCTATACTACGCATTTTTGATCCTTTGGTGACTGAGAATGCGATCATGGGCTGCTTTCGTAATGCTAACAGGGTCGAAGTTGCTGCTAATCAACAAGCAGCATATAACCAAGCGCACGCTACTTTATGTTTGGTGGCTACAGACCTTCAATTTGATTTCGCAGGAATGAGTGCTGCTATGACAGTCCCACCCTACTTGTTTATCGCCTGCAATTTGGATAATATCGACGTAGTCGGTATTAGGGCGCTTGGATTCCAACTTTACATTTTTGGAAATCAATTCCCGTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

388

Amino Acids

42.68

Weight (kDa)

4.81

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 4 - 117 1.5e-10 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 147 - 235 7e-13 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 262 - 339 6.6e-14 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 844
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 844
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 887
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 2 cut(s) 731, 829
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 4 cut(s) 174, 460, 641, 652
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 7 cut(s) 122, 305, 398, 538, 646, 865, 1022
AhlI ACTAGT 1 cut(s) 742
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 112, 294
AluBI AGCT 3 cut(s) 127, 445, 709
AluI AGCT 3 cut(s) 127, 445, 709
Alw26I GTCTC 2 cut(s) 439, 766
AlwI GGATC 1 cut(s) 887
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 4 cut(s) 924, 956, 971, 1046
ApoI RAATTY 2 cut(s) 731, 829
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
AspLEI GCGC 2 cut(s) 988, 1120
AspS9I GGNCC 2 cut(s) 262, 614
AsuHPI GGTGA 4 cut(s) 259, 575, 825, 913
AvaII GGWCC 2 cut(s) 262, 614
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BalI TGGCCA 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 861, 893
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 911, 943, 983, 1033
BccI CCATC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 770, 830
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 2 cut(s) 114, 296
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 439, 766
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 2 cut(s) 689, 743
BfmI CTRYAG 2 cut(s) 568, 1011
BfoI RGCGCY 1 cut(s) 1121
BfuAI ACCTGC 1 cut(s) 844
BglII AGATCT 1 cut(s) 251
BisI GCNGC 4 cut(s) 925, 957, 972, 1047
BlpI GCTNAGC 1 cut(s) 710
BlsI GCNGC 4 cut(s) 926, 958, 973, 1048
Bme1390I CCNGG 2 cut(s) 114, 296
Bme18I GGWCC 2 cut(s) 262, 614
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 262, 614
BmiI GGNNCC 2 cut(s) 78, 317
BmrFI CCNGG 2 cut(s) 114, 296
BmsI GCATC 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 331
BsaBI GATNNNNATC 2 cut(s) 206, 224
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 2 cut(s) 206, 224
BseBI CCWGG 2 cut(s) 114, 296
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 139, 151, 598
BseJI GATNNNNATC 2 cut(s) 206, 224
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 701, 897
BseXI GCAGC 4 cut(s) 911, 943, 983, 1033
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 510
BslFI GGGAC 2 cut(s) 107, 1043
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 439, 766
BsmFI GGGAC 2 cut(s) 107, 1043
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 1 cut(s) 674
Bso31I GGTCTC 1 cut(s) 766
Bsp143I GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
Bsp1720I GCTNAGC 1 cut(s) 710
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 2 cut(s) 702, 898
BspLI GGNNCC 2 cut(s) 78, 317
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 1 cut(s) 887
BspTNI GGTCTC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 114, 296
Bst4CI ACNGT 3 cut(s) 43, 511, 1057
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 6 cut(s) 340, 447, 545, 685, 990, 1081
BstDEI CTNAG 2 cut(s) 710, 906
BstF5I GGATG 3 cut(s) 139, 151, 598
BstH2I RGCGCY 1 cut(s) 1121
BstHHI GCGC 2 cut(s) 988, 1120
BstKTI GATC 7 cut(s) 103, 254, 325, 430, 823, 895, 918
BstMAI GTCTC 2 cut(s) 439, 766
BstMBI GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 3 cut(s) 17, 476, 680
BstNI CCWGG 2 cut(s) 114, 296
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 112, 294
BstSFI CTRYAG 2 cut(s) 568, 1011
BstV1I GCAGC 4 cut(s) 911, 943, 983, 1033
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BsuRI GGCC 1 cut(s) 674
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 3 cut(s) 139, 151, 598
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 6 cut(s) 340, 447, 545, 685, 990, 1081
CfoI GCGC 2 cut(s) 988, 1120
Cfr13I GGNCC 2 cut(s) 262, 614
Csp6I GTAC 4 cut(s) 173, 459, 640, 651
CspCI CAANNNNNGTGG 4 cut(s) 217, 252, 1050, 1085
CviAII CATG 4 cut(s) 7, 154, 431, 919
CviQI GTAC 4 cut(s) 173, 459, 640, 651
DdeI CTNAG 2 cut(s) 710, 906
DpnI GATC 7 cut(s) 102, 253, 324, 429, 822, 894, 917
DpnII GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 262, 614
EcoRII CCWGG 2 cut(s) 112, 294
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 4 cut(s) 10, 157, 434, 922
FaqI GGGAC 2 cut(s) 107, 1043
FatI CATG 4 cut(s) 6, 153, 430, 918
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 925, 957, 972, 1047
FokI GGATG 3 cut(s) 146, 158, 605
Fsp4HI GCNGC 4 cut(s) 925, 957, 972, 1047
FspBI CTAG 2 cut(s) 689, 743
GlaI GCGC 2 cut(s) 987, 1119
GluI GCNGC 4 cut(s) 925, 957, 972, 1047
HaeII RGCGCY 1 cut(s) 1121
HaeIII GGCC 1 cut(s) 674
HhaI GCGC 2 cut(s) 988, 1120
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 4 cut(s) 10, 157, 434, 922
Hin6I GCGC 2 cut(s) 986, 1118
HinP1I GCGC 2 cut(s) 986, 1118
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 2 cut(s) 179, 1125
HphI GGTGA 4 cut(s) 259, 575, 825, 913
Hpy166II GTNNAC 2 cut(s) 55, 151
Hpy188I TCNGA 1 cut(s) 699
Hpy188III TCNNGA 4 cut(s) 46, 404, 617, 862
Hpy8I GTNNAC 2 cut(s) 55, 151
Hpy99I CGWCG 2 cut(s) 101, 1103
HpyAV CCTTC 3 cut(s) 859, 863, 1028
HpyCH4III ACNGT 3 cut(s) 43, 511, 1057
HpyCH4IV ACGT 3 cut(s) 96, 235, 1101
HpyCH4V TGCA 6 cut(s) 338, 386, 479, 839, 852, 1083
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 476, 680
HpyF3I CTNAG 2 cut(s) 710, 906
HpySE526I ACGT 3 cut(s) 96, 235, 1101
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 4 cut(s) 10, 157, 434, 922
HspAI GCGC 2 cut(s) 986, 1118
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 4 cut(s) 911, 943, 983, 1033
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 689, 743
MaeII ACGT 3 cut(s) 96, 235, 1101
MaeIII GTNAC 5 cut(s) 43, 164, 563, 796, 901
MalI GATC 7 cut(s) 102, 253, 324, 429, 822, 894, 917
MboI GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MmeI TCCRAC 3 cut(s) 111, 1140, 1153
MnlI CCTC 4 cut(s) 275, 306, 554, 714
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 5 cut(s) 66, 576, 693, 749, 768
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 114, 296
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 2 cut(s) 114, 296
MwoI GCNNNNNNNGC 3 cut(s) 17, 476, 680
NdeII GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
NlaIII CATG 4 cut(s) 10, 157, 434, 922
NlaIV GGNNCC 2 cut(s) 78, 317
NmuCI GTSAC 5 cut(s) 43, 164, 563, 796, 901
NspI RCATGY 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 844
PciI ACATGT 1 cut(s) 153
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 2 cut(s) 179, 1125
PflFI GACNNNGTC 1 cut(s) 1103
PkrI GCNGC 4 cut(s) 926, 958, 973, 1048
PscI ACATGT 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 112, 294
PspGI CCWGG 2 cut(s) 112, 294
PspN4I GGNNCC 2 cut(s) 78, 317
PspPI GGNCC 2 cut(s) 262, 614
PsuI RGATCY 1 cut(s) 251
PsyI GACNNNGTC 1 cut(s) 1103
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 4 cut(s) 174, 460, 641, 652
RsaNI GTAC 4 cut(s) 173, 459, 640, 651
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 5 cut(s) 66, 576, 693, 749, 768
SatI GCNGC 4 cut(s) 925, 957, 972, 1047
Sau3AI GATC 7 cut(s) 100, 251, 322, 427, 820, 892, 915
Sau96I GGNCC 2 cut(s) 262, 614
ScrFI CCNGG 2 cut(s) 114, 296
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 2 cut(s) 568, 1011
SinI GGWCC 2 cut(s) 262, 614
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 742
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 689, 743
StyD4I CCNGG 2 cut(s) 112, 294
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 43, 511, 1057
TaiI ACGT 3 cut(s) 99, 238, 1104
TaqI TCGA 5 cut(s) 99, 441, 506, 948, 1098
TatI WGTACW 2 cut(s) 172, 639
TfiI GAWTC 2 cut(s) 179, 1125
Tru1I TTAA 5 cut(s) 66, 576, 693, 749, 768
Tru9I TTAA 5 cut(s) 66, 576, 693, 749, 768
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 5 cut(s) 43, 164, 563, 796, 901
TseI GCWGC 4 cut(s) 924, 956, 971, 1046
Tsp45I GTSAC 5 cut(s) 43, 164, 563, 796, 901
TspDTI ATGAA 4 cut(s) 150, 196, 204, 641
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 1103
VpaK11BI GGWCC 2 cut(s) 262, 614
XapI RAATTY 2 cut(s) 731, 829
XceI RCATGY 1 cut(s) 157
XspI CTAG 2 cut(s) 689, 743
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.